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N16961": { "protein": { "A": 3717, "P": 3492, "F": 3493, "C": 3099 }, "RNA_cluster": { "A": 122, "P": 63, "F": 118, "C": 59 }, "protein_complex": { "A": 1, "P": 1, "F": 1, "C": 1 } }, "NCBITaxon:224308|Bacillus subtilis subsp. subtilis str. 168": { "protein": { "A": 3430, "P": 2538, "F": 2690, "C": 2307 }, "RNA_cluster": { "A": 287, "P": 127, "F": 238, "C": 147 } }, "NCBITaxon:632|Yersinia pestis": { "protein": { "A": 3057, "P": 2439, "F": 2527, "C": 2143 }, "RNA_cluster": { "A": 671, "P": 338, "F": 528, "C": 343 }, "other": { "A": 9, "P": 2, "F": 8, "C": 0 } }, "NCBITaxon:226900|Bacillus cereus ATCC 14579": { "protein": { "A": 3970, "P": 2484, "F": 3031, "C": 2496 }, "RNA_cluster": { "A": 123, "P": 68, "F": 119, "C": 56 } }, "NCBITaxon:190485|Xanthomonas campestris pv. campestris str. 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IM2": 17, "NCBITaxon:7719|Ciona intestinalis": 16, "NCBITaxon:441771|Clostridium botulinum A str. Hall": 16, "NCBITaxon:189518|Leptospira interrogans serovar Lai str. 56601": 16, "NCBITaxon:243273|Mycoplasmoides genitalium G37": 16, "NCBITaxon:9258|Ornithorhynchus anatinus": 15, "NCBITaxon:227377|Coxiella burnetii RSA 493": 15, "NCBITaxon:64091|Halobacterium salinarum NRC-1": 15, "NCBITaxon:13616|Monodelphis domestica": 14, "NCBITaxon:3708|Brassica napus": 14, "NCBITaxon:28377|Anolis carolinensis": 14, "NCBITaxon:88036|Selaginella moellendorffii": 14, "NCBITaxon:7739|Branchiostoma floridae": 14, "NCBITaxon:3760|Prunus persica": 14, "NCBITaxon:5888|Paramecium tetraurelia": 14, "NCBITaxon:3659|Cucumis sativus": 14, "NCBITaxon:284811|Eremothecium gossypii ATCC 10895": 14, "NCBITaxon:4232|Helianthus annuus": 13, "NCBITaxon:7918|Lepisosteus oculatus": 13, "NCBITaxon:3983|Manihot esculenta": 13, "NCBITaxon:665079|Sclerotinia sclerotiorum 1980 UF-70": 13, "NCBITaxon:81824|Monosiga brevicollis": 13, "NCBITaxon:190304|Fusobacterium nucleatum subsp. nucleatum ATCC 25586": 13, "NCBITaxon:3711|Brassica rapa": 12, "NCBITaxon:4555|Setaria italica": 12, "NCBITaxon:3641|Theobroma cacao": 12, "NCBITaxon:2711|Citrus sinensis": 12, "NCBITaxon:13333|Amborella trichopoda": 12, "NCBITaxon:6669|Daphnia pulex": 12, "NCBITaxon:412133|Trichomonas vaginalis G3": 12, "NCBITaxon:10228|Trichoplax adhaerens": 12, "NCBITaxon:5786|Dictyostelium purpureum": 12, "NCBITaxon:418459|Puccinia graminis f. sp. tritici CRL 75-36-700-3": 12, "NCBITaxon:35128|Thalassiosira pseudonana": 12, "NCBITaxon:243090|Rhodopirellula baltica SH 1": 12, "NCBITaxon:436308|Nitrosopumilus maritimus SCM1": 12, "NCBITaxon:374847|Candidatus Korarchaeum cryptofilum OPF8": 12, "NCBITaxon:4236|Lactuca sativa": 11, "NCBITaxon:4155|Erythranthe guttata": 11, "NCBITaxon:4432|Nelumbo nucifera": 11, "NCBITaxon:29655|Zostera marina": 11, "NCBITaxon:6412|Helobdella robusta": 11, "NCBITaxon:54126|Pristionchus pacificus": 11, "NCBITaxon:105231|Klebsormidium nitens": 11, "NCBITaxon:164328|Phytophthora ramorum": 11, "NCBITaxon:684364|Batrachochytrium dendrobatidis JAM81": 11, "NCBITaxon:289376|Thermodesulfovibrio yellowstonii DSM 11347": 11, "NCBITaxon:515635|Dictyoglomus turgidum DSM 6724": 11, "NCBITaxon:71139|Eucalyptus grandis": 11, "NCBITaxon:214687|Musa acuminata subsp. malaccensis": 10 }, "by_group": { "UniProt": 45522, "MGI": 21053, "RGD": 19935, "Reactome": 15539, "IntAct": 15440, "FlyBase": 12228, "SGD": 11260, "TAIR": 9572, "ZFIN": 7359, "EcoCyc": 5964, "PINC": 5616, "BHF-UCL": 5276, "ComplexPortal": 3616, "PomBase": 3586, "WB": 3480, "SynGO": 1895, "dictyBase": 1871, "CGD": 1743, "GeneDB": 1692, "ARUK-UCL": 1629, "CACAO": 1561, "AgBase": 1102, "AspGD": 1086, "MTBBASE": 1019, "EcoliWiki": 839, "PseudoCAP": 767, "GO_Central": 