# Group: paint - Dataset: paint_pombase

## SUMMARY

This report generated on 2024-10-22

  * Associations: 13171
  * Lines in file (incl headers): 13199
  * Lines skipped: 22
## Header From Original Association File

> !gaf-version: 2.2  
> !Created on Mon Sep 23 12:29:02 2024.  
> !generated-by: PANTHER  
> !date-generated: 2024-09-23  
> !PANTHER version: v.19.0.  
> !GO version: 2024-06-17.  

## Contents

[gorule-0000002](#gorule-0000002)

[gorule-0000005](#gorule-0000005)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000020](#gorule-0000020)

[gorule-0000022](#gorule-0000022)

[gorule-0000028](#gorule-0000028)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[gorule-0000063](#gorule-0000063)

[gorule-0000064](#gorule-0000064)

[other](#other)


## MESSAGES

### gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

* total: 0
### gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

* total: 0
### gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

* total: 0
### gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

* total: 0
### gorule-0000008

No annotations should be made to uninformative high level terms

* total: 10
#### Messages
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC458.06	atg1803	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	SVP1-like protein 2	UniProtKB:Q9P3W2|PTN000132327	protein	taxon:4896	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPBC21.07c	ppk24	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine-protein kinase ppk24, mitochondrial	UniProtKB:O94647|PTN000678892	protein	taxon:4896	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC1687.13c	csn5	involved_in	GO:0022414	GO_REF:0000033	IBA	PANTHER:PTN000045369|UniProtKB:Q5BBF1|FB:FBgn0027053|dictyBase:DDB_G0284597|WB:WBGene00000817|SGD:S000002375|TAIR:locus:2017764	P	COP9 signalosome complex subunit 5	UniProtKB:O94454|PTN000045425	protein	taxon:4896	20240820	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPBC19C2.05	pat1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Negative regulator of sexual conjugation and meiosis	UniProtKB:P08092|PTN000679457	protein	taxon:4896	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC823.16c	atg1802	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	Autophagy-related protein 21	UniProtKB:Q9P6N1|PTN000132237	protein	taxon:4896	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPBC16E9.13	ksp1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Serine_threonine-protein kinase ksp1	UniProtKB:O14328|PTN000681683	protein	taxon:4896	20240321	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC10F6.11c	atg17	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN001997259|SGD:S000004415	P	Autophagy-related protein 17	UniProtKB:O42651|PTN001997261	protein	taxon:4896	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPCC70.05c	nnk1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	serine/threonine protein kinase Nnk1	UniProtKB:O74526|PTN000681684	protein	taxon:4896	20240321	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC589.07c	atg1801	involved_in	GO:0030242	GO_REF:0000033	IBA	PANTHER:PTN000132136|SGD:S000001917	P	Autophagy-related protein 18	UniProtKB:Q9HDZ7|PTN000132238	protein	taxon:4896	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `PomBase	SPAC644.06c	cdr1	involved_in	GO:0007093	GO_REF:0000033	IBA	PANTHER:PTN008613667|UniProtKB:Q8TDC3|SGD:S000000529|SGD:S000002915|SGD:S000001584	P	Mitosis inducer protein kinase cdr1	UniProtKB:P07334|PTN000681385	protein	taxon:4896	20240321	GO_Central		
`
### gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

