# Group: paint - Dataset: paint_cgd

## SUMMARY

This report generated on 2024-10-22

  * Associations: 14487
  * Lines in file (incl headers): 14512
  * Lines skipped: 19
## Header From Original Association File

> !gaf-version: 2.2  
> !Created on Mon Sep 23 12:29:02 2024.  
> !generated-by: PANTHER  
> !date-generated: 2024-09-23  
> !PANTHER version: v.19.0.  
> !GO version: 2024-06-17.  

## Contents

[gorule-0000002](#gorule-0000002)

[gorule-0000005](#gorule-0000005)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000020](#gorule-0000020)

[gorule-0000022](#gorule-0000022)

[gorule-0000028](#gorule-0000028)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[gorule-0000063](#gorule-0000063)

[gorule-0000064](#gorule-0000064)

[other](#other)


## MESSAGES

### gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

* total: 0
### gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

* total: 0
### gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

* total: 0
### gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

* total: 0
### gorule-0000008

No annotations should be made to uninformative high level terms

* total: 13
#### Messages
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000176768	KSP1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine protein kinase	UniProtKB:Q59WD8|PTN002389095	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000176476	CAALFM_C702220CA	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Protein kinase domain-containing protein	UniProtKB:A0A1D8PR30|PTN002803811	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000184399	CAALFM_C100470CA	is_active_in	GO:0043227	GO_REF:0000033	IBA	PANTHER:PTN001806046|SGD:S000006024|UniProtKB:Q6IQ20|UniProtKB:Q58CN9|MGI:MGI:2140885	C	N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D	UniProtKB:Q5ABA9|PTN001280875	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000198706	ATG18	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	Autophagy-related protein 18	UniProtKB:Q5ABA6|PTN000881196	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000190859	HSL1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine-protein kinase HSL1	UniProtKB:Q5AG71|PTN001217041	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000194175	HSV2	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	SVP1-like protein 2	UniProtKB:Q59P11|PTN000881274	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000200723	ATG17	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN001997259|SGD:S000004415	P	Autophagy-related protein 17	UniProtKB:Q5AI71|PTN001997268	protein	taxon:237561	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000201683	ATG21	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	Autophagy-related protein 21	UniProtKB:Q5AI22|PTN000881195	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000181633	PRR2	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Prr2p	UniProtKB:A0A1D8PRA7|PTN002804114	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000189265	SHA3	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine protein kinase	UniProtKB:Q59VY9|PTN001217274	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000191817	GIN4	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine-protein kinase GIN4	UniProtKB:Q59W62|PTN001217044	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000186778	PTK2	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Protein kinase	UniProtKB:Q5A4M7|PTN001552339	protein	taxon:237561	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `CGD	CAL0000189891	JAB1	involved_in	GO:0022414	GO_REF:0000033	IBA	PANTHER:PTN000045369|UniProtKB:Q5BBF1|FB:FBgn0027053|dictyBase:DDB_G0284597|WB:WBGene00000817|SGD:S000002375|TAIR:locus:2017764	P	COP9 signalosome complex subunit 5	UniProtKB:Q59PG6|PTN002572303	protein	taxon:237561	20240820	GO_Central		
`
### gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

