goslim virus.owl
type: Ontology
version IRI: goslim virus.owl
version info: 2024-07-19

definition
type: AnnotationProperty

term tracker item
type: AnnotationProperty
database_cross_reference: IAO:0000233
has_obo_namespace: external
id: term_tracker_item
is class level: true
is metadata tag: true
shorthand: term_tracker_item

has ontology root term
type: AnnotationProperty
database_cross_reference: IAO:0000700
has_obo_namespace: external
id: has_ontology_root_term
is class level: true
is metadata tag: true
shorthand: has_ontology_root_term

term replaced by
type: AnnotationProperty

chebi ph7 3
type: AnnotationProperty
comment: Rhea list of ChEBI terms representing the major species at pH 7.3.
sub property of: subset_property

gocheck do not annotate
type: AnnotationProperty
comment: Term not to be used for direct annotation
sub property of: subset_property

gocheck obsoletion candidate
type: AnnotationProperty
comment: Terms planned for obsoletion
sub property of: subset_property

goslim agr
type: AnnotationProperty
comment: AGR slim
sub property of: subset_property

goslim aspergillus
type: AnnotationProperty
comment: Aspergillus GO slim
sub property of: subset_property

goslim candida
type: AnnotationProperty
comment: Candida GO slim
sub property of: subset_property

goslim chembl
type: AnnotationProperty
comment: ChEMBL protein targets summary
sub property of: subset_property

goslim drosophila
type: AnnotationProperty
comment: Drosophila GO slim
sub property of: subset_property

goslim euk cellular processes ribbon
type: AnnotationProperty
comment: GO ribbon for eukaroytic cellular processes
sub property of: subset_property

goslim flybase ribbon
type: AnnotationProperty
comment: Insecta GO ribbon slim
sub property of: subset_property

goslim generic
type: AnnotationProperty
comment: Generic GO slim
sub property of: subset_property

goslim metagenomics
type: AnnotationProperty
comment: Metagenomics GO slim
sub property of: subset_property

goslim mouse
type: AnnotationProperty
comment: Mouse GO slim
sub property of: subset_property

goslim pir
type: AnnotationProperty
comment: PIR GO slim
sub property of: subset_property

goslim plant
type: AnnotationProperty
comment: Plant GO slim
sub property of: subset_property

goslim plant ribbon
type: AnnotationProperty
comment: Plant GO ribbon
sub property of: subset_property

goslim pombe
type: AnnotationProperty
comment: Fission yeast GO slim
sub property of: subset_property

goslim prokaryote
type: AnnotationProperty
comment: GO subset for prokaryotes
sub property of: subset_property

goslim prokaryote ribbon
type: AnnotationProperty
comment: Prokaryote GO ribbon slim
sub property of: subset_property

goslim synapse
type: AnnotationProperty
comment: synapse GO slim
sub property of: subset_property

goslim virus
type: AnnotationProperty
comment: GO subset for viruses
sub property of: subset_property

goslim yeast
type: AnnotationProperty
comment: Yeast GO slim
sub property of: subset_property

label approved by the SynGO project
type: AnnotationProperty
sub property of: synonym_type_property

Systematic synonym
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

consider
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
inverse of: has part
type: TransitiveProperty
database_cross_reference: BFO:0000050
has_obo_namespace: external
id: part_of
shorthand: part_of

has part
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000051
has_obo_namespace: external
id: has_part
shorthand: has_part

occurs in
type: ObjectProperty
property chain axiom: part of
database_cross_reference: BFO:0000066
has_obo_namespace: external
id: occurs_in
shorthand: occurs_in

starts during
type: ObjectProperty
database_cross_reference: RO:0002091
has_obo_namespace: external
id: starts_during
shorthand: starts_during

happens during
type: ObjectProperty
sub property of: ends during
type: TransitiveProperty
database_cross_reference: RO:0002092
has_obo_namespace: external
id: happens_during
shorthand: happens_during

ends during
type: ObjectProperty
database_cross_reference: RO:0002093
has_obo_namespace: external
id: ends_during
shorthand: ends_during

regulates
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: RO:0002211
has_obo_namespace: external
id: regulates
shorthand: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates
database_cross_reference: RO:0002212
has_obo_namespace: external
id: negatively_regulates
shorthand: negatively_regulates

positively regulates
type: ObjectProperty
sub property of: regulates
property chain axiom: negatively regulates
database_cross_reference: RO:0002213
has_obo_namespace: external
id: positively_regulates
shorthand: positively_regulates

symbiont-mediated killing of host cell
type: Class
definition: A process mediated by a symbiont that results in the death of a cell in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
term tracker item: https://github.com/geneontology/go-ontology/issues/27342
has_exact_synonym: killing by symbiont of host cells
has_obo_namespace: biological_process
has_related_synonym: pathogenesis
id: GO:0001907
in_subset: goslim virus

