# Group: paint - Dataset: paint_tair

## SUMMARY

This report generated on 2024-12-19

  * Associations: 37138
  * Lines in file (incl headers): 37191
  * Lines skipped: 47
## Header From Original Association File

> !gaf-version: 2.2  
> !Created on Thu Nov 21 14:20:17 2024.  
> !generated-by: PANTHER  
> !date-generated: 2024-11-21  
> !PANTHER version: v.19.0.  
> !GO version: 2024-11-03.  

## Contents

[gorule-0000002](#gorule-0000002)

[gorule-0000005](#gorule-0000005)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000020](#gorule-0000020)

[gorule-0000022](#gorule-0000022)

[gorule-0000028](#gorule-0000028)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[gorule-0000063](#gorule-0000063)

[gorule-0000064](#gorule-0000064)

[gorule-0000065](#gorule-0000065)

[other](#other)


## MESSAGES

### gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

* total: 0
### gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

* total: 0
### gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

* total: 0
### gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

* total: 0
### gorule-0000008

No annotations should be made to uninformative high level terms

* total: 0
### gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

* total: 0
### gorule-0000013

Taxon-appropriate annotation check

* total: 23
#### Messages
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2133124	At4g20920	involved_in	GO:0034587	GO_REF:0000033	IBA	PANTHER:PTN000483941|FB:FBgn0033686|WB:WBGene00015349|MGI:MGI:1913965|ZFIN:ZDB-GENE-050417-387	P	Small RNA 2'-O-methyltransferase	UniProtKB:A0A1P8B4L0|PTN002725185	protein	taxon:3702	20231109	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2166469	TUBG2	is_active_in	GO:0005813	GO_REF:0000033	IBA	PANTHER:PTN000172659|FB:FBgn0010097|MGI:MGI:101834|FB:FBgn0260639|dictyBase:DDB_G0271738|WB:WBGene00006540|UniProtKB:P23258|UniProtKB:A0A644F0Y1|UniProtKB:P54401|MGI:MGI:2144208	C	Tubulin gamma-2 chain	UniProtKB:P38558|PTN000172730	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2175088	ALEU	enables	GO:0008656	GO_REF:0000033	IBA	PANTHER:PTN001391516|MGI:MGI:107285|UniProtKB:P09668	F	Thiol protease aleurain	UniProtKB:Q8H166|PTN000275621	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	F4I443	BARD1	part_of	GO:0031436	GO_REF:0000033	IBA	PANTHER:PTN000349139|UniProtKB:P38398	C	BRCA1-associated RING domain protein 1	UniProtKB:F4I443|PTN000612855	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2133114	HEN1	involved_in	GO:0034587	GO_REF:0000033	IBA	PANTHER:PTN000483941|FB:FBgn0033686|WB:WBGene00015349|MGI:MGI:1913965|ZFIN:ZDB-GENE-050417-387	P	Small RNA 2'-O-methyltransferase	UniProtKB:Q9C5Q8|PTN001468451	protein	taxon:3702	20231109	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2160309	MBK20.2	involved_in	GO:1990810	GO_REF:0000033	IBA	PANTHER:PTN000416664|PomBase:SPBC32H8.09	P	At5g07590	UniProtKB:Q5PP39|PTN000416705	protein	taxon:3702	20200319	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2078312	At3g45310	enables	GO:0008656	GO_REF:0000033	IBA	PANTHER:PTN001391516|MGI:MGI:107285|UniProtKB:P09668	F	Thiol protease aleurain-like	UniProtKB:Q8RWQ9|PTN000275622	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2133109	BRCA1	part_of	GO:0070531	GO_REF:0000033	IBA	PANTHER:PTN000349139|UniProtKB:P38398	C	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog	UniProtKB:Q8RXD4|PTN001417510	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2168758	DHAPRD	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|MGI:MGI:95679|UniProtKB:C8VTT9|SGD:S000005420|SGD:S000002180	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1, chloroplastic	UniProtKB:Q9SCX9|PTN001366291	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2076750	TUBG1	is_active_in	GO:0005813	