goslim pombe.owl
type: Ontology
version IRI: goslim pombe.owl
version info: 2024-01-26

definition
type: AnnotationProperty

term tracker item
type: AnnotationProperty
database_cross_reference: IAO:0000233
has_obo_namespace: external
id: term_tracker_item
is class level: true
is metadata tag: true
shorthand: term_tracker_item

has ontology root term
type: AnnotationProperty
database_cross_reference: IAO:0000700
has_obo_namespace: external
id: has_ontology_root_term
is class level: true
is metadata tag: true
shorthand: has_ontology_root_term

term replaced by
type: AnnotationProperty

chebi ph7 3
type: AnnotationProperty
comment: Rhea list of ChEBI terms representing the major species at pH 7.3.
sub property of: subset_property

gocheck do not annotate
type: AnnotationProperty
comment: Term not to be used for direct annotation
sub property of: subset_property

gocheck do not manually annotate
type: AnnotationProperty
comment: Term not to be used for direct manual annotation
sub property of: subset_property

goslim agr
type: AnnotationProperty
comment: AGR slim
sub property of: subset_property

goslim aspergillus
type: AnnotationProperty
comment: Aspergillus GO slim
sub property of: subset_property

goslim candida
type: AnnotationProperty
comment: Candida GO slim
sub property of: subset_property

goslim chembl
type: AnnotationProperty
comment: ChEMBL protein targets summary
sub property of: subset_property

goslim drosophila
type: AnnotationProperty
comment: Drosophila GO slim
sub property of: subset_property

goslim flybase ribbon
type: AnnotationProperty
comment: FlyBase Drosophila GO ribbon slim
sub property of: subset_property

goslim generic
type: AnnotationProperty
comment: Generic GO slim
sub property of: subset_property

goslim metagenomics
type: AnnotationProperty
comment: Metagenomics GO slim
sub property of: subset_property

goslim mouse
type: AnnotationProperty
comment: Mouse GO slim
sub property of: subset_property

goslim pir
type: AnnotationProperty
comment: PIR GO slim
sub property of: subset_property

goslim plant
type: AnnotationProperty
comment: Plant GO slim
sub property of: subset_property

goslim pombe
type: AnnotationProperty
comment: Fission yeast GO slim
sub property of: subset_property

goslim prokaryote
type: AnnotationProperty
comment: GO subset for prokaryotes
sub property of: subset_property

goslim synapse
type: AnnotationProperty
comment: synapse GO slim
sub property of: subset_property

goslim yeast
type: AnnotationProperty
comment: Yeast GO slim
sub property of: subset_property

label approved by the SynGO project
type: AnnotationProperty
sub property of: synonym_type_property

Systematic synonym
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

consider
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
inverse of: has part
type: TransitiveProperty
database_cross_reference: BFO:0000050
has_obo_namespace: external
id: part_of
shorthand: part_of

has part
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000051
has_obo_namespace: external
id: has_part
shorthand: has_part

occurs in
type: ObjectProperty
property chain axiom: part of
database_cross_reference: BFO:0000066
has_obo_namespace: external
id: occurs_in
shorthand: occurs_in

starts during
type: ObjectProperty
database_cross_reference: RO:0002091
has_obo_namespace: external
id: starts_during
shorthand: starts_during

happens during
type: ObjectProperty
sub property of: ends during
type: TransitiveProperty
database_cross_reference: RO:0002092
has_obo_namespace: external
id: happens_during
shorthand: happens_during

ends during
type: ObjectProperty
database_cross_reference: RO:0002093
has_obo_namespace: external
id: ends_during
shorthand: ends_during

regulates
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: RO:0002211
has_obo_namespace: external
id: regulates
shorthand: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates
database_cross_reference: RO:0002212
has_obo_namespace: external
id: negatively_regulates
shorthand: negatively_regulates

positively regulates
type: ObjectProperty
sub property of: regulates
property chain axiom: negatively regulates
database_cross_reference: RO:0002213
has_obo_namespace: external
id: positively_regulates
shorthand: positively_regulates

mitotic sister chromatid segregation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
has_alternative_id: GO:0016359
has_exact_synonym: mitotic chromosome segregation
has_narrow_synonym: mitotic sister-chromatid adhesion release
has_obo_namespace: biological_process
id: GO:0000070
in_subset: goslim pombe

Axiom
annotated source: mitotic sister chromatid segregation
annotated property: definition
annotated target: The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
database_cross_reference: GOC:ai
database_cross_reference: GOC:jl

microtubule cytoskeleton organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
term tracker item: https://github.com/geneontology/go-ontology/issues/23114
term tracker item: https://github.com/geneontology/go-ontology/issues/23195
has_exact_synonym: microtubule cytoskeleton organisation
has_obo_namespace: biological_process
has_related_synonym: microtubule cytoskeleton organization and biogenesis
id: GO:0000226
in_subset: goslim pombe

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
database_cross_reference: GOC:mah

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: has_exact_synonym
annotated target: microtubule cytoskeleton organisation
database_cross_reference: GOC:mah

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: has_related_synonym
annotated target: microtubule cytoskeleton organization and biogenesis
database_cross_reference: GOC:mah

mitotic cytokinesis
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
subclass of: Restriction
  on property: has part
  some values from: membrane organization
definition: A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
has_exact_synonym: cytokinesis after mitosis
has_obo_namespace: biological_process
id: GO:0000281
in_subset: goslim pombe

Axiom
annotated source: mitotic cytokinesis
annotated property: definition
annotated target: A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
database_cross_reference: GOC:mtg_cell_cycle

conjugation with cellular fusion
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has part
  some values from: membrane organization
definition: A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae.
has_alternative_id: GO:0007322
has_alternative_id: GO:0007333
has_alternative_id: GO:0030461
has_alternative_id: GO:0030477
database_cross_reference: Wikipedia:Conjugation
has_obo_namespace: biological_process
has_related_synonym: cell fusion
has_related_synonym: mating
id: GO:0000747
in_subset: goslim candida
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: conjugation with cellular fusion
annotated property: definition
annotated target: A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae.
database_cross_reference: GOC:elh

cytoplasmic translation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
subclass of: Restriction
  on property: has part
  some values from: biological_process
definition: The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
created by: hjd
creation date: 2011-06-09T03:11:53Z
has_obo_namespace: biological_process
id: GO:0002181
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that this term applies to translation performed by cytoplasmic ribosomes, which is distinct from translation performed by organellar ribosomes. For mitochondrial translation, consider GO:0032543 'mitochondrial translation' or its child terms.