Axiom
annotated source: symbiont-mediated killing of host cell
annotated property: definition
annotated target: A process mediated by a symbiont that results in the death of a cell in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: GOC:add
database_cross_reference: PMID:11123917
database_cross_reference: PMID:22992735
database_cross_reference: PMID:23230295
database_cross_reference: PMID:26633512

viral process
type: Class
definition: A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
RO_0002161: NCBITaxon 4896
has_alternative_id: GO:0022415
database_cross_reference: Wikipedia:Viral_life_cycle
has_exact_synonym: virus process
has_obo_namespace: biological_process
has_related_synonym: viral infection
has_related_synonym: virulence
id: GO:0016032
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim virus
comment: See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'.

Axiom
annotated source: viral process
annotated property: definition
annotated target: A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah

Axiom
annotated source: viral process
annotated property: has_exact_synonym
annotated target: virus process
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

viral capsid
type: Class
definition: The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
has_alternative_id: GO:0046728
database_cross_reference: Wikipedia:Capsid
has_obo_namespace: cellular_component
id: GO:0019028
in_subset: goslim chembl
in_subset: goslim virus

Axiom
annotated source: viral capsid
annotated property: definition
annotated target: The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
database_cross_reference: GOC:mtg_sensu
database_cross_reference: ISBN:0198506732

modulation by virus of host process
type: Class
subclass of: viral process
subclass of: modulation by symbiont of host process
definition: The process in which a virus effects a change in the structure or processes of its host organism.
term tracker item: https://github.com/geneontology/go-ontology/issues/18605
term tracker item: https://github.com/geneontology/go-ontology/issues/18719
created by: jl
creation date: 2012-08-01T13:41:00Z
has_alternative_id: GO:0044661
has_alternative_id: GO:0044792
has_broad_synonym: virus-host interaction
database_cross_reference: VZ:886
has_exact_synonym: host-virus interaction
has_exact_synonym: modulation by virus of host anatomy or process
has_exact_synonym: viral interaction with host
has_exact_synonym: viral-host process
has_exact_synonym: virus-host process
has_obo_namespace: biological_process
has_related_synonym: disruption by virus of host cell
has_related_synonym: modulation by virus of host anatomical structure or process
has_related_synonym: modulation by virus of host morphology or physiology
id: GO:0019048
in_subset: goslim virus

Axiom
annotated source: modulation by virus of host process
annotated property: has_broad_synonym
annotated target: virus-host interaction
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Vertebrate host-virus interactions
type: Axiom
annotated source: modulation by virus of host process
annotated property: database_cross_reference
annotated target: VZ:886

Axiom
annotated source: modulation by virus of host process
annotated property: has_exact_synonym
annotated target: host-virus interaction
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: modulation by virus of host process
annotated property: has_exact_synonym
annotated target: modulation by virus of host anatomy or process
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: modulation by virus of host process
annotated property: has_exact_synonym
annotated target: viral-host process
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: modulation by virus of host process
annotated property: has_exact_synonym
annotated target: virus-host process
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: modulation by virus of host process
annotated property: has_related_synonym
annotated target: modulation by virus of host anatomical structure or process
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: modulation by virus of host process
annotated property: definition
annotated target: The process in which a virus effects a change in the structure or processes of its host organism.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0781718325
database_cross_reference: UniProtKB-KW:KW-0945

virus-mediated perturbation of host defense response
type: Class
subclass of: modulation by virus of host process
definition: A process in which a virus interferes with the ability of the host to mount a defense in response to its presence. Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction.
term tracker item: https://github.com/geneontology/go-ontology/issues/23043
term tracker item: https://github.com/geneontology/go-ontology/issues/25016
has_alternative_id: GO:0019052
has_alternative_id: GO:0019053
has_alternative_id: GO:0030683
has_alternative_id: GO:0050690
has_exact_synonym: mitigation of host defenses by virus
has_exact_synonym: perturbation of host defense response by virus
has_exact_synonym: regulation of defense response to virus by virus
has_exact_synonym: viral regulation of antiviral response
has_narrow_synonym: evasion of host defenses by virus
has_narrow_synonym: mitigation of host antiviral defense response
has_narrow_synonym: regulation by virus of antiviral response
has_narrow_synonym: viral host defence evasion
has_narrow_synonym: viral host defense evasion
has_obo_namespace: biological_process
id: GO:0019049
in_subset: goslim virus