* total: 0
### gorule-0000013

Taxon-appropriate annotation check

* total: 16
#### Messages
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000175369	ISC1	is_active_in	GO:0016605	GO_REF:0000033	IBA	PANTHER:PTN001039821|UniProtKB:O95551	C	Inositol phosphosphingolipid phospholipase	UniProtKB:A0A1D8PT33|PTN002697190	protein	taxon:237561	20170427	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000199209	MYO5	is_active_in	GO:0005902	GO_REF:0000033	IBA	PANTHER:PTN001406997|UniProtKB:P47807|MGI:MGI:107732|UniProtKB:O00159|UniProtKB:Q9UBC5|MGI:MGI:1927091	C	Myosin-5	UniProtKB:Q59MQ0|PTN001774308	protein	taxon:237561	20240205	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000176146	GPD2	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|UniProtKB:C8VTT9|MGI:MGI:95679|PomBase:SPBC215.05|SGD:S000002180|SGD:S000005420	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2	UniProtKB:Q59W33|PTN000919790	protein	taxon:237561	20240729	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000178329	MLT1	enables	GO:0015127	GO_REF:0000033	IBA	PANTHER:PTN001200390|SGD:S000003938|SGD:S000002542	F	Multiple drug resistance-associated protein-like transporter 1	UniProtKB:Q5A762|PTN001200394	protein	taxon:237561	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000187689	SSK2	involved_in	GO:0048812	GO_REF:0000033	IBA	PANTHER:PTN000685430|WB:WBGene00003247|RGD:1359135|MGI:MGI:1915919|RGD:621590	P	MAP kinase kinase kinase	UniProtKB:A0A1D8PM87|PTN002807752	protein	taxon:237561	20201002	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000192384	MKK2	involved_in	GO:0000196	GO_REF:0000033	IBA	PANTHER:PTN001220604|SGD:S000006061|SGD:S000005757|PomBase:SPBC543.07	P	Mitogen-activated protein kinase kinase	UniProtKB:A0A1D8PHG7|PTN002807940	protein	taxon:237561	20210603	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000187259	VPS23	involved_in	GO:0008333	GO_REF:0000033	IBA	PANTHER:PTN000592420|WB:WBGene00015658|RGD:3909	P	Ubiquitin-binding ESCRT-I subunit protein	UniProtKB:Q59WF8|PTN001152318	protein	taxon:237561	20211108	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000189420	CAALFM_CR09490WA	is_active_in	GO:0016605	GO_REF:0000033	IBA	PANTHER:PTN008542367|RGD:621227|UniProtKB:Q9UER7	C	Uncharacterized protein	UniProtKB:A0A1D8PTZ2|PTN008542362	protein	taxon:237561	20240730	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000189420	CAALFM_CR09490WA	enables	GO:0050681	GO_REF:0000033	IBA	PANTHER:PTN008542367|RGD:621227|UniProtKB:Q9UER7	F	Uncharacterized protein	UniProtKB:A0A1D8PTZ2|PTN008542362	protein	taxon:237561	20221208	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000178686	YPT72	is_active_in	GO:0045335	GO_REF:0000033	IBA	PANTHER:PTN000635769|dictyBase:DDB_G0269236|MGI:MGI:2442295|UniProtKB:Q9NP90|UniProtKB:P51151|WB:WBGene00004271|UniProtKB:Q96AH8|UniProtKB:P51149	C	Rab family GTPase	UniProtKB:A0A1D8PHR9|PTN002786237	protein	taxon:237561	20201002	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000178854	YPT7	is_active_in	GO:0045335	GO_REF:0000033	IBA	PANTHER:PTN000635769|dictyBase:DDB_G0269236|MGI:MGI:2442295|UniProtKB:Q9NP90|UniProtKB:P51151|WB:WBGene00004271|UniProtKB:Q96AH8|UniProtKB:P51149	C	Ypt7p	UniProtKB:Q5AI78|PTN001178558	protein	taxon:237561	20201002	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000179549	YCF1	enables	GO:0015127	GO_REF:0000033	IBA	PANTHER:PTN001200390|SGD:S000003938|SGD:S000002542	F	ATP-binding cassette glutathione S-conjugate transporter	UniProtKB:A0A1D8PR42|PTN002795618	protein	taxon:237561	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000200026	GPD1	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|UniProtKB:C8VTT9|MGI:MGI:95679|PomBase:SPBC215.05|SGD:S000002180|SGD:S000005420	F	Glycerol-3-phosphate dehydrogenase [NAD(+)]	UniProtKB:Q59XU9|PTN000919791	protein	taxon:237561	20240729	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000183742	CAALFM_CR08200CA	enables	GO:0015127	GO_REF:0000033	IBA	PANTHER:PTN001200390|SGD:S000003938|SGD:S000002542	F	ATP-binding cassette bilirubin transporter	UniProtKB:A0A1D8PTN6|PTN002795617	protein	taxon:237561	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000186831	NRG1	part_of	GO:0031519	GO_REF:0000033	IBA	PANTHER:PTN000360827|MGI:MGI:99150|FB:FBgn0002521	C	Transcriptional regulator NRG1	UniProtKB:Q5A0E5|PTN001421614	protein	taxon:237561	20170602	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `CGD	CAL0000179965	TEP1	involved_in	GO:0048870	GO_REF:0000033	IBA	PANTHER:PTN000959472|dictyBase:DDB_G0286557|MGI:MGI:109583	P	Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase	UniProtKB:Q59LZ6|PTN000959564	protein	taxon:237561	20200305	GO_Central		
`
### gorule-0000015

