# Group: unknown - Dataset: unknown

## SUMMARY

This report generated on 2024-01-29

  * Associations: 573
  * Lines in file (incl headers): 603
  * Lines skipped: 27
## Header From Original Association File

> !gpa-version: 1.1  
> !collation date: 2024-01-26  
> !collated from production models in https://github.com/geneontology/noctua-models/ where col1 matches xenbase; special rules for MGI (https://github.com/geneontology/pipeline/issues/313)  

## Contents

[gorule-0000001](#gorule-0000001)

[gorule-0000002](#gorule-0000002)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000020](#gorule-0000020)

[gorule-0000026](#gorule-0000026)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000057](#gorule-0000057)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[other](#other)


## MESSAGES

### gorule-0000001

* total: 22
#### Messages
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17252259) -- `Xenbase	XB-GENE-6252724	acts_upstream_of_or_within	GO:0061351	PMID:25818835	ECO:0006051	Xenbase: XB-MORPHOLINO-17252259		20181026	Xenbase	occurs_in(UBERON:0001945)	model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5a7e68a100000157`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17311472) -- `Xenbase	XB-GENE-864923	acts_upstream_of_or_within	GO:0003401	PMID:17112317	ECO:0006051	Xenbase: XB-MORPHOLINO-17311472		20180328	Xenbase		model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5a7e68a100000655`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-22249165) -- `Xenbase	XB-GENE-6486172	involved_in	GO:0120030	PMID:32482850	ECO:0007089	Xenbase: XB-MORPHOLINO-22249165		20200618	Xenbase		model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:5ee8120100000340`
* ERROR - Invalid symbol: Problem parsing With/From column (XENBASE:XB-MORPHOLINO-22194217; XENBASE:XB-MORPHOLINO-22194218) -- `Xenbase	XB-GENE-5937936	acts_upstream_of_or_within	GO:0009952	PMID:31934854	ECO:0006051	XENBASE:XB-MORPHOLINO-22194217; XENBASE:XB-MORPHOLINO-22194218		20200731	Xenbase		noctua-model-id=gomodel:5ee8120100001217|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (XENBASE:XB-MORPHOLINO-22194217; XENBASE:XB-MORPHOLINO-22194218) -- `Xenbase	XB-GENE-5937936	acts_upstream_of_or_within	GO:0030178	PMID:31934854	ECO:0006051	XENBASE:XB-MORPHOLINO-22194217; XENBASE:XB-MORPHOLINO-22194218		20200731	Xenbase		noctua-model-id=gomodel:5ee8120100001217|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-23619045) -- `Xenbase	XB-GENE-6041676	acts_upstream_of_or_within_positive_effect	GO:0001843	PMID:33230114	ECO:0006051	XB-MORPHOLINO-23619045		20210112	Xenbase		model-state=production|noctua-model-id=gomodel:5fce9b7300000409|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-23619045) -- `Xenbase	XB-GENE-6041676	acts_upstream_of_or_within_positive_effect	GO:0060322	PMID:33230114	ECO:0006051	XB-MORPHOLINO-23619045		20210112	Xenbase		model-state=production|noctua-model-id=gomodel:5fce9b7300000409|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-22064339) -- `Xenbase	XB-GENE-866134	acts_upstream_of_or_within	GO:0048730	PMID:30935896	ECO:0006051	XB-MORPHOLINO-22064339		20210310	Xenbase		model-state=production|noctua-model-id=gomodel:60418ffa00000241|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-22064338) -- `Xenbase	XB-GENE-866134	acts_upstream_of_or_within	GO:0048730	PMID:30935896	ECO:0006051	XB-MORPHOLINO-22064338		20210310	Xenbase		model-state=production|noctua-model-id=gomodel:60418ffa00000241|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-LINE-1914) -- `Xenbase	XB-GENE-6257957	acts_upstream_of_or_within	GO:0060045	PMID:34188056	ECO:0001266	Xenbase: XB-LINE-1914		20220214	Xenbase	part_of(GO:0061026)	model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:60ff660000001456`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-17249589) -- `Xenbase	XB-GENE-865411	acts_upstream_of_or_within	GO:0035777	PMID:21059920	ECO:0000315	XB-MORPHOLINO-17249589		20211008	Xenbase		noctua-model-id=gomodel:614fa6f900001395|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (XB-MORPHOLINO-17249589) -- `Xenbase	XB-GENE-865411	acts_upstream_of_or_within	GO:0035776	PMID:21059920	ECO:0000315	XB-MORPHOLINO-17249589		20211008	Xenbase		noctua-model-id=gomodel:614fa6f900001395|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-23659076) -- `Xenbase	XB-GENE-922501	acts_upstream_of_or_within	GO:0001840	PMID:34146908	ECO:0006051	Xenbase: XB-MORPHOLINO-23659076		20211202	Xenbase		model-state=production|noctua-model-id=gomodel:6197061700002503|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-23659074) -- `Xenbase	XB-GENE-6041600	acts_upstream_of_or_within	GO:0001840	PMID:34146908	ECO:0006051	Xenbase: XB-MORPHOLINO-23659074		20211202	Xenbase		model-state=production|noctua-model-id=gomodel:6197061700002503|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-23659075) -- `Xenbase	XB-GENE-5861130	acts_upstream_of_or_within	GO:0001840	PMID:34146908	ECO:0006051	Xenbase: XB-MORPHOLINO-23659075		20211202	Xenbase		model-state=production|noctua-model-id=gomodel:6197061700002503|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (xenbase: XB-MORPHOLINO-25874511) -- `Xenbase	XB-GENE-17340314	acts_upstream_of_or_within	GO:0030878	PMID:34946811	ECO:0006051	xenbase: XB-MORPHOLINO-25874511		20220103	Xenbase		model-state=production|noctua-model-id=gomodel:61bcf0b700000321|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (XENBASE:) -- `Xenbase	XB-GENE-486855	acts_upstream_of	GO:0030324	PMID:30352852	ECO:0006051	XENBASE:		20220214	Xenbase	has_input(Xenbase:XB-GENE-486595),has_input(Xenbase:XB-GENE-960148)	noctua-model-id=gomodel:6205c24300000508|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (XENBASE:) -- `Xenbase	XB-GENE-486855	acts_upstream_of_positive_effect	GO:0003306	PMID:30352852	ECO:0006051	XENBASE:		20220214	Xenbase		noctua-model-id=gomodel:6205c24300000508|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17250540) -- `Xenbase	XB-GENE-1017281	acts_upstream_of_or_within	GO:0048570	PMID:19675128	ECO:0006051	Xenbase: XB-MORPHOLINO-17250540		20220222	Xenbase		noctua-model-id=gomodel:6205c24300001652|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17250540) -- `Xenbase	XB-GENE-1017281	involved_in	GO:0009950	PMID:19675128	ECO:0006051	Xenbase: XB-MORPHOLINO-17250540		20220222	Xenbase		noctua-model-id=gomodel:6205c24300001652|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17250540) -- `Xenbase	XB-GENE-1017281	acts_upstream_of_positive_effect	GO:0016325	PMID:19675128	ECO:0006093	Xenbase: XB-MORPHOLINO-17250540		20220222	Xenbase		noctua-model-id=gomodel:6205c24300001652|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
* ERROR - Invalid symbol: Problem parsing With/From column (Xenbase: XB-MORPHOLINO-17250540) -- `Xenbase	XB-GENE-1017281	acts_upstream_of_or_within	GO:0061053	PMID:19675128	ECO:0006051	Xenbase: XB-MORPHOLINO-17250540		20220222	Xenbase		noctua-model-id=gomodel:6205c24300001652|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588`
### gorule-0000002