Axiom
annotated source: cytoplasmic translation
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
database_cross_reference: GOC:hjd

carbohydrate metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
term tracker item: https://github.com/geneontology/go-ontology/issues/22880
created by: jl
creation date: 2012-10-23T15:40:34Z
has_alternative_id: GO:0044261
has_alternative_id: GO:0044723
database_cross_reference: Wikipedia:Carbohydrate_metabolism
has_exact_synonym: carbohydrate metabolism
has_obo_namespace: biological_process
id: GO:0005975
in_subset: goslim agr
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: carbohydrate metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
database_cross_reference: GOC:mah
database_cross_reference: ISBN:0198506732

generation of precursor metabolites and energy
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
has_broad_synonym: energy pathways
has_obo_namespace: biological_process
has_related_synonym: intermediary metabolism
has_related_synonym: metabolic energy generation
id: GO:0006091
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: generation of precursor metabolites and energy
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
database_cross_reference: GOC:jl

Axiom
annotated source: generation of precursor metabolites and energy
annotated property: has_related_synonym
annotated target: intermediary metabolism
database_cross_reference: GOC:mah

DNA replication
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has part
  some values from: biological_process
definition: The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by the origin recognition complex, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
term tracker item: https://github.com/geneontology/go-ontology/issues/10596
has_alternative_id: GO:0055133
database_cross_reference: Wikipedia:DNA_replication
has_obo_namespace: biological_process
id: GO:0006260
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast
comment: DNA biosynthesis is only part of this process. See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'.

Axiom
annotated source: DNA replication
annotated property: definition
annotated target: The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by the origin recognition complex, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
database_cross_reference: GOC:mah

DNA repair
type: Class
subclass of: biological_process
definition: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
database_cross_reference: Wikipedia:DNA_repair
has_obo_namespace: biological_process
id: GO:0006281
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: DNA repair
annotated property: definition
annotated target: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
database_cross_reference: PMID:11563486

DNA recombination
type: Class
subclass of: biological_process
definition: Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
has_obo_namespace: biological_process
id: GO:0006310
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: DNA recombination
annotated property: definition
annotated target: Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
database_cross_reference: ISBN:0198506732

chromatin organization
type: Class
subclass of: biological_process
definition: The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA.
term tracker item: https://github.com/geneontology/go-ontology/issues/22130
term tracker item: https://github.com/geneontology/go-ontology/issues/23549
has_alternative_id: GO:0006333
has_alternative_id: GO:0006336
has_alternative_id: GO:0016568
has_alternative_id: GO:0031497
has_alternative_id: GO:0034724
has_broad_synonym: chromatin maintenance
has_exact_synonym: chromatin organisation
has_exact_synonym: establishment of chromatin architecture
has_exact_synonym: establishment or maintenance of chromatin architecture
has_narrow_synonym: DNA replication-independent chromatin assembly
has_narrow_synonym: DNA replication-independent chromatin organization
has_narrow_synonym: DNA replication-independent nucleosome organisation
has_narrow_synonym: DNA replication-independent nuclesome assembly
has_narrow_synonym: chromatin assembly
has_narrow_synonym: transcription-coupled nucleosome assembly
has_obo_namespace: biological_process
has_related_synonym: chromatin assembly or disassembly
has_related_synonym: chromatin assembly/disassembly
has_related_synonym: chromatin modification
id: GO:0006325
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: chromatin organization
annotated property: definition
annotated target: The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA.
database_cross_reference: PMID:20404130

Axiom
annotated source: chromatin organization
annotated property: has_exact_synonym
annotated target: chromatin organisation
database_cross_reference: GOC:mah

Axiom
annotated source: chromatin organization
annotated property: has_exact_synonym
annotated target: establishment of chromatin architecture
database_cross_reference: GOC:mah

Axiom
annotated source: chromatin organization
annotated property: has_exact_synonym
annotated target: establishment or maintenance of chromatin architecture
database_cross_reference: GOC:mah

DNA-templated transcription
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The synthesis of an RNA transcript from a DNA template.
term tracker item: https://github.com/geneontology/go-ontology/issues/14854
term tracker item: https://github.com/geneontology/go-ontology/issues/16737
term tracker item: https://github.com/geneontology/go-ontology/issues/22258
term tracker item: https://github.com/geneontology/go-ontology/issues/22555
has_alternative_id: GO:0001121
has_alternative_id: GO:0006350
has_alternative_id: GO:0061018
has_alternative_id: GO:0061022
has_broad_synonym: cellular transcription
has_broad_synonym: transcription
database_cross_reference: Wikipedia:Transcription_(genetics)
has_exact_synonym: DNA-dependent transcription
has_exact_synonym: transcription, DNA-dependent
has_exact_synonym: transcription, DNA-templated
has_narrow_synonym: bacterial transcription
has_narrow_synonym: transcription from bacterial-type RNA polymerase promoter
has_obo_namespace: biological_process
id: GO:0006351
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim mouse
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: DNA-templated transcription
annotated property: definition
annotated target: The synthesis of an RNA transcript from a DNA template.
database_cross_reference: GOC:jl
database_cross_reference: GOC:txnOH

Axiom
annotated source: DNA-templated transcription
annotated property: has_exact_synonym
annotated target: transcription, DNA-dependent
database_cross_reference: GOC:txnOH

tRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
has_exact_synonym: tRNA metabolism
has_obo_namespace: biological_process
id: GO:0006399
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe

Axiom
annotated source: tRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
database_cross_reference: ISBN:0198506732

protein folding
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: protein maturation
definition: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
term tracker item: https://github.com/geneontology/go-ontology/issues/25673
has_alternative_id: GO:0007022
has_alternative_id: GO:0007024
has_alternative_id: GO:0007025
database_cross_reference: Wikipedia:Protein_folding
has_narrow_synonym: alpha-tubulin folding
has_narrow_synonym: beta-tubulin folding
has_narrow_synonym: chaperonin-mediated tubulin folding
has_obo_namespace: biological_process
has_related_synonym: chaperone activity
has_related_synonym: chaperonin ATPase activity
has_related_synonym: co-chaperone activity
has_related_synonym: co-chaperonin activity
has_related_synonym: glycoprotein-specific chaperone activity
has_related_synonym: non-chaperonin molecular chaperone ATPase activity
has_related_synonym: protein complex assembly, multichaperone pathway
id: GO:0006457
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: protein folding
annotated property: definition
annotated target: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:rb