Dual species taxon check

* total: 0
### gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 0
### gorule-0000017

IDA annotations must not have a With/From entry

* total: 0
### gorule-0000018

IPI annotations require a With/From entry

* total: 0
### gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 42
#### Messages
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003867) -- `CGD	CAL0000176906	UGA11	enables	GO:0003867	GO_REF:0000033	IBA	PANTHER:PTN000944876|UniProtKB:P94427|UniProtKB:P80404|PomBase:SPAC19D5.07|UniProtKB:P22256|UniProtKB:P50457|SGD:S000003251	F	4-aminobutyrate aminotransferase	UniProtKB:Q5AHE2|PTN001380157	protein	taxon:237561	20240919	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003867) -- `CGD	CAL0000181031	UGA1	enables	GO:0003867	GO_REF:0000033	IBA	PANTHER:PTN000944876|UniProtKB:P94427|UniProtKB:P80404|PomBase:SPAC19D5.07|UniProtKB:P22256|UniProtKB:P50457|SGD:S000003251	F	4-aminobutyrate aminotransferase	UniProtKB:A0A1D8PH55|PTN002877425	protein	taxon:237561	20240919	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0035308) -- `CGD	CAL0000186920	CAALFM_C302920WA	involved_in	GO:0035308	GO_REF:0000033	IBA	PANTHER:PTN001309504|SGD:S000005101	P	mRNA stability protein	UniProtKB:Q5AEI3|PTN000820579	protein	taxon:237561	20230602	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000275) -- `CGD	CAL0000197920	ATP16	part_of	GO:0000275	GO_REF:0000033	IBA	PANTHER:PTN000352457|SGD:S000002162|TAIR:locus:2171022|UniProtKB:Q586H1	C	ATP synthase subunit delta, mitochondrial	UniProtKB:A0A1D8PUD2|PTN002675502	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000276) -- `CGD	CAL0000189026	ATP8	part_of	GO:0000276	GO_REF:0000033	IBA	PANTHER:PTN002188719|UniProtKB:P0CY41	C	ATP synthase protein 8	UniProtKB:Q9B8D3|PTN002188730	protein	taxon:237561	20240801	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000276) -- `CGD	CAL0000186811	ATP9	part_of	GO:0000276	GO_REF:0000033	IBA	PANTHER:PTN000003243|UniProtKB:Q57WQ3	C	ATP synthase subunit 9, mitochondrial	UniProtKB:Q9B8D5|PTN001598722	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003721) -- `CGD	CAL0000184329	TERT	enables	GO:0003721	GO_REF:0000033	IBA	PANTHER:PTN000249074|SGD:S000004310|CGD:CAL0000184329|UniProtKB:O14746|PomBase:SPBC29A3.14c|UniProtKB:Q1PS67	F	Telomerase reverse transcriptase	UniProtKB:A0A1D8PEA0|PTN002635843	protein	taxon:237561	20200808	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004024) -- `CGD	CAL0000175789	FDH3	enables	GO:0004024	GO_REF:0000033	IBA	PANTHER:PTN000191653|UniProtKB:P08319|UniProtKB:P00325|MGI:MGI:1349472|UniProtKB:P25437|UniProtKB:P40394|UniProtKB:P07327	F	S-(hydroxymethyl)glutathione dehydrogenase	UniProtKB:A0A1D8PU61|PTN002888657	protein	taxon:237561	20181004	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004310) -- `CGD	CAL0000181444	ERG9	enables	GO:0004310	GO_REF:0000033	IBA	PANTHER:PTN001700951|SGD:S000001233|TAIR:locus:2139514|RGD:61834|PomBase:SPBC646.05c	F	Squalene synthase ERG9	UniProtKB:A0A1D8PI71|PTN002614878	protein	taxon:237561	20200807	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005355) -- `CGD	CAL0000194465	CAALFM_C112930CA	enables	GO:0005355	GO_REF:0000033	IBA	PANTHER:PTN002512237|TAIR:locus:2168494|TAIR:locus:2097780	F	Major facilitator superfamily (MFS) profile domain-containing protein	UniProtKB:Q5AL54|PTN001174221	protein	taxon:237561	20240802	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005746) -- `CGD	CAL0000188012	CAALFM_C108610CA	part_of	GO:0005746	GO_REF:0000033	IBA	PANTHER:PTN001997468|PomBase:SPAC1565.01	C	HIG1 domain-containing protein	UniProtKB:Q59QA9|PTN001997482	protein	taxon:237561	20240731	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005746) -- `CGD	CAL0000192266	CAALFM_C301540WA	part_of	GO:0005746	GO_REF:0000033	IBA	PANTHER:PTN001997468|PomBase:SPAC1565.01	C	HIG1 domain-containing protein	UniProtKB:Q5AJA1|PTN001997481	protein	taxon:237561	20240731	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000196083	COB	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000444161|UniProtKB:P00157|UniProtKB:P00156|UniProtKB:P18946	