* total: 0
### gorule-0000013

Taxon-appropriate annotation check

* total: 20
#### Messages
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC1685.05	htr11	involved_in	GO:0043065	GO_REF:0000033	IBA	PANTHER:PTN000533451|CGD:CAL0000176472	P	serine protease	UniProtKB:O74325|PTN000533547	protein	taxon:4896	20240606	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC336.12c	cdc10	part_of	GO:0033309	GO_REF:0000033	IBA	PANTHER:PTN000917496|SGD:S000004172|SGD:S000000913	C	Start control protein cdc10	UniProtKB:P01129|PTN000572571	protein	taxon:4896	20181004	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC17C9.08	pnu1	involved_in	GO:0006309	GO_REF:0000033	IBA	PANTHER:PTN000359598|SGD:S000003744|WB:WBGene00000787|MGI:MGI:1261433	P	Nuclease 1, mitochondrial	UniProtKB:Q10480|PTN000359697	protein	taxon:4896	20201205	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC22F3.09c	res2	part_of	GO:0033309	GO_REF:0000033	IBA	PANTHER:PTN000917496|SGD:S000004172|SGD:S000000913	C	Cell division cycle-related protein res2_pct1	UniProtKB:P41412|PTN000917514	protein	taxon:4896	20181004	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC27D7.08c	mtl16	enables	GO:0052907	GO_REF:0000033	IBA	PANTHER:PTN000333539|UniProtKB:P75782	F	23S rRNA/U6 snRNA (adenine-N(6))-methyltransferase Mtl16	UniProtKB:O42662|PTN000333588	protein	taxon:4896	20170228	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAPB1A10.10c	ypt71	is_active_in	GO:0045335	GO_REF:0000033	IBA	PANTHER:PTN000635769|dictyBase:DDB_G0269236|MGI:MGI:2442295|UniProtKB:Q9NP90|UniProtKB:P51151|WB:WBGene00004271|UniProtKB:Q96AH8|UniProtKB:P51149	C	Ypt_Rab-type GTPase ypt71	UniProtKB:Q9HDY0|PTN000635841	protein	taxon:4896	20201002	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC215.05	gpd1	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|UniProtKB:C8VTT9|MGI:MGI:95679|PomBase:SPBC215.05|SGD:S000002180|SGD:S000005420	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1	UniProtKB:P21696|PTN000198101	protein	taxon:4896	20240729	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC9E9.15	SPAC9E9.15	involved_in	GO:0010257	GO_REF:0000033	IBA	PANTHER:PTN000995762|FB:FBgn0039689|UniProtKB:Q9Y375|WB:WBGene00008225	P	mitochondrial protein complex assembly protein	UniProtKB:O14297|PTN000995805	protein	taxon:4896	20170602	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC146.13c	myo1	is_active_in	GO:0005902	GO_REF:0000033	IBA	PANTHER:PTN001406997|UniProtKB:P47807|MGI:MGI:107732|UniProtKB:O00159|UniProtKB:Q9UBC5|MGI:MGI:1927091	C	Myosin-1	UniProtKB:Q9Y7Z8|PTN000321843	protein	taxon:4896	20240205	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBP23A10.12	frg1	is_active_in	GO:0055120	GO_REF:0000033	IBA	PANTHER:PTN000309119|WB:WBGene00014177	C	Protein frg1	UniProtKB:Q9P7X3|PTN000309173	protein	taxon:4896	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC336.05c	hen1	involved_in	GO:0034587	GO_REF:0000033	IBA	PANTHER:PTN000483941|ZFIN:ZDB-GENE-050417-387|WB:WBGene00015349|MGI:MGI:1913965|FB:FBgn0033686	P	small RNA 2'-O-methyltransferase Hen1	UniProtKB:Q9UST9|PTN000483974	protein	taxon:4896	20231109	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC405.04c	ypt7	is_active_in	GO:0045335	GO_REF:0000033	IBA	PANTHER:PTN000635769|dictyBase:DDB_G0269236|MGI:MGI:2442295|UniProtKB:Q9NP90|UniProtKB:P51151|WB:WBGene00004271|UniProtKB:Q96AH8|UniProtKB:P51149	C	Ypt_Rab-type GTPase ypt7	UniProtKB:O94655|PTN000635842	protein	taxon:4896	20201002	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC222.10c	byr4	involved_in	GO:0031578	GO_REF:0000033	IBA	PANTHER:PTN002172173|SGD:S000003814	P	Protein byr4	UniProtKB:Q10951|PTN002172175	protein	taxon:4896	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC800.02	whi5	part_of	GO:0033309	GO_REF:0000033	IBA	PANTHER:PTN002000919|SGD:S000005609	C	Cell cycle transcriptional repressor whi5	UniProtKB:Q9HGL9|PTN002000921	protein	taxon:4896	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC167.01	ire1	involved_in	GO:0070059	GO_REF:0000033	IBA	PANTHER:PTN000359335|MGI:MGI:1349436|MGI:MGI:1930134	P	Sensor for unfolded proteins in the ER ire1	UniProtKB:O94537|PTN000359407	protein	taxon:4896	20181005	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC23D3.04c	gpd2	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|UniProtKB:C8VTT9|MGI:MGI:95679|PomBase:SPBC215.05|SGD:S000002180|SGD:S000005420	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2	UniProtKB:Q09845|PTN000198100	protein	taxon:4896	20240729	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPAC23G3.12c	htr12	involved_in	GO:0043065	GO_REF:0000033	IBA	PANTHER:PTN000533451|CGD:CAL0000176472	P	serine protease, involved in lipid metabolism	UniProtKB:Q9P7S1|PTN000533460	protein	taxon:4896	20240606	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC4F6.12	pxl1	is_active_in	GO:0030018	GO_REF:0000033	IBA	PANTHER:PTN000654055|RGD:61963|MGI:MGI:1338762|MGI:MGI:1341092	C	paxillin-like protein Pxl1	UniProtKB:O74398|PTN001198366	protein	taxon:4896	20170427	GO_Central
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC725.16	res1	part_of	GO:0033309	GO_REF:0000033	IBA	PANTHER:PTN000917496|SGD:S000004172|SGD:S000000913	C	Cell division cycle-related protein res1_sct1	UniProtKB:P33520|PTN000917513	protein	taxon:4896	20181004	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `PomBase	SPBC543.07	pek1	involved_in	GO:0000196	GO_REF:0000033	IBA	PANTHER:PTN001220604|SGD:S000006061|SGD:S000005757|PomBase:SPBC543.07	P	MAP kinase kinase skh1_pek1	UniProtKB:Q9Y884|PTN000721458	protein	taxon:4896	20210603	GO_Central		
`
### gorule-0000015