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: alpha-tubulin folding
database_cross_reference: GOC:mah

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: beta-tubulin folding
database_cross_reference: GOC:mah

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: chaperonin-mediated tubulin folding
database_cross_reference: GOC:mah

protein glycosylation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
has_alternative_id: GO:0065006
has_exact_synonym: protein amino acid glycosylation
has_obo_namespace: biological_process
has_related_synonym: protein-carbohydrate complex assembly
id: GO:0006486
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: protein glycosylation
annotated property: definition
annotated target: A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
database_cross_reference: GOC:curators
database_cross_reference: GOC:pr

Axiom
annotated source: protein glycosylation
annotated property: has_exact_synonym
annotated target: protein amino acid glycosylation
database_cross_reference: GOC:bf

amino acid metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups.
term tracker item: https://github.com/geneontology/go-ontology/issues/17904
has_alternative_id: GO:0006519
has_exact_synonym: cellular amino acid metabolic process
has_exact_synonym: cellular amino acid metabolism
has_obo_namespace: biological_process
has_related_synonym: amino acid and derivative metabolism
has_related_synonym: cellular amino acid and derivative metabolic process
id: GO:0006520
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: amino acid metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups.
database_cross_reference: ISBN:0198506732

protein targeting
type: Class
subclass of: biological_process
definition: The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
term tracker item: https://github.com/geneontology/go-ontology/issues/26248
database_cross_reference: Wikipedia:Protein_targeting
has_narrow_synonym: protein sorting along secretory pathway
has_obo_namespace: biological_process
has_related_synonym: nascent polypeptide association
id: GO:0006605
in_subset: goslim chembl
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: protein targeting
annotated property: definition
annotated target: The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
database_cross_reference: GOC:ma

lipid metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
database_cross_reference: Wikipedia:Lipid_metabolism
has_exact_synonym: lipid metabolism
has_obo_namespace: biological_process
id: GO:0006629
in_subset: goslim agr
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim mouse
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: lipid metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
database_cross_reference: GOC:ma

ubiquinone biosynthetic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
database_cross_reference: MetaCyc:UBISYN-PWY
has_exact_synonym: coenzyme Q biosynthesis
has_exact_synonym: coenzyme Q biosynthetic process
has_exact_synonym: ubiquinone anabolism
has_exact_synonym: ubiquinone biosynthesis
has_exact_synonym: ubiquinone formation
has_exact_synonym: ubiquinone synthesis
has_narrow_synonym: coenzyme Q10 biosynthesis
has_narrow_synonym: coenzyme Q10 biosynthetic process
has_narrow_synonym: coenzyme Q6 biosynthesis
has_narrow_synonym: coenzyme Q6 biosynthetic process
has_narrow_synonym: coenzyme Q8 biosynthesis
has_narrow_synonym: coenzyme Q8 biosynthetic process
has_narrow_synonym: coenzyme Q9 biosynthesis
has_narrow_synonym: coenzyme Q9 biosynthetic process
has_obo_namespace: biological_process
id: GO:0006744
in_subset: goslim drosophila
in_subset: goslim pombe

Axiom
annotated source: ubiquinone biosynthetic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.
database_cross_reference: GOC:mah

vitamin metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
has_exact_synonym: vitamin metabolism
has_obo_namespace: biological_process
id: GO:0006766
in_subset: goslim candida
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: vitamin metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
database_cross_reference: GOC:ai

sulfur compound metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.
database_cross_reference: Wikipedia:Sulfur_metabolism
has_exact_synonym: sulfur metabolism
has_exact_synonym: sulphur metabolic process
has_exact_synonym: sulphur metabolism
has_obo_namespace: biological_process
id: GO:0006790
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: sulfur compound metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.
database_cross_reference: GOC:ai

nucleocytoplasmic transport
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The directed movement of molecules between the nucleus and the cytoplasm.
has_alternative_id: GO:0000063
has_narrow_synonym: nucleocytoplasmic shuttling
has_obo_namespace: biological_process
id: GO:0006913
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
comment: Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane, and is not traversed.

Axiom
annotated source: nucleocytoplasmic transport
annotated property: definition
annotated target: The directed movement of molecules between the nucleus and the cytoplasm.
database_cross_reference: GOC:go_curators

autophagy
type: Class
subclass of: biological_process
definition: The cellular catabolic process in which cells digest cellular materials, such as organelles and other macromolecular constituents, or non-self materials such as intracellular pathogens. Autophagy serves to provide essential nutrients under conditions of cellular stress; or can remodel intracellular structures during cell differentiation.
term tracker item: https://github.com/geneontology/go-ontology/issues/25541#issuecomment-1740659745
has_alternative_id: GO:0016238
database_cross_reference: Wikipedia:Autophagy_(cellular)
has_obo_namespace: biological_process
id: GO:0006914
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe

Axiom
annotated source: autophagy
annotated property: definition
annotated target: The cellular catabolic process in which cells digest cellular materials, such as organelles and other macromolecular constituents, or non-self materials such as intracellular pathogens. Autophagy serves to provide essential nutrients under conditions of cellular stress; or can remodel intracellular structures during cell differentiation.
database_cross_reference: GOC:autophagy
database_cross_reference: ISBN:0198547684
database_cross_reference: PMID:11099404
database_cross_reference: PMID:29455577
database_cross_reference: PMID:9412464

mitochondrion organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
has_exact_synonym: mitochondria organization
has_exact_synonym: mitochondrial biogenesis
has_exact_synonym: mitochondrial organization
has_exact_synonym: mitochondrion biogenesis
has_exact_synonym: mitochondrion organisation
has_obo_namespace: biological_process
has_related_synonym: mitochondrion organization and biogenesis
id: GO:0007005
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: mitochondrion organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah
database_cross_reference: GOC:sgd_curators
database_cross_reference: PMID:9786946

Axiom
annotated source: mitochondrion organization
annotated property: has_exact_synonym
annotated target: mitochondria organization
database_cross_reference: GOC:mah

Axiom
annotated source: mitochondrion organization
annotated property: has_exact_synonym
annotated target: mitochondrion organisation
database_cross_reference: GOC:mah

peroxisome organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
has_exact_synonym: peroxisome organisation
has_obo_namespace: biological_process
has_related_synonym: peroxisome organization and biogenesis
id: GO:0007031
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: peroxisome organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
database_cross_reference: GOC:mah