C	Cytochrome b	UniProtKB:P0C8L0|PTN001829945	protein	taxon:237561	20240731	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000201360	QCR8	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000950370|UniProtKB:O14949	C	Cytochrome b-c1 complex subunit 8	UniProtKB:A0A1D8PHA2|PTN002636917	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000176689	CAALFM_C304080WA	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000393767|UniProtKB:P07919	C	Ubiquinol--cytochrome-c reductase subunit 6	UniProtKB:A0A1D8PJT8|PTN002692110	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000181035	QCR9	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000312316|UniProtKB:Q9UDW1	C	Complex III subunit 9	UniProtKB:A0A1D8PLP3|PTN002659202	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000191527	RIP1	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000015359|UniProtKB:P47985|TAIR:locus:2181670|TAIR:locus:2181675|PomBase:SPBC16H5.06	C	Cytochrome b-c1 complex subunit Rieske, mitochondrial	UniProtKB:A0A1D8PJX3|PTN002562285	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000192434	CYT1	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000030137|UniProtKB:P08574	C	Ubiquinol--cytochrome-c reductase catalytic subunit	UniProtKB:A0A1D8PHA3|PTN002567679	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `CGD	CAL0000200050	QCR7	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000246311|UniProtKB:P14927|UniProtKB:Q871K1	C	Cytochrome b-c1 complex subunit 7	UniProtKB:Q5ABS1|PTN000947427	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `CGD	CAL0000185793	CAALFM_C703880CA	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000076140|UniProtKB:P13073|UniProtKB:P00423|PomBase:SPCC338.10c	C	Genetic interactor of prohibitin 7, mitochondrial	UniProtKB:A0A1D8PRH4|PTN002581967	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `CGD	CAL0000187344	COX1	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000046096|UniProtKB:P00395|MGI:MGI:102504|PomBase:SPMIT.01	C	Cytochrome c oxidase subunit 1	UniProtKB:P0C8K9|PTN001625204	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `CGD	CAL0000187468	COX6	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000367750|MGI:MGI:88474|PomBase:SPAC1B2.04|UniProtKB:P20674	C	Cytochrome c oxidase subunit 6, mitochondrial	UniProtKB:A0A1D8PH08|PTN002681303	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `CGD	CAL0000179426	COX5	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000076140|UniProtKB:P13073|UniProtKB:P00423|PomBase:SPCC338.10c	C	Cytochrome c oxidase subunit Va	UniProtKB:Q5APK5|PTN000842471	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `CGD	CAL0000194951	COX13	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000161401|PomBase:SPCC1739.09c|UniProtKB:P12074	C	Cytochrome c oxidase subunit	UniProtKB:Q5ALV9|PTN000896965	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005753) -- `CGD	CAL0000195054	ATP6	part_of	GO:0005753	GO_REF:0000033	IBA	PANTHER:PTN000151035|UniProtKB:P00846|UniProtKB:P00847	C	ATP synthase subunit a	UniProtKB:Q9B8D4|PTN001686071	protein	taxon:237561	20240918	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005753) -- `CGD	CAL0000193508	ATP2	part_of	GO:0005753	GO_REF:0000033	IBA	PANTHER:PTN000390017|UniProtKB:P06576|PomBase:SPAC222.12c|TAIR:locus:504956338|RGD:621368|UniProtKB:P00829|TAIR:locus:505006590|UniProtKB:Q57XX1	C	ATP synthase subunit beta	UniProtKB:A0A1D8PKZ9|PTN002689466	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `CGD	CAL0000201912	ALG11	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000282963|SGD:S000004993|TAIR:locus:2065080|PomBase:SPCC330.08|UniProtKB:Q2TAA5	P	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	UniProtKB:Q59S72|PTN000968956	protein	taxon:237561	20240801	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `CGD	CAL0000183581	ALG6	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000275691|PomBase:SPBC342.01c|SGD:S000005528|UniProtKB:Q9Y672|UniProtKB:Q9BVK2|SGD:S000005593	P	Alpha-1,3-glucosyltransferase	