# GORULE violations assigned by TIGR

## SUMMARY

This report generated on 2026-05-21

## Contents

[gorule-0000020](#gorule-0000020)[Automatic repair of annotations to merged or obsoleted terms]{}

[gorule-0000065](#gorule-0000065)[Annotations to term that are candidates for obsoletion should be produce a warning]{}

## MESSAGES

###gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 1
#### Messages
* WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`AGI_LocusCode	AT1G74470	CHLP	enables	GO:0045550	PMID:9492312	IDA		F	Geranylgeranyl diphosphate reductase, chloroplastic	At1g74470|CHLP|F1M20.15	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT1G74470
`

###gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

* total: 5
#### Messages
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`AGI_LocusCode	AT2G39550	GGB	acts_upstream_of_or_within	GO:0018344	PMID:11500541	IDA		P	Geranylgeranyl transferase type-1 subunit beta	At2g39550|F12L6|GGB|PGGT1B|PGGTI	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT2G39550
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`AGI_LocusCode	AT3G05840	ASK3	acts_upstream_of_or_within	GO:0016310	PMID:7509023	IDA		P	Shaggy-related protein kinase gamma	ASK3|At3g05840|F10A16.14|SK12	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT3G05840
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`AGI_LocusCode	AT4G26080	ABI1	acts_upstream_of_or_within	GO:0006470	PMID:9869399	TAS		P	Protein phosphatase 2C 56	ABI1|At4g26080|F20B18.190	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT4G26080
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`AGI_LocusCode	AT5G26751	ASK1	acts_upstream_of_or_within	GO:0016310	PMID:7509023	IDA		P	Shaggy-related protein kinase alpha	ASK1|At5g26751|F2P16.21|SK11	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT5G26751
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`AGI_LocusCode	AT5G57050	ABI2	acts_upstream_of_or_within	GO:0006470	PMID:9869399	TAS		P	Protein phosphatase 2C 77	ABI2|At5g57050|MHM17.19|PP2C77	protein	NCBITaxon:3702	20030417	TIGR		AGI_LocusCode:AT5G57050
`