Axiom
annotated source: virus-mediated perturbation of host defense response
annotated property: definition
annotated target: A process in which a virus interferes with the ability of the host to mount a defense in response to its presence. Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: ISBN:1555811272

viral life cycle
type: Class
subclass of: viral process
definition: A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
has_alternative_id: GO:0019067
has_narrow_synonym: viral assembly, maturation, egress, and release
has_obo_namespace: biological_process
has_related_synonym: lytic viral life cycle
has_related_synonym: viral infectious cycle
has_related_synonym: viral replication
id: GO:0019058
in_subset: goslim virus

Axiom
annotated source: viral life cycle
annotated property: definition
annotated target: A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
database_cross_reference: ISBN:1555811272

Axiom
annotated source: viral life cycle
annotated property: has_narrow_synonym
annotated target: viral assembly, maturation, egress, and release
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: viral life cycle
annotated property: has_related_synonym
annotated target: viral infectious cycle
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: viral life cycle
annotated property: has_related_synonym
annotated target: viral replication
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

virion attachment to host cell
type: Class
subclass of: Restriction
  on property: part of
  some values from: viral life cycle
definition: The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
database_cross_reference: VZ:956
has_exact_synonym: viral absorption
has_narrow_synonym: virion attachment to host cell surface receptor
has_obo_namespace: biological_process
has_related_synonym: viral attachment to host cell
id: GO:0019062
in_subset: goslim virus

Axiom
annotated source: virion attachment to host cell
annotated property: definition
annotated target: The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl
database_cross_reference: UniProtKB-KW:KW-1161
database_cross_reference: VZ:956

Viral attachment to host cell
type: Axiom
annotated source: virion attachment to host cell
annotated property: database_cross_reference
annotated target: VZ:956

Axiom
annotated source: virion attachment to host cell
annotated property: has_related_synonym
annotated target: viral attachment to host cell
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

virion assembly
type: Class
subclass of: viral process
subclass of: Restriction
  on property: part of
  some values from: viral life cycle
definition: A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
has_alternative_id: GO:0042963
has_exact_synonym: viral assembly
has_exact_synonym: viral particle assembly
has_exact_synonym: virion assembly and maintenance
has_exact_synonym: virion organization
has_exact_synonym: virus assembly
has_exact_synonym: virus particle assembly
has_narrow_synonym: bacteriophage assembly
has_narrow_synonym: phage assembly
has_obo_namespace: biological_process
id: GO:0019068
in_subset: goslim virus

Axiom
annotated source: virion assembly
annotated property: definition
annotated target: A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
database_cross_reference: ISBN:0121585336

Axiom
annotated source: virion assembly
annotated property: has_exact_synonym
annotated target: virion assembly and maintenance
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: virion assembly
annotated property: has_exact_synonym
annotated target: virion organization
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: virion assembly
annotated property: has_exact_synonym
annotated target: virus assembly
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb

Axiom
annotated source: virion assembly
annotated property: has_narrow_synonym
annotated target: bacteriophage assembly
database_cross_reference: GOC:bm

Axiom
annotated source: virion assembly
annotated property: has_narrow_synonym
annotated target: phage assembly
database_cross_reference: GOC:bm

viral genome packaging
type: Class
subclass of: viral process
subclass of: Restriction
  on property: part of
  some values from: virion assembly
definition: The encapsulation of the viral genome within the capsid.
has_obo_namespace: biological_process
id: GO:0019072
in_subset: goslim virus

Axiom
annotated source: viral genome packaging
annotated property: definition
annotated target: The encapsulation of the viral genome within the capsid.
database_cross_reference: ISBN:0121585336

viral gene expression
type: Class
subclass of: viral process
definition: A process by which a viral gene is converted into a mature gene product or products (proteins or RNA). This includes viral transcription, processing to produce a mature RNA product, and viral translation.
has_exact_synonym: viral genome expression
has_obo_namespace: biological_process
id: GO:0019080
in_subset: goslim virus

Axiom
annotated source: viral gene expression
annotated property: definition
annotated target: A process by which a viral gene is converted into a mature gene product or products (proteins or RNA). This includes viral transcription, processing to produce a mature RNA product, and viral translation.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0121585336

Axiom
annotated source: viral gene expression
annotated property: has_exact_synonym
annotated target: viral genome expression
database_cross_reference: GOC:jl

viral transcription
type: Class
subclass of: viral process
subclass of: Restriction
  on property: part of
  some values from: viral gene expression
definition: The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
has_obo_namespace: biological_process
id: GO:0019083
in_subset: goslim virus

Axiom
annotated source: viral transcription
annotated property: definition
annotated target: The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0781702534

host cell plasma membrane
type: Class
definition: The plasma membrane surrounding a host cell.
has_obo_namespace: cellular_component
id: GO:0020002
in_subset: goslim virus

