# GORULE violations assigned by SynGO

## SUMMARY

This report generated on 2024-01-05

## Contents

[gorule-0000006](#gorule-0000006)[IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC]{}

[gorule-0000008](#gorule-0000008)[No annotations should be made to uninformative high level terms]{}

[gorule-0000013](#gorule-0000013)[Taxon-appropriate annotation check]{}

[gorule-0000016](#gorule-0000016)[With/From: IC annotations require a With/From GO ID]{}

## MESSAGES

###gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

* total: 5
#### Messages
* ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB	P51790	CLCN3	is_active_in	GO:0030672	PMID:11182090	IEP		C	H(+)/Cl(-) exchange transporter 3	CLCN3	protein	taxon:9606	20220928	SynGO	part_of(GO:0098978),part_of(UBERON:0000955)	UniProtKB:P51790-1
`
* ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB	P51790	CLCN3	is_active_in	GO:0030672	PMID:11182090	IEP		C	H(+)/Cl(-) exchange transporter 3	CLCN3	protein	taxon:9606	20220928	SynGO	part_of(GO:0098982),part_of(UBERON:0000955)	UniProtKB:P51790-1
`
* ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB	P51790	CLCN3	is_active_in	GO:0030672	PMID:11182090	IEP		C	H(+)/Cl(-) exchange transporter 3	CLCN3	protein	taxon:9606	20220928	SynGO	part_of(UBERON:0002421)	UniProtKB:P51790-1
`
* ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB	P51790	CLCN3	is_active_in	GO:0098978	PMID:11182090	IEP		C	H(+)/Cl(-) exchange transporter 3	CLCN3	protein	taxon:9606	20220928	SynGO	part_of(UBERON:0000955)	UniProtKB:P51790-1
`
* ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB	P51790	CLCN3	is_active_in	GO:0098982	PMID:11182090	IEP		C	H(+)/Cl(-) exchange transporter 3	CLCN3	protein	taxon:9606	20220928	SynGO	part_of(UBERON:0000955)	UniProtKB:P51790-1
`

###gorule-0000008

No annotations should be made to uninformative high level terms

* total: 3
#### Messages
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:1316660	Cacng2	involved_in	GO:2000311	MGI:MGI:5887196|PMID:15758178	IDA		P	calcium channel, voltage-dependent, gamma subunit 2	B230105C07Rik|B930041E13Rik|stargazin|TARP gamma 2	protein_coding_gene	taxon:10090	20170324	SynGO		
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:1919805	Shisa9	involved_in	GO:0098962	MGI:MGI:4440391|PMID:20185686	IC	GO:0045211,GO:2000311	P	shisa family member 9	2700045P11Rik|CKAMP44	protein_coding_gene	taxon:10090	20160615	SynGO	occurs_in(GO:0098794),occurs_in(GO:0060076),has_input(GO:0032281)	
`
* WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI	MGI:1919805	Shisa9	involved_in	GO:2000311	MGI:MGI:4440391|PMID:20185686	IDA		P	shisa family member 9	2700045P11Rik|CKAMP44	protein_coding_gene	taxon:10090	20160603	SynGO		
`

###gorule-0000013

Taxon-appropriate annotation check

* total: 2
#### Messages
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	O73706	CACNA1B	is_active_in	GO:0044305	PMID:7993621	EXP		C	Voltage-dependent N-type calcium channel subunit alpha-1B	CACNA1B	protein	taxon:9031	20220928	SynGO		
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	O73706	CACNA1B	is_active_in	GO:0044305	PMID:7993621	IDA		C	Voltage-dependent N-type calcium channel subunit alpha-1B	CACNA1B	protein	taxon:9031	20220928	SynGO		
`

###gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 1
#### Messages
* WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`MGI	MGI:95808	Gria1	located_in	GO:0098839	MGI:MGI:3615715|PMID:14555717	IC	GO:0098839	C	glutamate receptor, ionotropic, AMPA1 (alpha 1)	2900051M01Rik|Glr1|Glr-1|GluA1|Glur1|Glur-1|GluR1|GluRA|GluR-A|HIPA1	protein_coding_gene	taxon:10090	20161125	SynGO	part_of(GO:0060076),part_of(CL:1001571),part_of(EMAPA:32768)	
`