Dual species taxon check

* total: 0
### gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 0
### gorule-0000017

IDA annotations must not have a With/From entry

* total: 0
### gorule-0000018

IPI annotations require a With/From entry

* total: 0
### gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 33
#### Messages
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003867) -- `PomBase	SPAC19D5.07	uga1	enables	GO:0003867	GO_REF:0000033	IBA	PANTHER:PTN000944876|UniProtKB:P94427|UniProtKB:P80404|PomBase:SPAC19D5.07|UniProtKB:P22256|UniProtKB:P50457|SGD:S000003251	F	4-aminobutyrate aminotransferase	UniProtKB:O13837|PTN000241282	protein	taxon:4896	20240919	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0035308) -- `PomBase	SPAC10F6.16	igo1	involved_in	GO:0035308	GO_REF:0000033	IBA	PANTHER:PTN001309504|SGD:S000005101	P	mRNA stability protein mug134	UniProtKB:P79058|PTN002233609	protein	taxon:4896	20230602	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000275) -- `PomBase	SPBC13E7.04	atp16	part_of	GO:0000275	GO_REF:0000033	IBA	PANTHER:PTN000352457|SGD:S000002162|TAIR:locus:2171022|UniProtKB:Q586H1	C	ATP synthase subunit delta, mitochondrial	UniProtKB:Q9P6R6|PTN000352507	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000276) -- `PomBase	SPMIT.09	atp8	part_of	GO:0000276	GO_REF:0000033	IBA	PANTHER:PTN002188719|UniProtKB:P0CY41	C	ATP synthase protein 8	UniProtKB:P21536|PTN002188721	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000276) -- `PomBase	SPMIT.10	atp9	part_of	GO:0000276	GO_REF:0000033	IBA	PANTHER:PTN000003243|UniProtKB:Q57WQ3	C	ATP synthase subunit 9, mitochondrial	UniProtKB:P21537|PTN001598719	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003721) -- `PomBase	SPBC29A3.14c	trt1	enables	GO:0003721	GO_REF:0000033	IBA	PANTHER:PTN000249074|SGD:S000004310|CGD:CAL0000184329|UniProtKB:O14746|PomBase:SPBC29A3.14c|UniProtKB:Q1PS67	F	Telomerase reverse transcriptase	UniProtKB:O13339|PTN000249120	protein	taxon:4896	20200808	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004024) -- `PomBase	SPCC13B11.04c	fmd3	enables	GO:0004024	GO_REF:0000033	IBA	PANTHER:PTN000191653|UniProtKB:P08319|UniProtKB:P00325|MGI:MGI:1349472|UniProtKB:P25437|UniProtKB:P40394|UniProtKB:P07327	F	glutathione-dependent formaldehyde dehydrogenase	UniProtKB:O74540|PTN001363886	protein	taxon:4896	20181004	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004024) -- `PomBase	SPBC1539.07c	fmd1	enables	GO:0004024	GO_REF:0000033	IBA	PANTHER:PTN000191653|UniProtKB:P08319|UniProtKB:P00325|MGI:MGI:1349472|UniProtKB:P25437|UniProtKB:P40394|UniProtKB:P07327	F	glutathione-dependent formaldehyde dehydrogenase	UniProtKB:P78870|PTN000191800	protein	taxon:4896	20181004	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004310) -- `PomBase	SPBC646.05c	erg9	enables	GO:0004310	GO_REF:0000033	IBA	PANTHER:PTN001700951|SGD:S000001233|TAIR:locus:2139514|RGD:61834|PomBase:SPBC646.05c	F	Squalene synthase	UniProtKB:P36596|PTN000179328	protein	taxon:4896	20200807	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005746) -- `PomBase	SPAC1565.01	rcf2	part_of	GO:0005746	GO_REF:0000033	IBA	PANTHER:PTN001997468|PomBase:SPAC1565.01	C	Respiratory supercomplex factor 2 homolog C1565.01	UniProtKB:Q9P3B2|PTN001997473	protein	taxon:4896	20240731	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPAC1782.07	qcr8	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000950370|UniProtKB:O14949	C	Cytochrome b-c1 complex subunit 8	UniProtKB:P50523|PTN000251842	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPBC16C6.08c	qcr6	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000393767|UniProtKB:P07919	C	Cytochrome b-c1 complex subunit 6	UniProtKB:O42932|PTN000393819	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPMIT.05	cob1	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000444161|UniProtKB:P00157|UniProtKB:P00156|UniProtKB:P18946	C	Cytochrome b	UniProtKB:P05501|PTN001829942	protein	taxon:4896	20240731	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPCC737.02c	qcr7	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000246311|UniProtKB:P14927|UniProtKB:Q871K1	C	Cytochrome b-c1 complex subunit 7	UniProtKB:O74533|PTN000246367	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPBC29A3.18	cyt1	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000030137|UniProtKB:P08574	C	Cytochrome c1, heme protein, mitochondrial	UniProtKB:O59680|PTN000030183	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPCC1682.01	qcr9	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000312316|UniProtKB:Q9UDW1	C	Cytochrome b-c1 complex subunit 9	UniProtKB:O74433|PTN000312358	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005750) -- `PomBase	SPBC16H5.06	rip1	part_of	GO:0005750	GO_REF:0000033	IBA	PANTHER:PTN000015359|UniProtKB:P47985|TAIR:locus:2181670|TAIR:locus:2181675|PomBase:SPBC16H5.06	C	Cytochrome b-c1 complex subunit Rieske, mitochondrial	UniProtKB:Q09154|PTN000015415	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `PomBase	