Axiom
annotated source: host cell plasma membrane
annotated property: definition
annotated target: The plasma membrane surrounding a host cell.
database_cross_reference: GOC:mb

symbiont-containing vacuole
type: Class
definition: Membrane-bounded vacuole within a host cell in which a symbiont organism resides. The vacuole membrane is derived from both the host and symbiont.
has_exact_synonym: SCV
has_exact_synonym: parasitophorous vacuole
has_narrow_synonym: Salmonella-containing vacuole
has_narrow_synonym: bacterium-containing vacuole
has_narrow_synonym: pathogen-occupied vacuole
has_obo_namespace: cellular_component
id: GO:0020003
in_subset: goslim virus
comment: Note that this term does not have a relationship to 'vacuole ; GO:0005773' because it does not fit the definition of a vacuole; the parasitophorous vacuole was so named because it resembles a vacuole in the microscope.

Axiom
annotated source: symbiont-containing vacuole
annotated property: definition
annotated target: Membrane-bounded vacuole within a host cell in which a symbiont organism resides. The vacuole membrane is derived from both the host and symbiont.
database_cross_reference: GOC:jl
database_cross_reference: GOC:mb

Axiom
annotated source: symbiont-containing vacuole
annotated property: has_exact_synonym
annotated target: SCV
database_cross_reference: PMID:10449405
database_cross_reference: PMID:15121880

Axiom
annotated source: symbiont-containing vacuole
annotated property: has_narrow_synonym
annotated target: Salmonella-containing vacuole
database_cross_reference: PMID:10449405
database_cross_reference: PMID:15121880

Axiom
annotated source: symbiont-containing vacuole
annotated property: has_narrow_synonym
annotated target: bacterium-containing vacuole
database_cross_reference: PMID:22042847

Axiom
annotated source: symbiont-containing vacuole
annotated property: has_narrow_synonym
annotated target: pathogen-occupied vacuole
database_cross_reference: PMID:24034612

exit from host cell
type: Class
definition: The movement of an organism out of a cell of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
term tracker item: https://github.com/geneontology/go-ontology/issues/23085
created by: bf
creation date: 2011-06-15T02:08:03Z
has_alternative_id: GO:0035890
has_exact_synonym: host cell exit
has_obo_namespace: biological_process
has_related_synonym: ejection from host
has_related_synonym: ejection from host cell
has_related_synonym: exit from host
id: GO:0035891
in_subset: goslim virus

Axiom
annotated source: exit from host cell
annotated property: definition
annotated target: The movement of an organism out of a cell of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: GOC:bf
database_cross_reference: GOC:rs
database_cross_reference: PMID:19325115

Axiom
annotated source: exit from host cell
annotated property: has_exact_synonym
annotated target: host cell exit
database_cross_reference: PMID:19325115

Axiom
annotated source: exit from host cell
annotated property: has_related_synonym
annotated target: ejection from host
database_cross_reference: GOC:bf

Axiom
annotated source: exit from host cell
annotated property: has_related_synonym
annotated target: ejection from host cell
database_cross_reference: PMID:19325115

viral DNA genome replication
type: Class
subclass of: viral process
subclass of: Restriction
  on property: part of
  some values from: viral life cycle
definition: The replication of a viral DNA genome.
created by: bf
creation date: 2013-10-23T15:22:31Z
has_alternative_id: GO:0039681
has_exact_synonym: DNA-dependent viral DNA replication
has_exact_synonym: viral DNA replication
has_exact_synonym: viral DNA-dependent DNA replication
has_obo_namespace: biological_process
id: GO:0039693
in_subset: goslim virus

Axiom
annotated source: viral DNA genome replication
annotated property: definition
annotated target: The replication of a viral DNA genome.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl
database_cross_reference: VZ:915

Axiom
annotated source: viral DNA genome replication
annotated property: has_exact_synonym
annotated target: DNA-dependent viral DNA replication
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: viral DNA genome replication
annotated property: has_exact_synonym
annotated target: viral DNA replication
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

host cell nucleus
type: Class
definition: A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
has_alternative_id: GO:0033649
has_obo_namespace: cellular_component
id: GO:0042025
in_subset: goslim virus

Axiom
annotated source: host cell nucleus
annotated property: definition
annotated target: A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: GOC:pamgo_curators

modulation by symbiont of host process
type: Class
definition: The process in which a symbiont organism effects a change in the structure or processes of its host organism.
term tracker item: https://github.com/geneontology/go-ontology/issues/18719
term tracker item: https://github.com/geneontology/go-ontology/issues/23089
RO_0002161: NCBITaxon_33090
RO_0002161: NCBITaxon 7742
has_alternative_id: GO:0044004
has_alternative_id: GO:0044055
has_alternative_id: GO:0052065
has_alternative_id: GO:0052251
has_alternative_id: GO:0052265
has_alternative_id: GO:0052389
has_alternative_id: GO:0052509
has_alternative_id: GO:0052510
has_narrow_synonym: modulation by symbiont of host system process
has_narrow_synonym: regulation by symbiont of host system process
has_obo_namespace: biological_process
has_related_synonym: disruption by symbiont of host cell
has_related_synonym: modification by symbiont of host biological process
has_related_synonym: modification by symbiont of host morphology or physiology
has_related_synonym: pathogenesis
id: GO:0044003
in_subset: goslim virus