Axiom
annotated source: peroxisome organization
annotated property: has_related_synonym
annotated target: peroxisome organization and biogenesis
database_cross_reference: GOC:mah

cell adhesion
type: Class
subclass of: biological_process
definition: The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
created by: dos
creation date: 2014-04-15T15:59:10Z
has_alternative_id: GO:0098602
database_cross_reference: Wikipedia:Cell_adhesion
has_obo_namespace: biological_process
has_related_synonym: cell adhesion molecule activity
has_related_synonym: single organism cell adhesion
id: GO:0007155
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: cell adhesion
annotated property: definition
annotated target: The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
database_cross_reference: GOC:hb
database_cross_reference: GOC:pf

establishment or maintenance of cell polarity
type: Class
subclass of: biological_process
definition: Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns.
has_alternative_id: GO:0030012
has_alternative_id: GO:0030467
has_obo_namespace: biological_process
has_related_synonym: cell polarity
has_related_synonym: establishment and/or maintenance of cell polarity
has_related_synonym: establishment and/or maintenance of cell polarization
id: GO:0007163
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: establishment or maintenance of cell polarity
annotated property: definition
annotated target: Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns.
database_cross_reference: GOC:mah

Axiom
annotated source: establishment or maintenance of cell polarity
annotated property: has_related_synonym
annotated target: cell polarity
database_cross_reference: GOC:mah
database_cross_reference: GOC:vw

biological_process
type: Class
definition: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
term tracker item: https://github.com/geneontology/go-ontology/issues/24968
created by: jl
creation date: 2012-09-19T15:05:24Z
has_alternative_id: GO:0000004
has_alternative_id: GO:0007582
has_alternative_id: GO:0044699
database_cross_reference: Wikipedia:Biological_process
has_exact_synonym: biological process
has_exact_synonym: physiological process
has_obo_namespace: biological_process
has_related_synonym: single organism process
has_related_synonym: single-organism process
id: GO:0008150
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.

Axiom
annotated source: biological_process
annotated property: definition
annotated target: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
database_cross_reference: GOC:pdt

mRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
has_exact_synonym: mRNA metabolism
has_obo_namespace: biological_process
id: GO:0016071
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: mRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
database_cross_reference: ISBN:0198506732

snRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving snRNA, small nuclear RNA, any of various low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein.
has_exact_synonym: snRNA metabolism
has_obo_namespace: biological_process
id: GO:0016073
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe

Axiom
annotated source: snRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving snRNA, small nuclear RNA, any of various low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein.
database_cross_reference: ISBN:0198506732

sno(s)RNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.
has_narrow_synonym: box C/D sRNA metabolic process
has_narrow_synonym: snoRNA metabolism
has_obo_namespace: biological_process
id: GO:0016074
in_subset: goslim drosophila
in_subset: goslim pombe

Axiom
annotated source: sno(s)RNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.
database_cross_reference: GOC:krc

vesicle-mediated transport
type: Class
subclass of: biological_process
definition: A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
term tracker item: https://github.com/geneontology/go-ontology/issues/25421
has_alternative_id: GO:0006899
has_exact_synonym: vesicle transport
has_exact_synonym: vesicular transport
has_narrow_synonym: nonselective vesicle transport
has_obo_namespace: biological_process
has_related_synonym: protein sorting along secretory pathway
has_related_synonym: vesicle trafficking
id: GO:0016192
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe

Axiom
annotated source: vesicle-mediated transport
annotated property: definition
annotated target: A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
database_cross_reference: GOC:ai
database_cross_reference: GOC:mah
database_cross_reference: ISBN:08789310662000

Axiom
annotated source: vesicle-mediated transport
annotated property: has_exact_synonym
annotated target: vesicular transport
database_cross_reference: GOC:mah

iron-sulfur cluster assembly
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
has_exact_synonym: iron-sulphur cluster assembly
has_obo_namespace: biological_process
has_related_synonym: iron-sulfur cluster biosynthesis
id: GO:0016226
in_subset: goslim metagenomics
in_subset: goslim pombe

Axiom
annotated source: iron-sulfur cluster assembly
annotated property: definition
annotated target: The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah
database_cross_reference: GOC:pde
database_cross_reference: GOC:vw

secondary metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients.
database_cross_reference: Wikipedia:Secondary_metabolism
has_exact_synonym: secondary metabolism
has_exact_synonym: secondary metabolite metabolic process
has_exact_synonym: secondary metabolite metabolism
has_obo_namespace: biological_process
id: GO:0019748
in_subset: goslim chembl
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe

Axiom
annotated source: secondary metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients.
database_cross_reference: GOC:go_curators

signaling
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: regulates
  some values from: biological_process
definition: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
created by: jl
creation date: 2010-02-16T09:30:50Z
has_alternative_id: GO:0023046
has_alternative_id: GO:0044700
has_exact_synonym: biological signaling
has_exact_synonym: signaling process
has_exact_synonym: signalling
has_obo_namespace: biological_process
has_related_synonym: signalling process
has_related_synonym: single organism signaling
id: GO:0023052
in_subset: goslim agr
in_subset: goslim flybase ribbon
in_subset: goslim generic
in_subset: goslim mouse
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast
comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.

Axiom
annotated source: signaling
annotated property: definition
annotated target: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
database_cross_reference: GOC:mtg_signal
database_cross_reference: GOC:mtg_signaling_feb11
database_cross_reference: GOC:signaling

Axiom
annotated source: signaling
annotated property: has_related_synonym
annotated target: signalling process
database_cross_reference: GOC:mah

actin cytoskeleton organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
term tracker item: https://github.com/geneontology/go-ontology/issues/23114
has_exact_synonym: actin cytoskeleton organisation
has_obo_namespace: biological_process
has_related_synonym: actin cytoskeleton organization and biogenesis
has_related_synonym: actin modulating activity
id: GO:0030036
in_subset: goslim pombe

Axiom
annotated source: actin cytoskeleton organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah

Axiom
annotated source: actin cytoskeleton organization
annotated property: has_related_synonym
annotated target: actin cytoskeleton organization and biogenesis
database_cross_reference: GOC:mah

protein catabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
term tracker item: https://github.com/geneontology/go-ontology/issues/23112
has_alternative_id: GO:0044254
has_alternative_id: GO:0044257
database_cross_reference: Wikipedia:Protein_catabolism
has_exact_synonym: cellular protein breakdown
has_exact_synonym: cellular protein catabolic process
has_exact_synonym: cellular protein catabolism
has_exact_synonym: cellular protein degradation
has_exact_synonym: protein breakdown
has_exact_synonym: protein catabolism
has_exact_synonym: protein degradation
has_narrow_synonym: multicellular organismal protein catabolic process
has_obo_namespace: biological_process
has_related_synonym: pheromone catabolic process
has_related_synonym: pheromone catabolism
id: GO:0030163
in_subset: goslim candida
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote
comment: This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.

