# Group: goa - Dataset: goa_chicken_complex

## SUMMARY

This report generated on 2024-01-29

  * Associations: 103
  * Lines in file (incl headers): 112
  * Lines skipped: 0
## Header From Original Association File

> !gaf-version: 2.2  
> !  
> !Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in  
> !ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz  
> !  
> !date-generated: 2023-12-04 08:35  
> !generated-by: UniProt  
> !go-version: http://purl.obolibrary.org/obo/go/releases/2023-11-06/extensions/go-plus.owl  
> !  

## Contents

[gorule-0000002](#gorule-0000002)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000026](#gorule-0000026)

[gorule-0000028](#gorule-0000028)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000057](#gorule-0000057)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[other](#other)


## MESSAGES

### gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

* total: 0
### gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

* total: 0
### gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

* total: 0
### gorule-0000008

No annotations should be made to uninformative high level terms

* total: 0
### gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

* total: 0
### gorule-0000013

Taxon-appropriate annotation check

* total: 0
### gorule-0000015

Dual species taxon check

* total: 0
### gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 0
### gorule-0000017

IDA annotations must not have a With/From entry

* total: 0
### gorule-0000018

IPI annotations require a With/From entry

* total: 0
### gorule-0000026

IBA annotations must have been sourced from the PAINT inference pipeline

* total: 0
### gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

* total: 0
### gorule-0000029

IEAs should be less than one year old.

* total: 0
### gorule-0000030

Obsolete GO_REFs are not allowed

* total: 0
### gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

* total: 0
### gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

* total: 0
### gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

* total: 0
### gorule-0000043

Check for valid combination of evidence code and GO_REF

* total: 0
### gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 0
### gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

* total: 0
### gorule-0000055

References should have only one ID per ID space

* total: 0
### gorule-0000057

Group specific filter rules should be applied to annotations

* total: 0
### gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

* total: 0
### gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 3
#### Messages
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `ComplexPortal	CPX-7404	tenascin-c_chick	part_of	GO:0005604	GO_REF:0000114	ISO	ComplexPortal:CPX-471	C	Tenascin-C complex	TNC hexamer|Cytotactin complex|Hexabrachion complex	protein_complex	taxon:9031	20220715	ComplexPortal		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `ComplexPortal	CPX-7404	tenascin-c_chick	part_of	GO:0062023	GO_REF:0000114	ISO	ComplexPortal:CPX-466	C	Tenascin-C complex	TNC hexamer|Cytotactin complex|Hexabrachion complex	protein_complex	taxon:9031	20220715	ComplexPortal		
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `ComplexPortal	CPX-960	collagen_ii_chick	part_of	GO:0031012	PMID:26059120	EXP		C	Collagen type II trimer	Type II collagen|COL1A2 trimer	protein_complex	taxon:9031	20170526	ComplexPortal		
`
### other

* total: 0