GO_REF:0000033	IBA	PANTHER:PTN000172659|FB:FBgn0010097|MGI:MGI:101834|FB:FBgn0260639|dictyBase:DDB_G0271738|WB:WBGene00006540|UniProtKB:P23258|UniProtKB:A0A644F0Y1|UniProtKB:P54401|MGI:MGI:2144208	C	Tubulin gamma-1 chain	UniProtKB:P38557|PTN000172731	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2077387	At3g07690	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|MGI:MGI:95679|UniProtKB:C8VTT9|SGD:S000005420|SGD:S000002180	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] At3g07690, cytosolic	UniProtKB:Q9S785|PTN000198132	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2083318	BRCC36B	part_of	GO:0070531	GO_REF:0000033	IBA	PANTHER:PTN000045567|UniProtKB:P46736	C	Mov34_MPN_PAD-1 family protein	UniProtKB:F4JC55|PTN000045609	protein	taxon:3702	20180309	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2016279	BRCC36A	part_of	GO:0070531	GO_REF:0000033	IBA	PANTHER:PTN000045567|UniProtKB:P46736	C	At1g80210_F18B13_28	UniProtKB:Q8RW94|PTN000045610	protein	taxon:3702	20180309	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2081551	At3g11870	involved_in	GO:0070059	GO_REF:0000033	IBA	PANTHER:PTN000359335|MGI:MGI:1930134|MGI:MGI:1349436	P	Inactive serine_threonine-protein kinase_endoribonuclease IRE1-like	UniProtKB:Q9SF12|PTN000359427	protein	taxon:3702	20181005	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2053928	IRE1A	involved_in	GO:0070059	GO_REF:0000033	IBA	PANTHER:PTN000359335|MGI:MGI:1930134|MGI:MGI:1349436	P	Serine_threonine-protein kinase_endoribonuclease IRE1a	UniProtKB:Q9C5S2|PTN000359426	protein	taxon:3702	20181005	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2027417	At1g11800	is_active_in	GO:0016605	GO_REF:0000033	IBA	PANTHER:PTN001039821|UniProtKB:O95551	C	At1g11800_F25C20_3	UniProtKB:Q9SA95|PTN000406171	protein	taxon:3702	20170427	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2062734	GPDHC1	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|MGI:MGI:95679|UniProtKB:C8VTT9|SGD:S000005420|SGD:S000002180	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic	UniProtKB:O22216|PTN000198133	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	F4I443	BARD1	part_of	GO:0070531	GO_REF:0000033	IBA	PANTHER:PTN000349139|UniProtKB:P38398	C	BRCA1-associated RING domain protein 1	UniProtKB:F4I443|PTN000612855	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2162331	MDH9.17	part_of	GO:0070531	GO_REF:0000033	IBA	PANTHER:PTN000390309|UniProtKB:Q9NXR7	C	BRISC and BRCA1-A complex member 2	UniProtKB:Q5XF81|PTN000390341	protein	taxon:3702	20210422	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2064849	GLY1	enables	GO:0047952	GO_REF:0000033	IBA	PANTHER:PTN000919759|MGI:MGI:95679|UniProtKB:C8VTT9|SGD:S000005420|SGD:S000002180	F	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic	UniProtKB:Q949Q0|PTN000198123	protein	taxon:3702	20241120	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2047047	FIO1	enables	GO:0052907	GO_REF:0000033	IBA	PANTHER:PTN000333539|UniProtKB:P75782	F	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase	UniProtKB:F4IGH3|PTN001001995	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2152886	IRE1B	involved_in	GO:0070059	GO_REF:0000033	IBA	PANTHER:PTN000359335|MGI:MGI:1930134|MGI:MGI:1349436	P	Serine_threonine-protein kinase_endoribonuclease IRE1b	UniProtKB:Q93VJ2|PTN000359428	protein	taxon:3702	20181005	GO_Central		
`
* ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `TAIR	locus:2133109	BRCA1	part_of	GO:0031436	GO_REF:0000033	IBA	PANTHER:PTN000349139|UniProtKB:P38398	C	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog	UniProtKB:Q8RXD4|PTN001417510	protein	taxon:3702	20170228	GO_Central		
`
### gorule-0000015

Dual species taxon check

* total: 0
### gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 0
### gorule-0000017