Axiom
annotated source: protein catabolic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
database_cross_reference: GOC:mah

ascospore formation
type: Class
subclass of: meiotic cell cycle process
definition: The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
has_alternative_id: GO:0007151
has_broad_synonym: spore formation
has_broad_synonym: sporulation
has_exact_synonym: ascospore biosynthesis
has_obo_namespace: biological_process
id: GO:0030437
in_subset: goslim pombe
comment: Note that ascospores and asci are separate biological structures. The ascus is the structure that contain the ascospores, but the development of the ascus is a different process than the formation of the ascospores themselves; for instance, some mutations affect sporulation without affecting ascus development. For this reason, GO:0030437 ascospore formation and GO:0075317 ascus development are different terms and are not linked.

Axiom
annotated source: ascospore formation
annotated property: definition
annotated target: The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
database_cross_reference: GOC:di
database_cross_reference: GOC:mah
database_cross_reference: GOC:mcc
database_cross_reference: PMID:16339736

intracellular phosphate ion homeostasis
type: Class
subclass of: inorganic ion homeostasis
definition: A homeostatic process involved in the maintenance of a steady state level of phosphate ions within a cell.
term tracker item: https://github.com/geneontology/go-ontology/issues/26429
has_broad_synonym: intracellular phosphate homeostasis
has_exact_synonym: cellular phosphate ion homeostasis
has_exact_synonym: intracellular Pi homeostasis
has_obo_namespace: biological_process
id: GO:0030643
in_subset: goslim pombe

Axiom
annotated source: intracellular phosphate ion homeostasis
annotated property: definition
annotated target: A homeostatic process involved in the maintenance of a steady state level of phosphate ions within a cell.
database_cross_reference: GOC:mah

telomere organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
has_exact_synonym: chromosome organization, telomeric
has_exact_synonym: organization of chromosome, telomeric region
has_exact_synonym: telomere organisation
has_obo_namespace: biological_process
has_related_synonym: telomere organization and biogenesis
id: GO:0032200
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: telomere organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah

Axiom
annotated source: telomere organization
annotated property: has_exact_synonym
annotated target: telomere organisation
database_cross_reference: GOC:mah

Axiom
annotated source: telomere organization
annotated property: has_related_synonym
annotated target: telomere organization and biogenesis
database_cross_reference: GOC:mah

tetrapyrrole metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
has_exact_synonym: tetrapyrrole metabolism
has_obo_namespace: biological_process
id: GO:0033013
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: tetrapyrrole metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
database_cross_reference: GOC:mah

lipoprotein biosynthetic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
has_exact_synonym: lipoprotein anabolism
has_exact_synonym: lipoprotein biosynthesis
has_exact_synonym: lipoprotein formation
has_exact_synonym: lipoprotein synthesis
has_obo_namespace: biological_process
id: GO:0042158
in_subset: goslim pombe

Axiom
annotated source: lipoprotein biosynthetic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
database_cross_reference: ISBN:0198506732

ribosome biogenesis
type: Class
subclass of: biological_process
definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
has_alternative_id: GO:0007046
has_exact_synonym: ribosome biogenesis and assembly
has_obo_namespace: biological_process
id: GO:0042254
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: ribosome biogenesis
annotated property: definition
annotated target: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
database_cross_reference: GOC:ma
database_cross_reference: PMID:26404467
database_cross_reference: Wikipedia:Ribosome_biogenesis

pteridine-containing compound biosynthetic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the formation of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.
has_exact_synonym: pteridine and derivative biosynthesis
has_exact_synonym: pteridine and derivative biosynthetic process
has_exact_synonym: pteridine-containing compound anabolism
has_exact_synonym: pteridine-containing compound biosynthesis
has_exact_synonym: pteridine-containing compound formation
has_exact_synonym: pteridine-containing compound synthesis
has_narrow_synonym: pterin biosynthesis
has_narrow_synonym: pterin biosynthetic process
has_obo_namespace: biological_process
id: GO:0042559
in_subset: goslim pombe

Axiom
annotated source: pteridine-containing compound biosynthetic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0198506732

mitotic cell cycle phase transition
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase.
created by: jl
creation date: 2013-02-28T13:09:33Z
has_obo_namespace: biological_process
id: GO:0044772
in_subset: goslim pombe

Axiom
annotated source: mitotic cell cycle phase transition
annotated property: definition
annotated target: The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase.
database_cross_reference: GOC:mtg_cell_cycle

protein maturation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: Any process leading to the attainment of the full functional capacity of a protein.
has_obo_namespace: biological_process
id: GO:0051604
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: protein maturation
annotated property: definition
annotated target: Any process leading to the attainment of the full functional capacity of a protein.
database_cross_reference: GOC:ai

transmembrane transport
type: Class
subclass of: biological_process
definition: The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
created by: tb
creation date: 2015-10-21T13:22:47Z
has_alternative_id: GO:0090662
has_exact_synonym: membrane transport
has_narrow_synonym: ATP hydrolysis coupled transmembrane transport
has_obo_namespace: biological_process
id: GO:0055085
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast
comment: Transmembrane transport is the transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. Note also that this term is not intended for use in annotating lateral movement within membranes.