SPCC338.10c	cox5	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000076140|UniProtKB:P13073|UniProtKB:P00423|PomBase:SPCC338.10c	C	Cytochrome c oxidase polypeptide 5, mitochondrial	UniProtKB:O74988|PTN001322642	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `PomBase	SPAC1B2.04	cox6	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000367750|MGI:MGI:88474|PomBase:SPAC1B2.04|UniProtKB:P20674	C	Cytochrome c oxidase subunit 6, mitochondrial	UniProtKB:Q9UTF6|PTN000367802	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `PomBase	SPCC1739.09c	cox13	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000161401|PomBase:SPCC1739.09c|UniProtKB:P12074	C	Cytochrome c oxidase subunit 13, mitochondrial	UniProtKB:O74471|PTN000161477	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005751) -- `PomBase	SPMIT.01	cox1	part_of	GO:0005751	GO_REF:0000033	IBA	PANTHER:PTN000046096|UniProtKB:P00395|MGI:MGI:102504|PomBase:SPMIT.01	C	Cytochrome c oxidase subunit 1	UniProtKB:P07657|PTN001625201	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005753) -- `PomBase	SPAC222.12c	atp2	part_of	GO:0005753	GO_REF:0000033	IBA	PANTHER:PTN000390017|UniProtKB:P06576|PomBase:SPAC222.12c|TAIR:locus:504956338|RGD:621368|UniProtKB:P00829|TAIR:locus:505006590|UniProtKB:Q57XX1	C	ATP synthase subunit beta, mitochondrial	UniProtKB:P22068|PTN000390078	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005753) -- `PomBase	SPMIT.07	atp6	part_of	GO:0005753	GO_REF:0000033	IBA	PANTHER:PTN000151035|UniProtKB:P00846|UniProtKB:P00847	C	ATP synthase subunit a	UniProtKB:P21535|PTN001686068	protein	taxon:4896	20240918	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `PomBase	SPCC330.08	alg11	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000282963|SGD:S000004993|TAIR:locus:2065080|PomBase:SPCC330.08|UniProtKB:Q2TAA5	P	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	UniProtKB:O74878|PTN000282447	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `PomBase	SPBC342.01c	alg6	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000275691|PomBase:SPBC342.01c|SGD:S000005528|UniProtKB:Q9Y672|UniProtKB:Q9BVK2|SGD:S000005593	P	Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase	UniProtKB:O43053|PTN001391918	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `PomBase	SPBC11B10.01	alg2	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000282458|SGD:S000003033|UniProtKB:Q9H553	P	Alpha-1,3_1,6-mannosyltransferase alg2	UniProtKB:Q96WW6|PTN000282508	protein	taxon:4896	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006490) -- `PomBase	SPAC17C9.07	alg8	involved_in	GO:0006490	GO_REF:0000033	IBA	PANTHER:PTN000275691|PomBase:SPBC342.01c|SGD:S000005528|UniProtKB:Q9Y672|UniProtKB:Q9BVK2|SGD:S000005593	P	Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	UniProtKB:Q10479|PTN000275743	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008272) -- `PomBase	SPAC869.05c	sul2	involved_in	GO:0008272	GO_REF:0000033	IBA	PANTHER:PTN000212046|UniProtKB:Q5B9Q0|MGI:MGI:2159728|MGI:MGI:2385894|RGD:620136|SGD:S000000498|SGD:S000004082|UniProtKB:Q9BXS9|UniProtKB:Q86WA9|MGI:MGI:892977|MGI:MGI:2384791|RGD:620622|UniProtKB:Q8TE54|ZFIN:ZDB-GENE-030131-1566|UniProtKB:Q9BEG8|FB:FBgn0036770|UniProtKB:P50443|UniProtKB:Q96RN1	P	plasma membrane sulfate transmembrane transporter Sul2	UniProtKB:Q9URY8|PTN000212427	protein	taxon:4896	20240729	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008272) -- `PomBase	SPBC3H7.02	sul1	involved_in	GO:0008272	GO_REF:0000033	IBA	PANTHER:PTN000212046|UniProtKB:Q5B9Q0|MGI:MGI:2159728|MGI:MGI:2385894|RGD:620136|SGD:S000000498|SGD:S000004082|UniProtKB:Q9BXS9|UniProtKB:Q86WA9|MGI:MGI:892977|MGI:MGI:2384791|RGD:620622|UniProtKB:Q8TE54|ZFIN:ZDB-GENE-030131-1566|UniProtKB:Q9BEG8|FB:FBgn0036770|UniProtKB:P50443|UniProtKB:Q96RN1	P	plasma membrane sulfate transmembrane transporter Sul1	UniProtKB:O74377|PTN000212426	protein	taxon:4896	20240729	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0032450) -- `PomBase	SPBC1683.07	mal1	enables	GO:0032450	GO_REF:0000033	IBA	PANTHER:PTN000820510|CGD:CAL0000194458	F	Alpha-glucosidase	UniProtKB:Q9P6J3|PTN000040228	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `PomBase	SPAC22H12.03	SPAC22H12.03	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN002919262|SGD:S000003263	P	mitochondrial hydrolase	UniProtKB:O94437|PTN000106297	protein	taxon:4896	20220331	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `PomBase	SPBC29B5.04c	app1	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN002000332|SGD:S000005038	P	phosphatidate phosphatase converting phosphatidate to diacylglycerol, App1	UniProtKB:Q9HGP1|PTN002000337	protein	taxon:4896	20170228	GO_Central
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) -- `PomBase	SPAC4A8.10	rog1	involved_in	GO:0044255	GO_REF:0000033	IBA	PANTHER:PTN000280657|SGD:S000003112	P	acylglycerol lipase	UniProtKB:O14162|PTN000773851	protein	taxon:4896	20201205	GO_Central
`
### gorule-0000022

