# GORULE violations assigned by CAFA

## SUMMARY

This report generated on 2024-10-22

## Contents

[gorule-0000005](#gorule-0000005)[IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding'']{}

[gorule-0000020](#gorule-0000020)[Automatic repair of annotations to merged or obsoleted terms]{}

[gorule-0000046](#gorule-0000046)[The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.]{}

## MESSAGES

###gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

* total: 2
#### Messages
* WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI	MGI:97750	Ppib	enables	GO:0005515	GO_REF:0000024	ISS	UniProtKB:P24367	F	Peptidyl-prolyl cis-trans isomerase B		protein	taxon:10090	20180925	CAFA	has_input(UniProtKB:Q9CYD3),has_input(UniProtKB:Q3V1T4)	
`
* WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI	MGI:1891221	Crtap	enables	GO:0005515	GO_REF:0000024	ISS	UniProtKB:Q90830	F	Cartilage-associated protein		protein	taxon:10090	20180925	CAFA	has_input(UniProtKB:Q3V1T4),has_input(UniProtKB:P24369)	
`

###gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 1
#### Messages
* WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI	MGI:97798	Ptgs2	involved_in	GO:0043154	PMID:21716255	IMP		P	Prostaglandin G/H synthase 2		protein	taxon:10090	20161108	CAFA		
`

###gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 2
#### Messages
* WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI	MGI:98181	Rrm2	enables	GO:0042803	PMID:8876648	IDA		F	Ribonucleoside-diphosphate reductase subunit M2		protein	taxon:10090	20161103	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI	MGI:88005	Amelx	enables	GO:0042803	PMID:19086270	IDA		F	Amelogenin, X isoform		protein	taxon:10090	20161125	CAFA		
`