Axiom
annotated source: transmembrane transport
annotated property: definition
annotated target: The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jid

nucleobase-containing small molecule metabolic process
type: Class
subclass of: biological_process
definition: The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
has_exact_synonym: nucleobase, nucleoside and nucleotide metabolism
has_obo_namespace: biological_process
has_related_synonym: nucleobase, nucleoside and nucleotide metabolic process
id: GO:0055086
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: definition
annotated target: The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
database_cross_reference: GOC:vw

membrane organization
type: Class
subclass of: biological_process
definition: A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
created by: jl
creation date: 2010-02-08T02:43:11Z
has_alternative_id: GO:0016044
has_alternative_id: GO:0044802
has_exact_synonym: cellular membrane organisation
has_exact_synonym: cellular membrane organization
has_exact_synonym: membrane organisation
has_obo_namespace: biological_process
has_related_synonym: membrane organization and biogenesis
has_related_synonym: single-organism membrane organization
id: GO:0061024
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: membrane organization
annotated property: definition
annotated target: A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb

Axiom
annotated source: membrane organization
annotated property: has_exact_synonym
annotated target: membrane organisation
database_cross_reference: GOC:mah

Axiom
annotated source: membrane organization
annotated property: has_related_synonym
annotated target: membrane organization and biogenesis
database_cross_reference: GOC:mah

protein-containing complex assembly
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex.
term tracker item: https://github.com/geneontology/go-ontology/issues/22580
has_alternative_id: GO:0006461
has_alternative_id: GO:0034622
has_alternative_id: GO:0043623
has_exact_synonym: cellular protein complex assembly
has_obo_namespace: biological_process
has_related_synonym: cellular macromolecule complex assembly
has_related_synonym: cellular protein-containing complex assembly
has_related_synonym: chaperone activity
has_related_synonym: macromolecular complex assembly
has_related_synonym: macromolecule complex assembly
has_related_synonym: protein complex assembly
has_related_synonym: protein complex formation
id: GO:0065003
in_subset: goslim chembl
in_subset: goslim drosophila
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: protein-containing complex assembly
annotated property: definition
annotated target: The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex.
database_cross_reference: GOC:jl

protein modification by small protein conjugation or removal
type: Class
subclass of: biological_process
definition: A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.
created by: mah
creation date: 2009-05-11T02:54:03Z
has_obo_namespace: biological_process
id: GO:0070647
in_subset: goslim drosophila
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: protein modification by small protein conjugation or removal
annotated property: definition
annotated target: A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.
database_cross_reference: GOC:mah

cell wall organization or biogenesis
type: Class
subclass of: biological_process
definition: A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.
created by: mah
creation date: 2010-01-13T03:19:38Z
has_alternative_id: GO:0070882
has_exact_synonym: cell wall organisation or biogenesis
has_exact_synonym: cell wall organization or biogenesis at cellular level
has_exact_synonym: cellular cell wall organisation or biogenesis
has_exact_synonym: cellular cell wall organization or biogenesis
has_obo_namespace: biological_process
id: GO:0071554
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote
in_subset: goslim yeast

Axiom
annotated source: cell wall organization or biogenesis
annotated property: definition
annotated target: A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cell wall organisation or biogenesis
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cell wall organization or biogenesis at cellular level
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cellular cell wall organisation or biogenesis
database_cross_reference: GOC:mah

nitrogen cycle metabolic process
type: Class
subclass of: biological_process
definition: A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.
created by: mah
creation date: 2010-09-30T05:21:03Z
database_cross_reference: Wikipedia:Nitrogen_cycle
has_obo_namespace: biological_process
id: GO:0071941
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: nitrogen cycle metabolic process
annotated property: definition
annotated target: A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.
database_cross_reference: GOC:mah
database_cross_reference: PMID:16675690
database_cross_reference: Wikipedia:Nitrogen_cycle

protein localization to plasma membrane
type: Class
subclass of: biological_process
definition: A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane.
created by: tb
creation date: 2009-07-10T10:29:23Z
has_alternative_id: GO:0072661
has_alternative_id: GO:0090002
has_obo_namespace: biological_process
has_related_synonym: protein localisation in plasma membrane
has_related_synonym: protein localization in plasma membrane
has_related_synonym: protein targeting to plasma membrane
has_related_synonym: protein-plasma membrane targeting
id: GO:0072659
in_subset: goslim generic
in_subset: goslim pombe

Axiom
annotated source: protein localization to plasma membrane
annotated property: has_related_synonym
annotated target: protein localisation in plasma membrane
database_cross_reference: GOC:mah

Axiom
annotated source: protein localization to plasma membrane
annotated property: has_related_synonym
annotated target: protein-plasma membrane targeting
database_cross_reference: GOC:mah

Axiom
annotated source: protein localization to plasma membrane
annotated property: definition
annotated target: A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane.
database_cross_reference: GOC:mah

detoxification
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.
has_obo_namespace: biological_process
id: GO:0098754
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim prokaryote

Axiom
annotated source: detoxification
annotated property: definition
annotated target: Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.
database_cross_reference: GOC:dos

inorganic ion homeostasis
type: Class
subclass of: biological_process
definition: Any process involved in the maintenance of an internal steady state of inorganic ions within an organism or cell.
term tracker item: https://github.com/geneontology/go-ontology/issues/24455
has_obo_namespace: biological_process
id: GO:0098771
in_subset: goslim pombe

Axiom
annotated source: inorganic ion homeostasis
annotated property: definition
annotated target: Any process involved in the maintenance of an internal steady state of inorganic ions within an organism or cell.
database_cross_reference: GOC:dos

meiotic drive
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: A biological process that results in the unequal transmission of alleles, haplotypes, or chromosomes from a parental genome to gametes. In the absence of meiotic drive, the two copies of each gene or chromosome in a diploid organism are transmitted to offspring with equal probability, whereas meiotic drive results in overrepresentation of the driving allele among the surviving products of meiosis.
created by: kmv
creation date: 2019-01-02T17:37:09Z
has_obo_namespace: biological_process
id: GO:0110134
in_subset: goslim pombe

Axiom
annotated source: meiotic drive
annotated property: definition
annotated target: A biological process that results in the unequal transmission of alleles, haplotypes, or chromosomes from a parental genome to gametes. In the absence of meiotic drive, the two copies of each gene or chromosome in a diploid organism are transmitted to offspring with equal probability, whereas meiotic drive results in overrepresentation of the driving allele among the surviving products of meiosis.
database_cross_reference: GOC:mah
database_cross_reference: PMID:26920473
database_cross_reference: PMID:29322557
database_cross_reference: PMID:29499907

mitochondrial gene expression
type: Class
subclass of: biological_process
definition: The process in which a mitochondrial gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
created by: pg
creation date: 2017-06-26T10:57:45Z
has_obo_namespace: biological_process
id: GO:0140053
in_subset: goslim generic
in_subset: goslim pombe

Axiom
annotated source: mitochondrial gene expression
annotated property: definition
annotated target: The process in which a mitochondrial gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
database_cross_reference: PMID:27058308

organelle localization by membrane tethering
type: Class
subclass of: biological_process
definition: The process by which an organelle membrane interacts with another membrane via molecular tethers that physically bridge the two membranes and attach them to each other.
created by: pg
creation date: 2017-06-27T09:58:51Z
has_obo_namespace: biological_process
id: GO:0140056
in_subset: goslim pombe