Check for, and filter, annotations made to retracted publications

* total: 0
### gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

* total: 0
### gorule-0000029

IEAs should be less than one year old.

* total: 0
### gorule-0000030

Obsolete GO_REFs are not allowed

* total: 0
### gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

* total: 0
### gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

* total: 0
### gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

* total: 0
### gorule-0000043

Check for valid combination of evidence code and GO_REF

* total: 0
### gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 1
#### Messages
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `PomBase	SPBC4B4.06	vps25	enables	GO:0042803	GO_REF:0000033	IBA	PANTHER:PTN000322234|UniProtKB:Q9BRG1	F	Vacuolar protein-sorting-associated protein 25	UniProtKB:O74967|PTN000322278	protein	taxon:4896	20170228	GO_Central		
`
### gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

* total: 0
### gorule-0000055

References should have only one ID per ID space

* total: 0
### gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

* total: 0
### gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 47
#### Messages
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC25A8.01c	fft3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	ATP-dependent helicase fft3	UniProtKB:O42861|PTN002245410	protein	taxon:4896	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC17G8.13c	mst2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN004172926|UniProtKB:Q8WYB5|SGD:S000005770|UniProtKB:O95251|CGD:CAL0000179231|UniProtKB:Q92794|TAIR:locus:2144776|MGI:MGI:1919307|PomBase:SPAC637.12c|FB:FBgn0034975|TAIR:locus:2174764|MGI:MGI:2182799|ZFIN:ZDB-GENE-021022-3|SGD:S000000148	C	Histone acetyltransferase mst2	UniProtKB:Q10325|PTN000065260	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1039.05c	klf1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	Zinc finger protein klf1	UniProtKB:Q9US36|PTN002396349	protein	taxon:4896	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC31F10.13c	hip1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000352669|TAIR:locus:2076013|UniProtKB:P54198|MGI:MGI:99430	C	Protein hir1	UniProtKB:P87314|PTN000352724	protein	taxon:4896	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC16C6.10	chp2	part_of	GO:0005721	GO_REF:0000033	IBA	PANTHER:PTN000517042|MGI:MGI:108515|PomBase:SPBC16C6.10|dictyBase:DDB_G0283023|MGI:MGI:105369|PomBase:SPAC18G6.02c|PomBase:SPAC664.01c|FB:FBgn0003607|dictyBase:DDB_G0282987|MGI:MGI:109372	C	Chromo domain-containing protein 2	UniProtKB:O42934|PTN000517039	protein	taxon:4896	20210819	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1B3.17	clr2	part_of	GO:0033553	GO_REF:0000033	IBA	PANTHER:PTN002211078|PomBase:SPAC1B3.17	C	Cryptic loci regulator 2	UniProtKB:O13881|PTN002211080	protein	taxon:4896	20170901	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC110.02	pds5	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000292173|UniProtKB:Q29RF7|PomBase:SPAC110.02|UniProtKB:Q9NTI5	C	Sister chromatid cohesion protein pds5	UniProtKB:Q9HFF5|PTN000292252	protein	taxon:4896	20211216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC2D10.11c	nap2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000221934|SGD:S000005190|PomBase:SPBC36B7.08c|UniProtKB:Q8I2W3	C	histone H2A-H2B chaperone Nap2	UniProtKB:P78920|PTN000222083	protein	taxon:4896	20231108	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBP4H10.06c	cut14	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000434684|FB:FBgn0027783|PomBase:SPBP4H10.06c|WB:WBGene00003367	C	Structural maintenance of chromosomes protein 2	UniProtKB:P41003|PTN000434742	protein	taxon:4896	20220416	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC83.07	jmj3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Lid2 complex component jmj3	