# GORULE violations assigned by CAFA

## SUMMARY

This report generated on 2024-01-29

## Contents

[gorule-0000008](#gorule-0000008)[No annotations should be made to uninformative high level terms]{}

[gorule-0000046](#gorule-0000046)[The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.]{}

[gorule-0000061](#gorule-0000061)[Allowed gene product to term relations (gp2term)]{}

## MESSAGES

###gorule-0000008

No annotations should be made to uninformative high level terms

* total: 10
#### Messages
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:88256	Camk2a	involved_in	GO:0018105	MGI:MGI:5882895|PMID:15994560	IDA		P	calcium/calmodulin-dependent protein kinase II alpha	alpha-CaMKII	protein_coding_gene	taxon:10090	20160919	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:97592	Prkaca	involved_in	GO:0018105	MGI:MGI:5882918|PMID:9688563	IMP		P	protein kinase, cAMP dependent, catalytic, alpha	C alpha|Cs|PKA|Pkaca	protein_coding_gene	taxon:10090	20160915	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:97592	Prkaca	involved_in	GO:0018105	MGI:MGI:5882920|PMID:9413984	IDA		P	protein kinase, cAMP dependent, catalytic, alpha	C alpha|Cs|PKA|Pkaca	protein_coding_gene	taxon:10090	20160921	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:97595	Prkca	involved_in	GO:0010360	MGI:MGI:5882922|PMID:7828597	IMP		P	protein kinase C, alpha	Pkca	protein_coding_gene	taxon:10090	20170123	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:97798	Ptgs2	involved_in	GO:0043154	MGI:MGI:5474549|PMID:21716255	IMP		P	prostaglandin-endoperoxide synthase 2	Cox-2|COX2|cyclooxygenase 2|cyclooxygenase-2|Pghs2|PGHS-2|PHS-2|prostaglandin G/H synthase|Tis10	protein_coding_gene	taxon:10090	20161108	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:1350917	Rps3	involved_in	GO:0051092	MGI:MGI:5882887|PMID:18045535	IMP		P	ribosomal protein S3	D7Ertd795e	protein_coding_gene	taxon:10090	20160512	CAFA	has_input(GO:0035525)	
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:1913771	Rwdd1	involved_in	GO:2000825	MGI:MGI:5882884|PMID:18761815	IMP		P	RWD domain containing 1	2610002D06Rik|2700069A07Rik	protein_coding_gene	taxon:10090	20161115	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`WB	WBGene00002191	kin-3	involved_in	GO:0018105	WB_REF:WBPaper00051123|PMID:1304892	IDA		P		B0205.7|casein kinase II|CKIIalpha	gene	taxon:6239	20160919	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB	Q8N726	CDKN2A	involved_in	GO:1904667	PMID:18560357	IDA		P	Tumor suppressor ARF	CDKN2A|CDKN2|MLM	protein	taxon:9606	20170124	CAFA		UniProtKB:Q8N726
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB	Q5ZLC9	GOLGA7	involved_in	GO:0018230	GO_REF:0000024	ISS	UniProtKB:Q7Z5G4	P	Golgin subfamily A member 7	GOLGA7|RCJMB04_6k22	protein	taxon:9031	20131211	CAFA		
`

###gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 3
#### Messages
* WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI	MGI:88005	Amelx	enables	GO:0042803	MGI:MGI:5882882|PMID:19086270	IDA		F	amelogenin, X-linked	Amel|Amg|M100888|Rgsc888	protein_coding_gene	taxon:10090	20161125	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI	MGI:98181	Rrm2	enables	GO:0042803	MGI:MGI:5882921|PMID:8876648	IDA		F	ribonucleotide reductase M2	R2	protein_coding_gene	taxon:10090	20161103	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI	MGI:1915928	Smtnl1	enables	GO:0043621	MGI:MGI:5882874|PMID:22424482	IDA		F	smoothelin-like 1	1110030K22Rik|Chasm	protein_coding_gene	taxon:10090	20161014	CAFA		
`

###gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 2
#### Messages
* WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI	MGI:1197015	Daxx	colocalizes_with	GO:0000792	MGI:MGI:5882889|PMID:17081986	IDA		C	Fas death domain-associated protein		protein_coding_gene	taxon:10090	20161116	CAFA		
`
* WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI	MGI:104662	Pml	colocalizes_with	GO:0000792	MGI:MGI:5882889|PMID:17081986	IDA		C	promyelocytic leukemia	1200009E24Rik|Trim19	protein_coding_gene	taxon:10090	20161116	CAFA		
`