* total: 0
### gorule-0000006

* total: 0
### gorule-0000007

* total: 0
### gorule-0000008

* total: 10
#### Messages
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-17340943	acts_upstream_of_or_within	GO:0007258	PMID:16026968	ECO:0006063			20181026	Xenbase		noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-483735	acts_upstream_of_or_within	GO:0007258	PMID:16026968	ECO:0006063			20190411	Xenbase		noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-5931269	acts_upstream_of_or_within	GO:0008219	PMID:17112317	ECO:0006051	Xenbase:XB-MORPHOLINO-17311316		20180403	Xenbase		model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5a7e68a100001125
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-5931269	acts_upstream_of_or_within	GO:0008219	PMID:17112317	ECO:0006051	Xenbase:XB-MORPHOLINO-17311333		20180403	Xenbase		model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5a7e68a100001125
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-5936231	acts_upstream_of_or_within_negative_effect	GO:0008219	PMID:14745953	ECO:0006051	Xenbase:XB-MORPHOLINO-17249332		20190115	Xenbase		noctua-model-id=gomodel:5b91dbd100001027|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-6255524	acts_upstream_of_or_within	GO:0002775	PMID:30692997	ECO:0000304			20201104	Xenbase	occurs_in(XAO:0005023)	noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-6252596	acts_upstream_of_or_within	GO:0002775	PMID:30692997	ECO:0000304			20201104	Xenbase	occurs_in(XAO:0005023)	noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-6253058	acts_upstream_of_or_within	GO:0002775	PMID:30692997	ECO:0000304			20201104	Xenbase	occurs_in(XAO:0005023)	noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-6254459	acts_upstream_of_or_within	GO:0002775	PMID:30692997	ECO:0000304			20201104	Xenbase	occurs_in(XAO:0005023)	noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `Xenbase	XB-GENE-919827	acts_upstream_of_or_within	GO:0048856	PMID:32196547	ECO:0000315			20220118	Xenbase	results_in_development_of(XAO:0003029)	model-state=production|noctua-model-id=gomodel:61e0e55600000483|contributor=https://orcid.org/0000-0003-1074-8103
`
### gorule-0000011