IDA annotations must not have a With/From entry

* total: 0
### gorule-0000018

IPI annotations require a With/From entry

* total: 0
### gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 55
#### Messages
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006266) -- `TAIR	locus:2010207	At1g49250	involved_in	GO:0006266	GO_REF:0000033	IBA	PANTHER:PTN000048696|RGD:1309875|SGD:S000002323|UniProtKB:P49916	P	DNA ligase	UniProtKB:F4I1P7|PTN000048862	protein	taxon:3702	20241121	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006266) -- `TAIR	locus:2033374	LIG6	involved_in	GO:0006266	GO_REF:0000033	IBA	PANTHER:PTN000048696|RGD:1309875|SGD:S000002323|UniProtKB:P49916	P	DNA ligase 6	UniProtKB:F4HPZ9|PTN000048762	protein	taxon:3702	20241121	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006266) -- `TAIR	locus:2199953	LIG1	involved_in	GO:0006266	GO_REF:0000033	IBA	PANTHER:PTN000048696|RGD:1309875|SGD:S000002323|UniProtKB:P49916	P	DNA ligase 1	UniProtKB:Q42572|PTN000048863	protein	taxon:3702	20241121	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2137375	MEB1	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Membrane protein of ER body 1	UniProtKB:Q8W4P8|PTN002069178	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2090305	VTL5	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter homolog 2.1	UniProtKB:Q9LSF6|PTN000781511	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2080213	At3g43660	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter homolog 4	UniProtKB:Q9M2C0|PTN001590102	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2169804	MEB2	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Membrane protein of ER body 2	UniProtKB:F4KFS7|PTN002069179	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2080193	At3g43630	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter homolog 3	UniProtKB:Q9M2C3|PTN000781510	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2199572	VTL1	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter homolog 1	UniProtKB:Q9LPU9|PTN000781514	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2065383	VIT1	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter 1	UniProtKB:Q9ZUA5|PTN000783880	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2137390	MEBL	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Membrane protein of ER body-like protein	UniProtKB:Q8LPT3|PTN002069180	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2137370	At4g27850	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Glycine-rich protein family	UniProtKB:Q9STP1|PTN002422534	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006880) -- `TAIR	locus:2030091	VTL2	involved_in	GO:0006880	GO_REF:0000033	IBA	PANTHER:PTN001275041|TAIR:locus:2090305|UniProtKB:Q6MWE5|UniProtKB:Q6ERE5|TAIR:locus:2199572|TAIR:locus:2030091	P	Vacuolar iron transporter homolog 2	UniProtKB:Q9SRD3|PTN000781512	protein	taxon:3702	20230407	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0032508) -- `TAIR	locus:2045437	RAD50	involved_in	GO:0032508	GO_REF:0000033	IBA	PANTHER:PTN000429848|UniProtKB:Q92878	P	DNA repair protein RAD50	UniProtKB:Q9SL02|PTN000429919	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0032508) -- `TAIR	locus:2076934	NBS1	involved_in	GO:0032508	GO_REF:0000033	IBA	PANTHER:PTN000255549|UniProtKB:O60934	P	Nibrin homolog	UniProtKB:Q0H8D7|PTN000255597	protein	taxon:3702	20170228	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0032508) -- `TAIR	locus:2017894	At1g79890	involved_in	GO:0032508	GO_REF:0000033	IBA	PANTHER:PTN000158371|UniProtKB:Q96FC9	P	DNA helicase	UniProtKB:Q9CA92|PTN000158437	protein	taxon:3702	20200929	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0032508) -- `TAIR	locus:2016209	RTEL1	involved_in	GO:0032508	GO_REF:0000033	IBA	PANTHER:PTN000158195|MGI:MGI:2139369	P	Regulator of telomere elongation helicase 1 homolog	UniProtKB:F4HQE2|PTN000158238	protein	taxon:3702	20200929	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042989) -- `TAIR	locus:2051965	PRF1	involved_in	GO:0042989	GO_REF:0000033	IBA	PANTHER:PTN000176159|SGD:S000005648|UniProtKB:P35081|UniProtKB:O22655|UniProtKB:Q8I2J4|UniProtKB:Q9FR39	P	Profilin-1	UniProtKB:Q42449|PTN001359282	protein	taxon:3702	20230110	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042989) -- `TAIR	locus:2118324	PRF2	involved_in	GO:0042989	GO_REF:0000033	IBA	PANTHER:PTN000176159|SGD:S000005648|UniProtKB:P35081|UniProtKB:O22655|UniProtKB:Q8I2J4|UniProtKB:Q9FR39	P	Profilin-2	UniProtKB:Q42418|PTN000176225	protein	taxon:3702	20230110	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042989) -- `UniProtKB	Q9FE63	PRF3	involved_in	GO:0042989	GO_REF:0000033	IBA	PANTHER:PTN000176159|SGD:S000005648|UniProtKB:P35081|UniProtKB:O22655|UniProtKB:Q8I2J4|UniProtKB:Q9FR39	P	Profilin-3	UniProtKB:Q9FE63|PTN002613832	protein	taxon:3702	20230110	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042989) -- `TAIR	locus:2051945	PRF5	