UniProtKB:O94691|PTN000075330	protein	taxon:4896	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC664.01c	swi6	part_of	GO:0005721	GO_REF:0000033	IBA	PANTHER:PTN000517042|MGI:MGI:108515|PomBase:SPBC16C6.10|dictyBase:DDB_G0283023|MGI:MGI:105369|PomBase:SPAC18G6.02c|PomBase:SPAC664.01c|FB:FBgn0003607|dictyBase:DDB_G0282987|MGI:MGI:109372	C	Chromatin-associated protein swi6	UniProtKB:P40381|PTN000517040	protein	taxon:4896	20210819	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC1235.05c	fft2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	ATP-dependent helicase fft2	UniProtKB:O74842|PTN002245411	protein	taxon:4896	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC343.11c	msc1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Multicopy suppressor of chk1 protein 1	UniProtKB:Q9UT79|PTN000075168	protein	taxon:4896	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1687.18c	ssl3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000483609|MGI:MGI:1921799|UniProtKB:Q9Y6X3	C	MAU2 chromatid cohesion factor homolog	UniProtKB:O94459|PTN001849532	protein	taxon:4896	20170228	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC1347.02	ani1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001314507|PomBase:SPBC1347.02|FB:FBgn0013269|SGD:S000004441	C	FK506-binding protein 39 kDa	UniProtKB:O74191|PTN000054251	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC1198.04c	zas1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	Zinc finger protein zas1	UniProtKB:Q9UTS5|PTN002396348	protein	taxon:4896	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC31A2.15c	dcc1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000333642|UniProtKB:Q9BVC3	C	Sister chromatid cohesion protein dcc1	UniProtKB:Q09732|PTN001002046	protein	taxon:4896	20170228	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC6F12.02	rst2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	Zinc finger protein rst2	UniProtKB:P78871|PTN005124052	protein	taxon:4896	20201216	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC19C2.09	sre1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001757366|SGD:S000005871|PomBase:SPBC354.05c|PomBase:SPBC19C2.09	C	Sterol regulatory element-binding protein 1	UniProtKB:Q9UUD1|PTN000179776	protein	taxon:4896	20230720	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC637.12c	mst1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN004172926|UniProtKB:Q8WYB5|SGD:S000005770|UniProtKB:O95251|CGD:CAL0000179231|UniProtKB:Q92794|TAIR:locus:2144776|MGI:MGI:1919307|PomBase:SPAC637.12c|FB:FBgn0034975|TAIR:locus:2174764|MGI:MGI:2182799|ZFIN:ZDB-GENE-021022-3|SGD:S000000148	C	Histone acetyltransferase mst1	UniProtKB:O94446|PTN000065261	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC20G8.08c	fft1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	ATP-dependent helicase fft1	UniProtKB:P87114|PTN002245412	protein	taxon:4896	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1250.01	snf21	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	Chromatin structure-remodeling complex subunit snf21	UniProtKB:Q9UTN6|PTN002245276	protein	taxon:4896	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC36B7.08c	ccp1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000221934|SGD:S000005190|PomBase:SPBC36B7.08c|UniProtKB:Q8I2W3	C	CENP-A histone disassembly chaperone Ccp1	UniProtKB:Q9HGN2|PTN000222306	protein	taxon:4896	20231108	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1B3.17	clr2	part_of	GO:0031934	GO_REF:0000033	IBA	PANTHER:PTN002211078|PomBase:SPAC1B3.17	C	Cryptic loci regulator 2	UniProtKB:O13881|PTN002211080	protein	taxon:4896	20170901	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1783.04c	hst4	part_of	GO:0031934	GO_REF:0000033	IBA	PANTHER:PTN000872167|PomBase:SPAC1783.04c	C	NAD-dependent protein deacetylase hst4	UniProtKB:Q9UR39|PTN000119293	protein	taxon:4896	20180419	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1002.05c	