760, "ParkinsonsUK-UCL": 709, "DisProt": 699, "CAFA": 606, "HGNC-UCL": 557, "NTNU_SB": 532, "CollecTF": 236, "YuBioLab": 131, "GR": 111, "Xenbase": 108, "HGNC": 70, "Alzheimers_University_of_Toronto": 49, "DFLAT": 45, "SYSCILIA_CCNET": 29, "JaponicusDB": 27, "SynGO-UCL": 21, "MENGO": 20, "GDB": 16, "PHI-base": 12, "TIGR": 10, "Roslin_Institute": 10, "DIBU": 6, "InterPro": 1, "Ensembl": 1, "RNAcentral": 1, "GOC": 1, "EnsemblPlants": 1, "RHEA": 1, "EnsemblFungi": 1, "TreeGrafter": 1, "HPA": 1, "EnsemblMetazoa": 1, "EnsemblProtists": 1, "LIFEdb": 1, "iBB": 1 } }, "pmids": { "total": 170801, "by_filtered_taxon": { "NCBITaxon:9606|Homo sapiens": 48840, "NCBITaxon:10090|Mus musculus": 35050, "NCBITaxon:10116|Rattus norvegicus": 24591, "NCBITaxon:7227|Drosophila melanogaster": 13094, "NCBITaxon:559292|Saccharomyces cerevisiae S288C": 12765, "NCBITaxon:3702|Arabidopsis thaliana": 12191, "NCBITaxon:7955|Danio rerio": 7554, "NCBITaxon:83333|Escherichia coli K-12": 7442, "NCBITaxon:6239|Caenorhabditis elegans": 4468, "NCBITaxon:284812|Schizosaccharomyces pombe 972h-": 3668, "NCBITaxon:44689|Dictyostelium discoideum": 1890, "NCBITaxon:237561|Candida albicans SC5314": 1755, "NCBITaxon:83332|Mycobacterium tuberculosis H37Rv": 1228, "NCBITaxon:9913|Bos taurus": 1081, "NCBITaxon:9031|Gallus gallus": 1023, "NCBITaxon:208964|Pseudomonas aeruginosa PAO1": 953, "NCBITaxon:39947|Oryza sativa Japonica Group": 930, "NCBITaxon:8355|Xenopus laevis": 893, "NCBITaxon:185431|Trypanosoma brucei brucei TREU927": 891, "NCBITaxon:227321|Aspergillus nidulans FGSC A4": 823, "NCBITaxon:36329|Plasmodium falciparum 3D7": 822, "NCBITaxon:9823|Sus scrofa": 406, "NCBITaxon:224308|Bacillus subtilis subsp. subtilis str. 168": 375, "NCBITaxon:330879|Aspergillus fumigatus Af293": 322, "NCBITaxon:5664|Leishmania major": 276, "NCBITaxon:4577|Zea mays": 189, "NCBITaxon:9615|Canis lupus familiaris": 177, "NCBITaxon:99287|Salmonella enterica subsp. enterica serovar Typhimurium str. LT2": 163, "NCBITaxon:4081|Solanum lycopersicum": 107, "NCBITaxon:1111708|Synechocystis sp. PCC 6803 substr. Kazusa": 103, "NCBITaxon:243232|Methanocaldococcus jannaschii DSM 2661": 79, "NCBITaxon:3635|Gossypium hirsutum": 73, "NCBITaxon:8364|Xenopus tropicalis": 73, "NCBITaxon:243277|Vibrio cholerae O1 biovar El Tor str. N16961": 68, "NCBITaxon:243274|Thermotoga maritima MSB8": 67, "NCBITaxon:3880|Medicago truncatula": 64, "NCBITaxon:100226|Streptomyces coelicolor A3(2)": 63, "NCBITaxon:3847|Glycine max": 58, "NCBITaxon:367110|Neurospora crassa OR74A": 57, "NCBITaxon:85962|Helicobacter pylori 26695": 57, "NCBITaxon:4097|Nicotiana tabacum": 54, "NCBITaxon:3055|Chlamydomonas reinhardtii": 54, "NCBITaxon:273057|Saccharolobus solfataricus P2": 46, "NCBITaxon:9544|Macaca mulatta": 42, "NCBITaxon:7165|Anopheles gambiae": 39, "NCBITaxon:3562|Spinacia oleracea": 37, "NCBITaxon:294381|Entamoeba histolytica HM-1:IMSS": 37, "NCBITaxon:9796|Equus caballus": 36, "NCBITaxon:93061|Staphylococcus aureus subsp. aureus NCTC 8325": 31, "NCBITaxon:243230|Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539": 31, "NCBITaxon:4113|Solanum tuberosum": 29, "NCBITaxon:4565|Triticum aestivum": 28, "NCBITaxon:184922|Giardia lamblia ATCC 50803": 28, "NCBITaxon:224324|Aquifex aeolicus VF5": 28, "NCBITaxon:169963|Listeria monocytogenes EGD-e": 26, "NCBITaxon:71421|Haemophilus influenzae Rd KW20": 26, "NCBITaxon:402676|Schizosaccharomyces japonicus yFS275": 25, "NCBITaxon:226186|Bacteroides thetaiotaomicron VPI-5482": 23, "NCBITaxon:211586|Shewanella oneidensis MR-1": 21, "NCBITaxon:69014|Thermococcus kodakarensis KOD1": 19, "NCBITaxon:190485|Xanthomonas campestris pv. campestris str. 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