involved_in	GO:0042989	GO_REF:0000033	IBA	PANTHER:PTN000176159|SGD:S000005648|UniProtKB:P35081|UniProtKB:O22655|UniProtKB:Q8I2J4|UniProtKB:Q9FR39	P	Profilin-5	UniProtKB:Q38905|PTN001359281	protein	taxon:3702	20230110	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0042989) -- `TAIR	locus:2118309	PRF4	involved_in	GO:0042989	GO_REF:0000033	IBA	PANTHER:PTN000176159|SGD:S000005648|UniProtKB:P35081|UniProtKB:O22655|UniProtKB:Q8I2J4|UniProtKB:Q9FR39	P	Profilin-4	UniProtKB:Q38904|PTN000176228	protein	taxon:3702	20230110	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0051103) -- `TAIR	locus:2094593	XRCC4	involved_in	GO:0051103	GO_REF:0000033	IBA	PANTHER:PTN002004633|UniProtKB:Q13426	P	DNA repair protein XRCC4	UniProtKB:Q682V0|PTN002004693	protein	taxon:3702	20190520	GO_Central		
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0051103) -- `TAIR	locus:2197679	At1g61410	involved_in	GO:0051103	GO_REF:0000033	IBA	PANTHER:PTN002004633|UniProtKB:Q13426	P	At1g61410	UniProtKB:Q058G5|PTN002004692	protein	taxon:3702	20190520	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2119767	OSB2	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Protein OSB2, chloroplastic	UniProtKB:Q8GXH3|PTN001617810	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2028240	MCM2	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000179907|UniProtKB:Q2R482|MGI:MGI:105380|UniProtKB:P49736	P	DNA replication licensing factor MCM2	UniProtKB:Q9LPD9|PTN000179967	protein	taxon:3702	20211215	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2074429	RECQL1	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 1	UniProtKB:Q9FT74|PTN001009456	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:504954997	MCM6	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000180096|MGI:MGI:1298227|UniProtKB:Q14566|SGD:S000003169	P	DNA replication licensing factor MCM6	UniProtKB:F4KAB8|PTN000180160	protein	taxon:3702	20211215	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2054577	RPA1A	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Replication protein A 70 kDa DNA-binding subunit A	UniProtKB:Q9SKI4|PTN000588703	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2127998	RECQL3	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 3	UniProtKB:Q9FT72|PTN000345086	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:505006672	OSB3	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Protein OSB3, chloroplastic_mitochondrial	UniProtKB:Q8GWJ4|PTN001617811	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2132223	MCM7	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000180038|MGI:MGI:1298398|UniProtKB:P33993|SGD:S000000406	P	DNA replication licensing factor MCM7	UniProtKB:P43299|PTN001360298	protein	taxon:3702	20211215	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2042674	MCM4	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000179968|SGD:S000006223|UniProtKB:P33991|MGI:MGI:103199	P	DNA replication licensing factor MCM4	UniProtKB:Q0WVF5|PTN000180037	protein	taxon:3702	20211215	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2180255	RECQSIM	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like SIM	UniProtKB:Q9FT69|PTN000345089	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2086889	At3g18580	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Nucleic acid-binding, OB-fold-like protein	UniProtKB:Q9LII1|PTN000033861	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2015721	OSB4	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Protein OSB4, chloroplastic	UniProtKB:Q9FYJ2|PTN001617809	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2136083	At4g11060	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Single-stranded DNA-binding protein, mitochondrial	UniProtKB:Q84J78|PTN000033858	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2134766	RPA1E	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Replication protein A 70 kDa DNA-binding subunit E	UniProtKB:F4JSG3|PTN000588701	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:1005716636	At2g05642	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Nucleic acid-binding, OB-fold-like protein	UniProtKB:F4IHC4|PTN000031790	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2206031	RECQL4B	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 4B	UniProtKB:Q9FT70|PTN001009451	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2015353	OSB1	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000033807|FB:FBgn0010438|UniProtKB:Q04837	P	Protein OSB1, mitochondrial	UniProtKB:Q9SX99|PTN001617821	protein	taxon:3702	20240820	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2173527	RPA1D	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Replication protein A 70 kDa DNA-binding subunit D	UniProtKB:Q9FME0|PTN000588717	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2029799	RECQL5	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 5	UniProtKB:Q0WVW7|PTN000345174	