Axiom
annotated source: modulation by symbiont of host process
annotated property: definition
annotated target: The process in which a symbiont organism effects a change in the structure or processes of its host organism.
database_cross_reference: GOC:cc

host cell cytoplasmic vesicle
type: Class
definition: A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
created by: jl
creation date: 2009-08-11T04:22:21Z
has_obo_namespace: cellular_component
id: GO:0044161
in_subset: goslim virus

Axiom
annotated source: host cell cytoplasmic vesicle
annotated property: definition
annotated target: A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
database_cross_reference: GOC:rph

host cell endoplasmic reticulum
type: Class
definition: The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
created by: jl
creation date: 2009-09-04T11:08:09Z
has_exact_synonym: host endoplasmic reticulum
has_obo_namespace: cellular_component
id: GO:0044165
in_subset: goslim virus

Axiom
annotated source: host cell endoplasmic reticulum
annotated property: definition
annotated target: The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
database_cross_reference: GOC:jl

host cell Golgi apparatus
type: Class
definition: A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
created by: jl
creation date: 2009-09-04T03:14:38Z
has_exact_synonym: host Golgi apparatus
has_obo_namespace: cellular_component
id: GO:0044177
in_subset: goslim virus

Axiom
annotated source: host cell Golgi apparatus
annotated property: definition
annotated target: A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
database_cross_reference: GOC:jl

symbiont entry into host
type: Class
definition: Entry of a symbiont into the body, tissues, or cells of a host organism as part of the symbiont life cycle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
term tracker item: https://github.com/geneontology/go-ontology/issues/18563
has_alternative_id: GO:0030260
has_alternative_id: GO:0044411
has_alternative_id: GO:0051806
has_alternative_id: GO:0051828
has_alternative_id: GO:0051830
has_alternative_id: GO:0075052
has_alternative_id: GO:0085027
has_alternative_id: GO:0085028
has_exact_synonym: entry into host
has_exact_synonym: host invasion
has_exact_synonym: host penetration
has_exact_synonym: invasion into host
has_exact_synonym: invasion of host
has_exact_synonym: penetration into host
has_narrow_synonym: entry into cell of other organism during symbiotic interaction
has_narrow_synonym: entry into host cell via penetration peg
has_narrow_synonym: entry into host via a specialized structure during symbiotic interaction
has_narrow_synonym: entry into host via enzymatic degradation of host anatomical structure
has_narrow_synonym: entry into host via enzymatic degradation of host cuticle
has_narrow_synonym: penetration into host via a specialized structure
has_narrow_synonym: penetration into host via a specialized structure during symbiotic interaction
has_obo_namespace: biological_process
has_related_synonym: entry into cell of other organism involved in symbiotic interaction
has_related_synonym: entry into host through host barriers
has_related_synonym: entry into other organism during symbiotic interaction
has_related_synonym: entry into other organism involved in symbiotic interaction
has_related_synonym: invasion into other organism
has_related_synonym: invasion of other organism
has_related_synonym: invasive growth
has_related_synonym: other organism invasion
id: GO:0044409
in_subset: goslim virus

Axiom
annotated source: symbiont entry into host
annotated property: definition
annotated target: Entry of a symbiont into the body, tissues, or cells of a host organism as part of the symbiont life cycle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: GOC:vw

Axiom
annotated source: symbiont entry into host
annotated property: has_exact_synonym
annotated target: host penetration
database_cross_reference: GOC:vw

Axiom
annotated source: symbiont entry into host
annotated property: has_exact_synonym
annotated target: penetration into host
database_cross_reference: GOC:vw

Axiom
annotated source: symbiont entry into host
annotated property: has_narrow_synonym
annotated target: entry into cell of other organism during symbiotic interaction
database_cross_reference: GOC:tb

Axiom
annotated source: symbiont entry into host
annotated property: has_narrow_synonym
annotated target: penetration into host via a specialized structure
database_cross_reference: GOC:vw

Axiom
annotated source: symbiont entry into host
annotated property: has_narrow_synonym
annotated target: penetration into host via a specialized structure during symbiotic interaction
database_cross_reference: GOC:vw