jmj2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Jumonji_ARID domain-containing protein 2	UniProtKB:Q9US53|PTN000075170	protein	taxon:4896	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1687.05	pli1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000081660|SGD:S000002817|WB:WBGene00001574|SGD:S000005682|FB:FBgn0026160	C	E3 SUMO-protein ligase pli1	UniProtKB:O94451|PTN000081849	protein	taxon:4896	20240205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC1783.05	hrp1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002473914|FB:FBgn0262519|PomBase:SPAC1783.05|RGD:1582725|PomBase:SPBP35G2.10|UniProtKB:Q14839|UniProtKB:Q12873|FB:FBgn0023395|SGD:S000000966|MGI:MGI:1344395|MGI:MGI:1344380|MGI:MGI:3036258	C	Chromodomain helicase hrp1	UniProtKB:Q9US25|PTN000084662	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC354.05c	sre2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001757366|SGD:S000005871|PomBase:SPBC354.05c|PomBase:SPBC19C2.09	C	Putative transcription factor sre2	UniProtKB:O43019|PTN000179775	protein	taxon:4896	20230720	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC3G6.01	hrp3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002473914|FB:FBgn0262519|PomBase:SPAC1783.05|RGD:1582725|PomBase:SPBP35G2.10|UniProtKB:Q14839|UniProtKB:Q12873|FB:FBgn0023395|SGD:S000000966|MGI:MGI:1344395|MGI:MGI:1344380|MGI:MGI:3036258	C	Chromodomain helicase hrp3	UniProtKB:O14139|PTN000084663	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC23C11.15	pst2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000269659|FB:FBgn0022764|PomBase:SPBC12C2.10c|TAIR:locus:2194559|UniProtKB:Q96ST3|SGD:S000005364|RGD:1311598|TAIR:locus:2032382|PomBase:SPAC23C11.15|TAIR:locus:2147845|TAIR:locus:2100277|PomBase:SPBC1734.16c|TAIR:locus:2025956	C	Paired amphipathic helix protein pst2	UniProtKB:O13919|PTN000269736	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC12C2.10c	pst1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000269659|FB:FBgn0022764|PomBase:SPBC12C2.10c|TAIR:locus:2194559|UniProtKB:Q96ST3|SGD:S000005364|RGD:1311598|TAIR:locus:2032382|PomBase:SPAC23C11.15|TAIR:locus:2147845|TAIR:locus:2100277|PomBase:SPBC1734.16c|TAIR:locus:2025956	C	Paired amphipathic helix protein pst1	UniProtKB:Q09750|PTN000269738	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC4E9.01c	rec11	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000127652|UniProtKB:Q8WVM7|PomBase:SPCC4E9.01c|PomBase:SPAC17H9.20|UniProtKB:Q8N3U4|FB:FBgn0020616|WB:WBGene00004738|MGI:MGI:1098658|MGI:MGI:1098583	C	Meiotic recombination protein rec11	UniProtKB:Q92380|PTN000127770	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC17H9.20	psc3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000127652|UniProtKB:Q8WVM7|PomBase:SPCC4E9.01c|PomBase:SPAC17H9.20|UniProtKB:Q8N3U4|FB:FBgn0020616|WB:WBGene00004738|MGI:MGI:1098658|MGI:MGI:1098583	C	Cohesin subunit psc3	UniProtKB:O13816|PTN000127771	protein	taxon:4896	20240729	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC1734.16c	pst3	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000269659|FB:FBgn0022764|PomBase:SPBC12C2.10c|TAIR:locus:2194559|UniProtKB:Q96ST3|SGD:S000005364|RGD:1311598|TAIR:locus:2032382|PomBase:SPAC23C11.15|TAIR:locus:2147845|TAIR:locus:2100277|PomBase:SPBC1734.16c|TAIR:locus:2025956	C	Paired amphipathic helix protein pst3	UniProtKB:O74755|PTN000269737	protein	taxon:4896	20240730	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC1620.14c	snf22	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001649185|MGI:MGI:1935129|SGD:S000001388|SGD:S000005831|MGI:MGI:95453|PomBase:SPAC25A8.01c|UniProtKB:O60264|UniProtKB:P51531|PomBase:SPAC1250.01|PomBase:SPCC1620.14c|FB:FBgn0000212|CGD:CAL0000193582|TAIR:locus:2173644|MGI:MGI:99603|FB:FBgn0011604|MGI:MGI:88192|RGD:621728|SGD:S000000449|CGD:CAL0000176922|UniProtKB:Q585S8|UniProtKB:P51532|WB:WBGene00002169|SGD:S000005816|UniProtKB:P28370|MGI:MGI:1935127|SGD:S000000017|TAIR:locus:2182978|TAIR:locus:2081081	