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2142808	RPA1B	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Replication protein A 70 kDa DNA-binding subunit B	UniProtKB:Q9SD82|PTN000588718	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2197394	RECQL4A	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 4A	UniProtKB:Q8L840|PTN000345094	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2163553	RPA1C	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Replication protein A 70 kDa DNA-binding subunit C	UniProtKB:Q9FHJ6|PTN000588702	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2011521	At1g52950	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000588618|SGD:S000000065	P	Nucleic acid-binding, OB-fold-like protein	UniProtKB:Q9C926|PTN000588716	protein	taxon:3702	20210531	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0006268) -- `TAIR	locus:2197555	RECQL2	involved_in	GO:0006268	GO_REF:0000033	IBA	PANTHER:PTN000344874|SGD:S000004802	P	ATP-dependent DNA helicase Q-like 2	UniProtKB:Q9FT73|PTN000344925	protein	taxon:3702	20190319	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0016767) -- `TAIR	locus:2167225	PSY1	enables	GO:0016767	GO_REF:0000033	IBA	PANTHER:PTN000770577|TAIR:locus:2167225|UniProtKB:B6UV92|UniProtKB:P37294|UniProtKB:P37295|UniProtKB:B0KZ40|UniProtKB:Q6EI12|UniProtKB:A0A1U8GGI5|UniProtKB:Q2QLV9|UniProtKB:Q5Z5B7	F	Phytoene synthase, chloroplastic	UniProtKB:P37271|PTN000770585	protein	taxon:3702	20240919	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0046537) -- `TAIR	locus:2024357	PGM1	enables	GO:0046537	GO_REF:0000033	IBA	PANTHER:PTN000781248|TAIR:locus:2024357|TAIR:locus:2077793|WB:WBGene00019001|UniProtKB:P37689|UniProtKB:P39773	F	2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1	UniProtKB:O04499|PTN001587421	protein	taxon:3702	20210905	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0046537) -- `TAIR	locus:2077793	PGM2	enables	GO:0046537	GO_REF:0000033	IBA	PANTHER:PTN000781248|TAIR:locus:2024357|TAIR:locus:2077793|WB:WBGene00019001|UniProtKB:P37689|UniProtKB:P39773	F	Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2	UniProtKB:Q9M9K1|PTN000781264	protein	taxon:3702	20210905	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070413) -- `TAIR	locus:2202990	TPS1	involved_in	GO:0070413	GO_REF:0000033	IBA	PANTHER:PTN000846179|SGD:S000002481|PomBase:SPAC328.03	P	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1	UniProtKB:Q9SYM4|PTN000082213	protein	taxon:3702	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070413) -- `TAIR	locus:2137712	TPS4	involved_in	GO:0070413	GO_REF:0000033	IBA	PANTHER:PTN000846179|SGD:S000002481|PomBase:SPAC328.03	P	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4	UniProtKB:Q9T079|PTN001325000	protein	taxon:3702	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070413) -- `TAIR	locus:2020357	TPS2	involved_in	GO:0070413	GO_REF:0000033	IBA	PANTHER:PTN000846179|SGD:S000002481|PomBase:SPAC328.03	P	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2	UniProtKB:Q9FZ57|PTN002584066	protein	taxon:3702	20170228	GO_Central		
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070413) -- `UniProtKB	Q9SHG0	TPS3	involved_in	GO:0070413	GO_REF:0000033	IBA	PANTHER:PTN000846179|SGD:S000002481|PomBase:SPAC328.03	P	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3	UniProtKB:Q9SHG0|PTN000846279	protein	taxon:3702	20170228	GO_Central		
`
### gorule-0000022

Check for, and filter, annotations made to retracted publications

* total: 0
### gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

* total: 0
### gorule-0000029

IEAs should be less than one year old.

* total: 0
### gorule-0000030

Obsolete GO_REFs are not allowed

* total: 0
### gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

* total: 0
### gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

* total: 0
### gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

* total: 0
### gorule-0000043

Check for valid combination of evidence code and GO_REF

* total: 0
### gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 1
#### Messages
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `TAIR	locus:504955551	VPS25	enables	GO:0042803	GO_REF:0000033	IBA	PANTHER:PTN000322234|UniProtKB:Q9BRG1	F	Vacuolar protein sorting-associated protein 25	UniProtKB:Q8VZC9|PTN000322288	protein	taxon:3702	20170228	GO_Central		
`
### gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

* total: 0
### gorule-0000055

References should have only one ID per ID space

* total: 0
### gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

* total: 0
### gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 0
### gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

* total: 0
### gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

* total: 0
### gorule-0000065

Annotations to term that are candidates for obsoletion should be removed

* total: 0
### other

* total: 0