Axiom
annotated source: symbiont entry into host
annotated property: has_related_synonym
annotated target: entry into other organism during symbiotic interaction
database_cross_reference: GOC:tb

symbiont-mediated disruption of host cellular anatomical entity
type: Class
definition: The process in which an organism effects a change that impairs the structure or function of a host cellular anatomical entity. The host is defined as the larger of the organisms involved in a symbiotic interaction.
term tracker item: https://github.com/geneontology/go-ontology/issues/24127
has_broad_synonym: symbiont-mediated disruption of host cellular component
has_exact_synonym: catabolism of host cellular component by organism
has_exact_synonym: catabolism of host structural constituent by organism
has_exact_synonym: degradation of host cellular component by organism
has_exact_synonym: disassembly by organism of host cellular component
has_exact_synonym: disruption by symbiont of host cellular component
has_obo_namespace: biological_process
has_related_synonym: cytopathogenic effect
has_related_synonym: disassembly by symbiont of host cellular component
id: GO:0052008
in_subset: goslim virus

Axiom
annotated source: symbiont-mediated disruption of host cellular anatomical entity
annotated property: definition
annotated target: The process in which an organism effects a change that impairs the structure or function of a host cellular anatomical entity. The host is defined as the larger of the organisms involved in a symbiotic interaction.
database_cross_reference: ISBN:0198547684

perturbation by virus of host immune response
type: Class
subclass of: virus-mediated perturbation of host defense response
definition: A process in which a virus effects a change in the host immune response.
term tracker item: https://github.com/geneontology/go-ontology/issues/25569
created by: jl
creation date: 2011-08-04T02:47:57Z
has_exact_synonym: regulation by virus of host immune system process
has_obo_namespace: biological_process
id: GO:0075528
in_subset: goslim virus

Axiom
annotated source: perturbation by virus of host immune response
annotated property: definition
annotated target: A process in which a virus effects a change in the host immune response.
database_cross_reference: GOC:bf
database_cross_reference: GOC:jl

Axiom
annotated source: perturbation by virus of host immune response
annotated property: has_exact_synonym
annotated target: regulation by virus of host immune system process
database_cross_reference: GOC:jl

preceded by
database_cross_reference: BFO:0000062
has_obo_namespace: external
id: preceded_by
shorthand: preceded_by

precedes
database_cross_reference: BFO:0000063
has_obo_namespace: external
id: precedes
shorthand: precedes

results in
created by: cjm
creation date: 2012-03-14T10:35:44Z
database_cross_reference: GOREL:0000040
has_obo_namespace: external
id: results_in
shorthand: results_in
comment: This relation is currently used to connect two regulation processes p1 and p2, such that if r1 regulates p1 and r2 regulates p2, and r1 results_in r2 then the regulation of p1 is required for the regulation of p2. For an example of use, see GO:0035958 'regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter'. Note that a precise definition of this relation is under discussion. After it has been formalized it will be added to RO, where it will have a RO ID. Note that the existing identifier and label are subject to change.

results in division of
database_cross_reference: GOREL:0001019
has_obo_namespace: external
id: results_in_division_of
shorthand: results_in_division_of
comment: use occurs_in

results in distribution of
database_cross_reference: GOREL:0002003
has_obo_namespace: external
id: results_in_distribution_of
shorthand: results_in_distribution_of

results in fission of
database_cross_reference: GOREL:0002004
has_obo_namespace: external
id: results_in_fission_of
shorthand: results_in_fission_of

results in maintenance of
database_cross_reference: GOREL:0012006
has_obo_namespace: external
id: results_in_maintenance_of
shorthand: results_in_maintenance_of

bearer of
database_cross_reference: RO:0000053
has_obo_namespace: external
id: bearer_of
shorthand: bearer_of

participates in
database_cross_reference: RO:0000056
has_obo_namespace: external
id: participates_in
shorthand: participates_in

has participant
database_cross_reference: RO:0000057
has_obo_namespace: external
id: has_participant
shorthand: has_participant

bounding layer of
database_cross_reference: RO:0002007
has_obo_namespace: external
id: bounding_layer_of
shorthand: bounding_layer_of

coincident with
database_cross_reference: RO:0002008
has_obo_namespace: external
id: coincident_with
shorthand: coincident_with

regulates in other organism
database_cross_reference: RO:0002010
has_obo_namespace: external
id: regulates_in_other_organism
shorthand: regulates_in_other_organism

has regulatory component activity
database_cross_reference: RO:0002013
has_obo_namespace: external
id: has_regulatory_component_activity
shorthand: has_regulatory_component_activity

has negative regulatory component activity
database_cross_reference: RO:0002014
has_obo_namespace: external
id: has_negative_regulatory_component_activity
shorthand: has_negative_regulatory_component_activity

has necessary component activity
database_cross_reference: RO:0002016
has_obo_namespace: external
id: has_necessary_component_activity
shorthand: has_necessary_component_activity