C	SWI_SNF chromatin-remodeling complex subunit snf22	UniProtKB:O94421|PTN001326019	protein	taxon:4896	20240304	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC29B12.02c	set2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002739645|WB:WBGene00003222|FB:FBgn0039559|TAIR:locus:2126714	C	Histone-lysine N-methyltransferase, H3 lysine-36 specific	UniProtKB:O14026|PTN002556504	protein	taxon:4896	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBC15D4.03	slm9	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000352669|TAIR:locus:2076013|UniProtKB:P54198|MGI:MGI:99430	C	Histone transcription regulator slm9	UniProtKB:O74309|PTN000352723	protein	taxon:4896	20240206	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC364.06	nap1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000221934|SGD:S000005190|PomBase:SPBC36B7.08c|UniProtKB:Q8I2W3	C	histone H2A-H2B chaperone Nap1	UniProtKB:O59797|PTN000222084	protein	taxon:4896	20231108	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC1450.02	bdf1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000524852|PomBase:SPAC631.02|MGI:MGI:1888520|SGD:S000004391|PomBase:SPCC1450.02	C	SWR1 complex bromodomain subunit bdf1	UniProtKB:Q9Y7N0|PTN000524794	protein	taxon:4896	20210812	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC631.02	bdf2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000524852|PomBase:SPAC631.02|MGI:MGI:1888520|SGD:S000004391|PomBase:SPCC1450.02	C	BET family double bromodomain protein Bdf2	UniProtKB:Q9HGP4|PTN000524793	protein	taxon:4896	20210812	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC663.05c	asf1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000247832|UniProtKB:Q9NVP2|TAIR:locus:2033359|UniProtKB:Q9Y294|MGI:MGI:1914179	C	histone H3-H4 chaperone Asf1	UniProtKB:O74515|PTN000247909	protein	taxon:4896	20240205	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBP35G2.10	mit1	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN002473914|FB:FBgn0262519|PomBase:SPAC1783.05|RGD:1582725|PomBase:SPBP35G2.10|UniProtKB:Q14839|UniProtKB:Q12873|FB:FBgn0023395|SGD:S000000966|MGI:MGI:1344395|MGI:MGI:1344380|MGI:MGI:3036258	C	Chromatin remodeling factor mit1	UniProtKB:Q9P793|PTN000085079	protein	taxon:4896	20240801	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC11D3.17	SPAC11D3.17	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN008083030|PomBase:SPAC6F12.02|PomBase:SPAC1039.05c	C	DNA-binding transcription factor, zf-fungal binuclear cluster type	UniProtKB:Q10096|PTN002307830	protein	taxon:4896	20201216	GO_Central
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPCC970.12	mis18	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN001046424|UniProtKB:O43482|PomBase:SPCC970.12	C	Kinetochore protein mis18	UniProtKB:Q9P802|PTN001443976	protein	taxon:4896	20201205	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPBP19A11.06	lid2	part_of	GO:0000785	GO_REF:0000033	IBA	PANTHER:PTN000075014|UniProtKB:Q336N8|UniProtKB:Q9H3R0|FB:FBgn0033233|MGI:MGI:2442355|PomBase:SPAC343.11c|FB:FBgn0036004|PomBase:SPBP19A11.06|MGI:MGI:2446210|FB:FBgn0031759|MGI:MGI:1924054|RGD:1307528|MGI:MGI:3606484	C	Lid2 complex component lid2	UniProtKB:Q9HDV4|PTN000075169	protein	taxon:4896	20230510	GO_Central		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025 -- `PomBase	SPAC18G6.02c	chp1	part_of	GO:0005721	GO_REF:0000033	IBA	PANTHER:PTN000517042|MGI:MGI:108515|PomBase:SPBC16C6.10|dictyBase:DDB_G0283023|MGI:MGI:105369|PomBase:SPAC18G6.02c|PomBase:SPAC664.01c|FB:FBgn0003607|dictyBase:DDB_G0282987|MGI:MGI:109372	C	Chromo domain-containing protein 1	UniProtKB:Q10103|PTN000517213	protein	taxon:4896	20210819	GO_Central		
`
### gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

* total: 0
### gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

* total: 0
### other

* total: 0