UniProtKB:A0A1D8PTC1|PTN000964707	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `CGD	CAL0000176395	ALG2	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000282458|SGD:S000003033|UniProtKB:Q9H553	P	Alpha-1,3_1,6-mannosyltransferase ALG2	UniProtKB:Q59LF2|PTN000968999	protein	taxon:237561	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `CGD	CAL0000180957	ALG8	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000275691|PomBase:SPBC342.01c|SGD:S000005528|UniProtKB:Q9Y672|UniProtKB:Q9BVK2|SGD:S000005593	P	Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	UniProtKB:Q5AJD2|PTN000964742	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008272) -- `CGD	CAL0000195204	CAALFM_C603390WA	involved_in	GO:0008272	GO_REF:0000033	IBA	PANTHER:PTN000756618|RGD:621430|FB:FBgn0027610|FB:FBgn0033248	P	Mitochondrial thiamine pyrophosphate carrier 1	UniProtKB:A0A1D8PQ62|PTN002898019	protein	taxon:237561	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008272) -- `CGD	CAL0000182617	SUL2	involved_in	GO:0008272	GO_REF:0000033	IBA	PANTHER:PTN000212046|UniProtKB:Q5B9Q0|MGI:MGI:2159728|MGI:MGI:2385894|RGD:620136|SGD:S000000498|SGD:S000004082|UniProtKB:Q9BXS9|UniProtKB:Q86WA9|MGI:MGI:892977|MGI:MGI:2384791|RGD:620622|UniProtKB:Q8TE54|ZFIN:ZDB-GENE-030131-1566|UniProtKB:Q9BEG8|FB:FBgn0036770|UniProtKB:P50443|UniProtKB:Q96RN1	P	Sulfate permease	UniProtKB:A0A1D8PLL2|PTN002624538	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032450) -- `CGD	CAL0000190188	MAL2	enables	GO:0032450	GO_REF:0000033	IBA	PANTHER:PTN000820510|CGD:CAL0000194458	F	Oligo-1,6-glucosidase IMA1	UniProtKB:A0A1D8PUB9|PTN002570834	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032450) -- `CGD	CAL0000194458	CAALFM_C504940WA	enables	GO:0032450	GO_REF:0000033	IBA	PANTHER:PTN000820510|CGD:CAL0000194458	F	Glycosyl hydrolase family 13 catalytic domain-containing protein	UniProtKB:A0A1D8PP39|PTN002570833	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000180378	CAALFM_C402170CA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN000280657|SGD:S000003112	P	Hydrolase	UniProtKB:Q5AMS2|PTN000967940	protein	taxon:237561	20201205	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000186337	CAALFM_C505000CA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN000280657|SGD:S000003112	P	Lipase	UniProtKB:A0A1D8PP40|PTN002647781	protein	taxon:237561	20201205	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000178042	CAALFM_C301510WA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN002000332|SGD:S000005038	P	Phosphatidate phosphatase	UniProtKB:A0A1D8PJ98|PTN002821850	protein	taxon:237561	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000193865	CAALFM_C204830WA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN000280657|SGD:S000003112	P	DUF676 domain-containing protein	UniProtKB:A0A1D8PH95|PTN002647785	protein	taxon:237561	20201205	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000176683	CAALFM_C300890CA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN000280657|SGD:S000003112	P	DUF676 domain-containing protein	UniProtKB:A0A1D8PJ34|PTN002647780	protein	taxon:237561	20201205	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `CGD	CAL0000181267	CAALFM_C110690WA	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN002919262|SGD:S000003263	P	AB hydrolase-1 domain-containing protein	UniProtKB:Q59WE9|PTN000863362	protein	taxon:237561	20220331	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0046950) -- `CGD	CAL0000177837	CAALFM_C207240CA	involved_in	GO:0046950	GO_REF:0000033	IBA	PANTHER:PTN000344750|MGI:MGI:1891061|UniProtKB:P55809|MGI:MGI:1914291|RGD:1584008	P	Succinyl-CoA:3-ketoacid-coenzyme A transferase	UniProtKB:Q59Z19|PTN001009059	protein	taxon:237561	20200506	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070774) -- `CGD	CAL0000177800	YDC1	enables	GO:0070774	GO_REF:0000033	IBA	PANTHER:PTN000310820|UniProtKB:Q9NUN7|SGD:S000000387|MGI:MGI:1913440	F	Alkaline dihydroceramidase	UniProtKB:Q5A0Z2|PTN000987010	protein	taxon:237561	20200810	GO_Central		
`
### gorule-0000022