Axiom
annotated source: organelle localization by membrane tethering
annotated property: definition
annotated target: The process by which an organelle membrane interacts with another membrane via molecular tethers that physically bridge the two membranes and attach them to each other.
database_cross_reference: PMID:27875684

meiotic cell cycle process
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: A process that is part of the meiotic cell cycle.
created by: jl
creation date: 2014-05-22T14:22:28Z
has_obo_namespace: biological_process
id: GO:1903046
in_subset: gocheck do not annotate
in_subset: goslim pombe

Axiom
annotated source: meiotic cell cycle process
annotated property: definition
annotated target: A process that is part of the meiotic cell cycle.
database_cross_reference: GOC:TermGenie
database_cross_reference: GOC:mtg_cell_cycle
database_cross_reference: GO_REF:0000060

preceded by
database_cross_reference: BFO:0000062
has_obo_namespace: external
id: preceded_by
shorthand: preceded_by

precedes
database_cross_reference: BFO:0000063
has_obo_namespace: external
id: precedes
shorthand: precedes

results in
created by: cjm
creation date: 2012-03-14T10:35:44Z
database_cross_reference: GOREL:0000040
has_obo_namespace: external
id: results_in
shorthand: results_in
comment: This relation is currently used to connect two regulation processes p1 and p2, such that if r1 regulates p1 and r2 regulates p2, and r1 results_in r2 then the regulation of p1 is required for the regulation of p2. For an example of use, see GO:0035958 'regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter'. Note that a precise definition of this relation is under discussion. After it has been formalized it will be added to RO, where it will have a RO ID. Note that the existing identifier and label are subject to change.

results in division of
database_cross_reference: GOREL:0001019
has_obo_namespace: external
id: results_in_division_of
shorthand: results_in_division_of
comment: use occurs_in

results in distribution of
database_cross_reference: GOREL:0002003
has_obo_namespace: external
id: results_in_distribution_of
shorthand: results_in_distribution_of

results in fission of
database_cross_reference: GOREL:0002004
has_obo_namespace: external
id: results_in_fission_of
shorthand: results_in_fission_of

results in maintenance of
database_cross_reference: GOREL:0012006
has_obo_namespace: external
id: results_in_maintenance_of
shorthand: results_in_maintenance_of

bearer of
database_cross_reference: RO:0000053
has_obo_namespace: external
id: bearer_of
shorthand: bearer_of

participates in
database_cross_reference: RO:0000056
has_obo_namespace: external
id: participates_in
shorthand: participates_in

has participant
database_cross_reference: RO:0000057
has_obo_namespace: external
id: has_participant
shorthand: has_participant

bounding layer of
database_cross_reference: RO:0002007
has_obo_namespace: external
id: bounding_layer_of
shorthand: bounding_layer_of

coincident with
database_cross_reference: RO:0002008
has_obo_namespace: external
id: coincident_with
shorthand: coincident_with

regulates in other organism
database_cross_reference: RO:0002010
has_obo_namespace: external
id: regulates_in_other_organism
shorthand: regulates_in_other_organism

has regulatory component activity
database_cross_reference: RO:0002013
has_obo_namespace: external
id: has_regulatory_component_activity
shorthand: has_regulatory_component_activity

has negative regulatory component activity
database_cross_reference: RO:0002014
has_obo_namespace: external
id: has_negative_regulatory_component_activity
shorthand: has_negative_regulatory_component_activity

has necessary component activity
database_cross_reference: RO:0002016
has_obo_namespace: external
id: has_necessary_component_activity
shorthand: has_necessary_component_activity

immediately preceded by
database_cross_reference: RO:0002087
has_obo_namespace: external
id: immediately_preceded_by
shorthand: immediately_preceded_by

immediately precedes
database_cross_reference: RO:0002090
has_obo_namespace: external
id: immediately_precedes
shorthand: immediately_precedes

overlaps
database_cross_reference: RO:0002131
has_obo_namespace: external
id: overlaps
shorthand: overlaps

has component
database_cross_reference: RO:0002180
has_obo_namespace: external
id: has_component
shorthand: has_component

capable of
database_cross_reference: RO:0002215
has_obo_namespace: external
id: capable_of
shorthand: capable_of

capable of part of
database_cross_reference: RO:0002216
has_obo_namespace: external
id: capable_of_part_of
shorthand: capable_of_part_of

adjacent to
database_cross_reference: RO:0002220
has_obo_namespace: external
id: adjacent_to
shorthand: adjacent_to

starts with
database_cross_reference: RO:0002224
has_obo_namespace: external
id: starts_with
shorthand: starts_with

ends with
database_cross_reference: RO:0002230
has_obo_namespace: external
id: ends_with
shorthand: ends_with

has start location
database_cross_reference: RO:0002231
has_obo_namespace: external
id: has_start_location
shorthand: has_start_location

has end location
database_cross_reference: RO:0002232
has_obo_namespace: external
id: has_end_location
shorthand: has_end_location

has input
database_cross_reference: RO:0002233
has_obo_namespace: external
id: has_input
shorthand: has_input

has output
database_cross_reference: RO:0002234
has_obo_namespace: external
id: has_output
shorthand: has_output

results in developmental progression of
database_cross_reference: RO:0002295
has_obo_namespace: external
id: results_in_developmental_progression_of
shorthand: results_in_developmental_progression_of

results in development of
database_cross_reference: RO:0002296
has_obo_namespace: external
id: results_in_development_of
shorthand: results_in_development_of

results in formation of
database_cross_reference: RO:0002297
has_obo_namespace: external
id: results_in_formation_of
shorthand: results_in_formation_of

results in morphogenesis of
database_cross_reference: RO:0002298
has_obo_namespace: external
id: results_in_morphogenesis_of
shorthand: results_in_morphogenesis_of

results in maturation of
database_cross_reference: RO:0002299
has_obo_namespace: external
id: results_in_maturation_of
shorthand: results_in_maturation_of

causally upstream of, positive effect
database_cross_reference: RO:0002304
has_obo_namespace: external
id: causally_upstream_of,_positive_effect
shorthand: causally_upstream_of,_positive_effect

causally upstream of, negative effect
database_cross_reference: RO:0002305
has_obo_namespace: external
id: causally_upstream_of,_negative_effect
shorthand: causally_upstream_of,_negative_effect

results in acquisition of features of
database_cross_reference: RO:0002315
has_obo_namespace: external
id: results_in_acquisition_of_features_of
shorthand: results_in_acquisition_of_features_of