* total: 0
### gorule-0000013

* total: 0
### gorule-0000015

* total: 0
### gorule-0000016

* total: 0
### gorule-0000017

* total: 0
### gorule-0000018

* total: 0
### gorule-0000020

* total: 4
#### Messages
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0038031) -- `Xenbase	XB-GENE-5919104	acts_upstream_of_or_within	GO:0038031	PMID:26754771	ECO:0000315	XENBASE:XB-MORPHOLINO-18374219		20210402	Xenbase		noctua-model-id=gomodel:60418ffa00002271|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0038031) -- `Xenbase	XB-GENE-5919104	acts_upstream_of_or_within	GO:0038031	PMID:26754771	ECO:0000315	XENBASE:XB-MORPHOLINO-18374220		20210402	Xenbase		noctua-model-id=gomodel:60418ffa00002271|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0031226) -- `Xenbase	XB-GENE-22169574	part_of	GO:0031226	PMID:31644900	ECO:0005804			20200415	Xenbase		noctua-model-id=gomodel:5e72450500001671|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0031226) -- `Xenbase	XB-GENE-22169574	part_of	GO:0031226	PMID:31644900	ECO:0001175			20200415	Xenbase		noctua-model-id=gomodel:5e72450500001671|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
### gorule-0000026

* total: 3
#### Messages
* ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources -- `Xenbase	XB-GENE-5937936	enables	GO:0061630	PMID:31934854	ECO:0000318			20200731	Xenbase		noctua-model-id=gomodel:5ee8120100001217|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
`
* ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources -- `Xenbase	XB-GENE-1008531	enables	GO:0019198	PMID:31934854	ECO:0000318			20200724	Xenbase		noctua-model-id=gomodel:5ee8120100001217|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
`
* ERROR - Violates GO Rule: GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources -- `Xenbase	XB-GENE-487854	is_active_in	GO:0005886	GO_REF:0000024	ECO:0000318	UniProtKBb:P55087		20201119	Xenbase		noctua-model-id=gomodel:5fadbcf000001421|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
### gorule-0000029

* total: 0
### gorule-0000030

* total: 0
### gorule-0000037

* total: 0
### gorule-0000039

* total: 0
### gorule-0000042

* total: 0
### gorule-0000043

* total: 0
### gorule-0000046

* total: 0
### gorule-0000050

* total: 0
### gorule-0000055

* total: 0
### gorule-0000057

* total: 0
### gorule-0000058

* total: 0
### gorule-0000061

* total: 5
#### Messages
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `Xenbase	XB-GENE-22169574	part_of	GO:0031226	PMID:31644900	ECO:0005804			20200415	Xenbase		noctua-model-id=gomodel:5e72450500001671|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `Xenbase	XB-GENE-22169574	part_of	GO:0031226	PMID:31644900	ECO:0001175			20200415	Xenbase		noctua-model-id=gomodel:5e72450500001671|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `Xenbase	XB-GENE-982709	part_of	GO:0005770	PMID:30612743	ECO:0007719			20200619	Xenbase		model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- `Xenbase	XB-GENE-6486172	part_of	GO:0036064	PMID:32482850	ECO:0005804			20200618	Xenbase	part_of(XAO:0005179)	model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:5ee8120100000340
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050 -- `Xenbase	XB-GENE-5782073	is_active_in	GO:0000785	PMID:31936777	ECO:0000266			20210909	Xenbase		noctua-model-id=gomodel:61283a3000000756|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
`
### other

* total: 0