Check for, and filter, annotations made to retracted publications

* total: 0
### gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

* total: 0
### gorule-0000029

IEAs should be less than one year old.

* total: 0
### gorule-0000030

Obsolete GO_REFs are not allowed

* total: 0
### gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

* total: 0
### gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

* total: 0
### gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

* total: 0
### gorule-0000043

Check for valid combination of evidence code and GO_REF

* total: 0
### gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 1
#### Messages
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `CGD	CAL0000187583	CSU57	enables	GO:0042803	GO_REF:0000033	IBA	PANTHER:PTN000322234|UniProtKB:Q9BRG1	F	ESCRT-II subunit protein	UniProtKB:Q5AK78|PTN000994430	protein	taxon:237561	20170228	GO_Central		
`
### gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

* total: 0
### gorule-0000055

References should have only one ID per ID space

* total: 0
### gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

* total: 0
### gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 38
#### Messages
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000196444	SIZ1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000081660|SGD:S000002817|WB:WBGene00001574|SGD:S000005682|FB:FBgn0026160	C	SUMO ligase	UniProtKB:A0A1D8PCK0|PTN002583842	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000193582	STH1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	RSC chromatin remodeling complex ATPase subunit	UniProtKB:A0A1D8PJG4|PTN002584649	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000187175	CAALFM_C103360WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002473914|FB:FBgn0262519|PomBase:SPAC1783.05|RGD:1582725|PomBase:SPBP35G2.10|UniProtKB:Q14839|UniProtKB:Q12873|FB:FBgn0023395|SGD:S000000966|MGI:MGI:1344395|MGI:MGI:1344380|MGI:MGI:3036258	C	Chromatin-remodeling ATPase	UniProtKB:A0A1D8PCZ6|PTN002898821	protein	taxon:237561	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000177059	SIN3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000269659|FB:FBgn0022764|PomBase:SPBC12C2.10c|TAIR:locus:2194559|UniProtKB:Q96ST3|SGD:S000005364|RGD:1311598|TAIR:locus:2032382|PomBase:SPAC23C11.15|TAIR:locus:2147845|TAIR:locus:2100277|PomBase:SPBC1734.16c|TAIR:locus:2025956	C	Transcriptional regulator	UniProtKB:A0A1D8PCC3|PTN002643604	protein	taxon:237561	20240730	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000178884	PDS5	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000292173|UniProtKB:Q29RF7|PomBase:SPAC110.02|UniProtKB:Q9NTI5	C	Pds5p	UniProtKB:A0A1D8PHZ6|PTN002652185	protein	taxon:237561	20211216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000200763	NAP1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000221934|SGD:S000005190|PomBase:SPBC36B7.08c|UniProtKB:Q8I2W3	C	Nucleosome assembly protein 1	UniProtKB:Q5AAI8|PTN000933759	protein	taxon:237561	20231108	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000190837	IRR1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000127652|UniProtKB:Q8WVM7|PomBase:SPCC4E9.01c|PomBase:SPAC17H9.20|UniProtKB:Q8N3U4|FB:FBgn0020616|WB:WBGene00004738|MGI:MGI:1098658|MGI:MGI:1098583	C	Irr1p	UniProtKB:A0A1D8PFW4|PTN002597969	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000181007	HIR2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000352669|TAIR:locus:2076013|UniProtKB:P54198|MGI:MGI:99430	C	Protein HIR2	UniProtKB:Q5AGM0|PTN001013799	protein	taxon:237561	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000186831	NRG1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000360827|MGI:MGI:99150|TAIR:locus:1005716361|UniProtKB:P25490|FB:FBgn0002521	