regulates levels of
database_cross_reference: RO:0002332
has_obo_namespace: external
id: regulates_levels_of
shorthand: regulates_levels_of

regulated by
database_cross_reference: RO:0002334
has_obo_namespace: external
id: regulated_by
shorthand: regulated_by

negatively regulated by
database_cross_reference: RO:0002335
has_obo_namespace: external
id: negatively_regulated_by
shorthand: negatively_regulated_by

positively regulated by
database_cross_reference: RO:0002336
has_obo_namespace: external
id: positively_regulated_by
shorthand: positively_regulated_by

has target start location
database_cross_reference: RO:0002338
has_obo_namespace: external
id: has_target_start_location
shorthand: has_target_start_location

has target end location
database_cross_reference: RO:0002339
has_obo_namespace: external
id: has_target_end_location
shorthand: has_target_end_location

results in transport along
database_cross_reference: RO:0002341
has_obo_namespace: external
id: results_in_transport_along
shorthand: results_in_transport_along

results in transport across
database_cross_reference: RO:0002342
has_obo_namespace: external
id: results_in_transport_across
shorthand: results_in_transport_across

results in growth of
database_cross_reference: RO:0002343
has_obo_namespace: external
id: results_in_growth_of
shorthand: results_in_growth_of

results in transport to from or in
database_cross_reference: RO:0002344
has_obo_namespace: external
id: results_in_transport_to_from_or_in
shorthand: results_in_transport_to_from_or_in

results in commitment to
database_cross_reference: RO:0002348
has_obo_namespace: external
id: results_in_commitment_to
shorthand: results_in_commitment_to

results in determination of
database_cross_reference: RO:0002349
has_obo_namespace: external
id: results_in_determination_of
shorthand: results_in_determination_of

output of
database_cross_reference: RO:0002353
has_obo_namespace: external
id: output_of
shorthand: output_of

results in structural organization of
database_cross_reference: RO:0002355
has_obo_namespace: external
id: results_in_structural_organization_of
shorthand: results_in_structural_organization_of

results in specification of
database_cross_reference: RO:0002356
has_obo_namespace: external
id: results_in_specification_of
shorthand: results_in_specification_of

causally downstream of
database_cross_reference: RO:0002404
has_obo_namespace: external
id: causally_downstream_of
shorthand: causally_downstream_of

immediately causally downstream of
database_cross_reference: RO:0002405
has_obo_namespace: external
id: immediately_causally_downstream_of
shorthand: immediately_causally_downstream_of

causally upstream of
database_cross_reference: RO:0002411
has_obo_namespace: external
id: causally_upstream_of
shorthand: causally_upstream_of

immediately causally upstream of
database_cross_reference: RO:0002412
has_obo_namespace: external
id: immediately_causally_upstream_of
shorthand: immediately_causally_upstream_of

causally upstream of or within
database_cross_reference: RO:0002418
has_obo_namespace: external
id: causally_upstream_of_or_within
shorthand: causally_upstream_of_or_within

causally downstream of or within
database_cross_reference: RO:0002427
has_obo_namespace: external
id: causally_downstream_of_or_within
shorthand: causally_downstream_of_or_within

has intermediate
database_cross_reference: RO:0002505
has_obo_namespace: external
id: has_intermediate
shorthand: has_intermediate

results in movement of
database_cross_reference: RO:0002565
has_obo_namespace: external
id: results_in_movement_of
shorthand: results_in_movement_of

directly regulates
database_cross_reference: RO:0002578
has_obo_namespace: external
id: directly_regulates
shorthand: directly_regulates

results in assembly of
database_cross_reference: RO:0002588
has_obo_namespace: external
id: results_in_assembly_of
shorthand: results_in_assembly_of

results in disassembly of
database_cross_reference: RO:0002590
has_obo_namespace: external
id: results_in_disassembly_of
shorthand: results_in_disassembly_of

results in remodeling of
database_cross_reference: RO:0002591
has_obo_namespace: external
id: results_in_remodeling_of
shorthand: results_in_remodeling_of

results in organization of
database_cross_reference: RO:0002592
has_obo_namespace: external
id: results_in_organization_of
shorthand: results_in_organization_of

process has causal agent
database_cross_reference: RO:0002608
has_obo_namespace: external
id: process_has_causal_agent
shorthand: process_has_causal_agent

directly positively regulates
database_cross_reference: RO:0002629
has_obo_namespace: external
id: directly_positively_regulates
shorthand: directly_positively_regulates

directly negatively regulates
database_cross_reference: RO:0002630
has_obo_namespace: external
id: directly_negatively_regulates
shorthand: directly_negatively_regulates

produces
database_cross_reference: RO:0003000
has_obo_namespace: external
id: produces
shorthand: produces

produced by
database_cross_reference: RO:0003001
has_obo_namespace: external
id: produced_by
shorthand: produced_by

has primary input or output
database_cross_reference: RO:0004007
has_obo_namespace: external
id: has_primary_input_or_output
shorthand: has_primary_input_or_output

has primary output
database_cross_reference: RO:0004008
has_obo_namespace: external
id: has_primary_output
shorthand: has_primary_output

has primary input
database_cross_reference: RO:0004009
has_obo_namespace: external
id: has_primary_input
shorthand: has_primary_input

has small molecule activator
database_cross_reference: RO:0012001
has_obo_namespace: external
id: has_small_molecule_activator
shorthand: has_small_molecule_activator

acts on population of
database_cross_reference: RO:0012003
has_obo_namespace: external
id: acts_on_population_of
shorthand: acts_on_population_of

results in fusion of
database_cross_reference: RO:0012008
has_obo_namespace: external
id: results_in_fusion_of
shorthand: results_in_fusion_of

regulates characteristic
database_cross_reference: RO:0019000
has_obo_namespace: gene_ontology
id: regulates_characteristic
shorthand: regulates_characteristic

positively regulates characteristic
database_cross_reference: RO:0019001
has_obo_namespace: gene_ontology
id: positively_regulates_characteristic
shorthand: positively_regulates_characteristic

negatively regulates characteristic
database_cross_reference: RO:0019002
has_obo_namespace: gene_ontology
id: negatively_regulates_characteristic
shorthand: negatively_regulates_characteristic

results in changes to anatomical or cellular structure
database_cross_reference: RO:0040036
has_obo_namespace: external
id: results_in_changes_to_anatomical_or_cellular_structure
shorthand: results_in_changes_to_anatomical_or_cellular_structure