immediately preceded by
database_cross_reference: RO:0002087
has_obo_namespace: external
id: immediately_preceded_by
shorthand: immediately_preceded_by

immediately precedes
database_cross_reference: RO:0002090
has_obo_namespace: external
id: immediately_precedes
shorthand: immediately_precedes

overlaps
database_cross_reference: RO:0002131
has_obo_namespace: external
id: overlaps
shorthand: overlaps

has component
database_cross_reference: RO:0002180
has_obo_namespace: external
id: has_component
shorthand: has_component

capable of
database_cross_reference: RO:0002215
has_obo_namespace: external
id: capable_of
shorthand: capable_of

capable of part of
database_cross_reference: RO:0002216
has_obo_namespace: external
id: capable_of_part_of
shorthand: capable_of_part_of

adjacent to
database_cross_reference: RO:0002220
has_obo_namespace: external
id: adjacent_to
shorthand: adjacent_to

starts with
database_cross_reference: RO:0002224
has_obo_namespace: external
id: starts_with
shorthand: starts_with

ends with
database_cross_reference: RO:0002230
has_obo_namespace: external
id: ends_with
shorthand: ends_with

has start location
database_cross_reference: RO:0002231
has_obo_namespace: external
id: has_start_location
shorthand: has_start_location

has end location
database_cross_reference: RO:0002232
has_obo_namespace: external
id: has_end_location
shorthand: has_end_location

has input
database_cross_reference: RO:0002233
has_obo_namespace: external
id: has_input
shorthand: has_input

has output
database_cross_reference: RO:0002234
has_obo_namespace: external
id: has_output
shorthand: has_output

results in developmental progression of
database_cross_reference: RO:0002295
has_obo_namespace: external
id: results_in_developmental_progression_of
shorthand: results_in_developmental_progression_of

results in development of
database_cross_reference: RO:0002296
has_obo_namespace: external
id: results_in_development_of
shorthand: results_in_development_of

results in formation of
database_cross_reference: RO:0002297
has_obo_namespace: external
id: results_in_formation_of
shorthand: results_in_formation_of

results in morphogenesis of
database_cross_reference: RO:0002298
has_obo_namespace: external
id: results_in_morphogenesis_of
shorthand: results_in_morphogenesis_of

results in maturation of
database_cross_reference: RO:0002299
has_obo_namespace: external
id: results_in_maturation_of
shorthand: results_in_maturation_of

causally upstream of, positive effect
database_cross_reference: RO:0002304
has_obo_namespace: external
id: causally_upstream_of,_positive_effect
shorthand: causally_upstream_of,_positive_effect

causally upstream of, negative effect
database_cross_reference: RO:0002305
has_obo_namespace: external
id: causally_upstream_of,_negative_effect
shorthand: causally_upstream_of,_negative_effect

results in acquisition of features of
database_cross_reference: RO:0002315
has_obo_namespace: external
id: results_in_acquisition_of_features_of
shorthand: results_in_acquisition_of_features_of

regulates levels of
database_cross_reference: RO:0002332
has_obo_namespace: external
id: regulates_levels_of
shorthand: regulates_levels_of

regulated by
database_cross_reference: RO:0002334
has_obo_namespace: external
id: regulated_by
shorthand: regulated_by

negatively regulated by
database_cross_reference: RO:0002335
has_obo_namespace: external
id: negatively_regulated_by
shorthand: negatively_regulated_by

positively regulated by
database_cross_reference: RO:0002336
has_obo_namespace: external
id: positively_regulated_by
shorthand: positively_regulated_by

has target start location
database_cross_reference: RO:0002338
has_obo_namespace: external
id: has_target_start_location
shorthand: has_target_start_location

has target end location
database_cross_reference: RO:0002339
has_obo_namespace: external
id: has_target_end_location
shorthand: has_target_end_location

results in transport along
database_cross_reference: RO:0002341
has_obo_namespace: external
id: results_in_transport_along
shorthand: results_in_transport_along

results in transport across
database_cross_reference: RO:0002342
has_obo_namespace: external
id: results_in_transport_across
shorthand: results_in_transport_across

results in growth of
database_cross_reference: RO:0002343
has_obo_namespace: external
id: results_in_growth_of
shorthand: results_in_growth_of

results in transport to from or in
database_cross_reference: RO:0002344
has_obo_namespace: external
id: results_in_transport_to_from_or_in
shorthand: results_in_transport_to_from_or_in

results in commitment to
database_cross_reference: RO:0002348
has_obo_namespace: external
id: results_in_commitment_to
shorthand: results_in_commitment_to

results in determination of
database_cross_reference: RO:0002349
has_obo_namespace: external
id: results_in_determination_of
shorthand: results_in_determination_of