C	Transcriptional regulator NRG1	UniProtKB:Q5A0E5|PTN001421614	protein	taxon:237561	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000180094	TYE7	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001757366|SGD:S000005871|PomBase:SPBC354.05c|PomBase:SPBC19C2.09	C	Carbohydrate metabolism regulator TYE7	UniProtKB:Q5AL36|PTN005341351	protein	taxon:237561	20230720	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000174681	ECO1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000118027|UniProtKB:Q5FWF5|UniProtKB:Q56NI9|MGI:MGI:1919238	C	N-acetyltransferase ECO1	UniProtKB:A0A1D8PE50|PTN005258008	protein	taxon:237561	20220417	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000186528	DCC1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000333642|UniProtKB:Q9BVC3	C	Dcc1p	UniProtKB:A0A1D8PQK7|PTN002667639	protein	taxon:237561	20170228	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000183504	HMS1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001757366|SGD:S000005871|PomBase:SPBC354.05c|PomBase:SPBC19C2.09	C	Hms1p	UniProtKB:A0A1D8PMZ4|PTN005341354	protein	taxon:237561	20230720	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000177967	VPS75	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000221934|SGD:S000005190|PomBase:SPBC36B7.08c|UniProtKB:Q8I2W3	C	Vacuolar protein sorting-associated protein 75	UniProtKB:A0A1D8PT39|PTN002627703	protein	taxon:237561	20231108	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000179732	ASF1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000247832|UniProtKB:Q9NVP2|TAIR:locus:2033359|UniProtKB:Q9Y294|MGI:MGI:1914179	C	Histone chaperone ASF1	UniProtKB:Q59MV1|PTN000948084	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000194639	CAALFM_C105750CA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Protein ECM5	UniProtKB:A0A1D8PDM2|PTN002581469	protein	taxon:237561	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000199580	CAALFM_C400260WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Histone demethylase	UniProtKB:A0A1D8PL24|PTN002581470	protein	taxon:237561	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000192125	CAALFM_CR07600WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	DNA-dependent ATPase	UniProtKB:A0A1D8PTJ0|PTN002584710	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000182993	SAS3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN004172926|UniProtKB:Q8WYB5|SGD:S000005770|UniProtKB:O95251|CGD:CAL0000179231|UniProtKB:Q92794|TAIR:locus:2144776|MGI:MGI:1919307|PomBase:SPAC637.12c|FB:FBgn0034975|TAIR:locus:2174764|MGI:MGI:2182799|ZFIN:ZDB-GENE-021022-3|SGD:S000000148	C	histone acetyltransferase	UniProtKB:A0A1D8PS09|PTN002578060	protein	taxon:237561	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000189036	ADR1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	Transcriptional regulator ADR1	UniProtKB:Q5AF56|PTN002399559	protein	taxon:237561	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000199586	CAALFM_C402690WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	[histone H3]-trimethyl-L-lysine(9) demethylase	UniProtKB:A0A1D8PLN0|PTN002581567	protein	taxon:237561	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000199454	SLR1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002689978|FB:FBgn0263396|RGD:1310906	C	Slr1p	UniProtKB:A0A1D8PIP0|PTN008729656	protein	taxon:237561	20240213	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000192526	ISW2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	ISWI chromatin-remodeling complex ATPase ISW2	UniProtKB:Q5A310|PTN002246357	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000200778	CAALFM_C113880CA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	C2H2-type domain-containing protein	UniProtKB:Q5AKV1|PTN002395736	protein	taxon:237561	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000174178	SET2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002739645|WB:WBGene00003222|FB:FBgn0039559|TAIR:locus:2126714	C	Histone-lysine N-methyltransferase, H3 lysine-36 specific	UniProtKB:Q59XV0|PTN001875069	protein	taxon:237561	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000175561	CAALFM_C306150WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	C2H2-type domain-containing protein	UniProtKB:A0A1D8PKE5|PTN002399489	protein	taxon:237561	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000196701	CAALFM_C301310WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	ATPase	UniProtKB:Q5AJ72|PTN002245710	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000175511	CAALFM_C402570CA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	[histone H3]-trimethyl-L-lysine(9) demethylase	UniProtKB:A0A1D8PLL0|PTN002581566	protein	taxon:237561	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000192256	CAALFM_C107340WA	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	Chromatin-remodeling ATPase	UniProtKB:A0A1D8PE13|PTN002584767	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000196167	FPR3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001314507|PomBase:SPBC1347.02|FB:FBgn0013269|SGD:S000004441	C	FK506-binding protein 3	UniProtKB:Q59VR3|PTN000828455	protein	taxon:237561	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000192524	FGR3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000081660|SGD:S000002817|WB:WBGene00001574|SGD:S000005682|FB:FBgn0026160	C	Fgr3p	UniProtKB:Q5A645|PTN000845860	protein	taxon:237561	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `UniProtKB	Q5A4W8	BDF1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000524852|PomBase:SPAC631.02|MGI:MGI:1888520|SGD:S000004391|PomBase:SPCC1450.02	C	Bromodomain-containing factor 1	UniProtKB:Q5A4W8|PTN001111512	protein	taxon:237561	20210812	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000181382	CPH2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001757366|SGD:S000005871|PomBase:SPBC354.05c|PomBase:SPBC19C2.09	C	Transcription factor CPH2	UniProtKB:Q59RL7|PTN001395369	protein	taxon:237561	20230720	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000180184	TRY5	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	Transcriptional regulator of yeast form adherence 5	UniProtKB:Q5A4K7|PTN005124039	protein	taxon:237561	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000197832	HIR1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000352669|TAIR:locus:2076013|UniProtKB:P54198|MGI:MGI:99430	C	Protein HIR1	UniProtKB:Q5ACW8|PTN001013801	protein	taxon:237561	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000176922	SNF2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	SWI_SNF catalytic subunit	UniProtKB:A0A1D8PGK4|PTN002584650	protein	taxon:237561	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000196344	MET32	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	C2H2-type domain-containing protein	UniProtKB:A0A1D8PIQ0|PTN008674437	protein	taxon:237561	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `CGD	CAL0000179231	ESA1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN004172926|UniProtKB:Q8WYB5|SGD:S000005770|UniProtKB:O95251|CGD:CAL0000179231|UniProtKB:Q92794|TAIR:locus:2144776|MGI:MGI:1919307|PomBase:SPAC637.12c|FB:FBgn0034975|TAIR:locus:2174764|MGI:MGI:2182799|ZFIN:ZDB-GENE-021022-3|SGD:S000000148	C	Histone acetyltransferase ESA1	UniProtKB:Q5A7Q2|PTN000834960	protein	taxon:237561	20240729	GO_Central		
`
### gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

* total: 0
### gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

* total: 0
### other

* total: 0