output of
database_cross_reference: RO:0002353
has_obo_namespace: external
id: output_of
shorthand: output_of

results in structural organization of
database_cross_reference: RO:0002355
has_obo_namespace: external
id: results_in_structural_organization_of
shorthand: results_in_structural_organization_of

results in specification of
database_cross_reference: RO:0002356
has_obo_namespace: external
id: results_in_specification_of
shorthand: results_in_specification_of

causally downstream of
database_cross_reference: RO:0002404
has_obo_namespace: external
id: causally_downstream_of
shorthand: causally_downstream_of

immediately causally downstream of
database_cross_reference: RO:0002405
has_obo_namespace: external
id: immediately_causally_downstream_of
shorthand: immediately_causally_downstream_of

causally upstream of
database_cross_reference: RO:0002411
has_obo_namespace: external
id: causally_upstream_of
shorthand: causally_upstream_of

immediately causally upstream of
database_cross_reference: RO:0002412
has_obo_namespace: external
id: immediately_causally_upstream_of
shorthand: immediately_causally_upstream_of

causally upstream of or within
database_cross_reference: RO:0002418
has_obo_namespace: external
id: causally_upstream_of_or_within
shorthand: causally_upstream_of_or_within

causally downstream of or within
database_cross_reference: RO:0002427
has_obo_namespace: external
id: causally_downstream_of_or_within
shorthand: causally_downstream_of_or_within

has intermediate
database_cross_reference: RO:0002505
has_obo_namespace: external
id: has_intermediate
shorthand: has_intermediate

results in movement of
database_cross_reference: RO:0002565
has_obo_namespace: external
id: results_in_movement_of
shorthand: results_in_movement_of

directly regulates
database_cross_reference: RO:0002578
has_obo_namespace: external
id: directly_regulates
shorthand: directly_regulates

results in assembly of
database_cross_reference: RO:0002588
has_obo_namespace: external
id: results_in_assembly_of
shorthand: results_in_assembly_of

results in disassembly of
database_cross_reference: RO:0002590
has_obo_namespace: external
id: results_in_disassembly_of
shorthand: results_in_disassembly_of

results in remodeling of
database_cross_reference: RO:0002591
has_obo_namespace: external
id: results_in_remodeling_of
shorthand: results_in_remodeling_of

results in organization of
database_cross_reference: RO:0002592
has_obo_namespace: external
id: results_in_organization_of
shorthand: results_in_organization_of

process has causal agent
database_cross_reference: RO:0002608
has_obo_namespace: external
id: process_has_causal_agent
shorthand: process_has_causal_agent

directly positively regulates
database_cross_reference: RO:0002629
has_obo_namespace: external
id: directly_positively_regulates
shorthand: directly_positively_regulates

directly negatively regulates
database_cross_reference: RO:0002630
has_obo_namespace: external
id: directly_negatively_regulates
shorthand: directly_negatively_regulates

produces
database_cross_reference: RO:0003000
has_obo_namespace: external
id: produces
shorthand: produces

produced by
database_cross_reference: RO:0003001
has_obo_namespace: external
id: produced_by
shorthand: produced_by

has primary input or output
database_cross_reference: RO:0004007
has_obo_namespace: external
id: has_primary_input_or_output
shorthand: has_primary_input_or_output

has primary output
database_cross_reference: RO:0004008
has_obo_namespace: external
id: has_primary_output
shorthand: has_primary_output

has primary input
database_cross_reference: RO:0004009
has_obo_namespace: external
id: has_primary_input
shorthand: has_primary_input

has small molecule activator
database_cross_reference: RO:0012001
has_obo_namespace: external
id: has_small_molecule_activator
shorthand: has_small_molecule_activator

acts on population of
database_cross_reference: RO:0012003
has_obo_namespace: external
id: acts_on_population_of
shorthand: acts_on_population_of

results in fusion of
database_cross_reference: RO:0012008
has_obo_namespace: external
id: results_in_fusion_of
shorthand: results_in_fusion_of

regulates characteristic
database_cross_reference: RO:0019000
has_obo_namespace: gene_ontology
id: regulates_characteristic
shorthand: regulates_characteristic

positively regulates characteristic
database_cross_reference: RO:0019001
has_obo_namespace: gene_ontology
id: positively_regulates_characteristic
shorthand: positively_regulates_characteristic

negatively regulates characteristic
database_cross_reference: RO:0019002
has_obo_namespace: gene_ontology
id: negatively_regulates_characteristic
shorthand: negatively_regulates_characteristic

results in changes to anatomical or cellular structure
database_cross_reference: RO:0040036
has_obo_namespace: external
id: results_in_changes_to_anatomical_or_cellular_structure
shorthand: results_in_changes_to_anatomical_or_cellular_structure