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                "line": "RGD\t69437\tinvolved_in\tGO:0097113\tPMID:10027300\tECO:0000353\t\t\t20250801\tRGD\t\tnoctua-model-id=gomodel:6882d2b800001808|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t621667\tenables\tGO:0035255\tPMID:23460828\tECO:0000353\t\t\t20250801\tRGD\thas_input(RGD:61862)\tnoctua-model-id=gomodel:6882d2b800001808|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t620760\tenables\tGO:0051117\tPMID:20802490\tECO:0000353\t\t\t20250801\tRGD\tpart_of(GO:0002092),has_input(RGD:621594),directly_positively_regulates(GO:0035255)\tnoctua-model-id=gomodel:6882d2b800001808|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t708573\tenables\tGO:0005515\tPMID:30893606\tECO:0000353\t\t\t20260123\tRGD\tpart_of(GO:0099011),has_input(RGD:619722),directly_negatively_regulates(GO:0044877)\tnoctua-model-id=gomodel:69729a3800000567|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t3728\tenables\tGO:0044877\tPMID:30893606\tECO:0000353\t\t\t20260123\tRGD\t\tnoctua-model-id=gomodel:69729a3800000567|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t619722\tenables\tGO:0044877\tpmid:26030875\tECO:0000353\t\t\t20260123\tRGD\tpart_of(GO:0035543),has_input(RGD:69430)\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:69729a3800000783\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            },
            {
                "level": "WARNING",
                "line": "RGD\t3785\tenables\tGO:0017075\tpmid:26030875\tECO:0000353\t\t\t20260123\tRGD\tpart_of(GO:0035493)\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:69729a3800000783\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000018: IPI annotations require a With/From entry",
                "obj": "",
                "taxon": "",
                "rule": 18
            }
        ],
        "gorule-0000022": [],
        "gorule-0000026": [
            {
                "level": "ERROR",
                "line": "RGD\t628688\tenables\tGO:0003756\tGO_REF:0000033\tECO:0000318\tPANTHER:PTN000432607\t\t20180716\tWB\t\tmodel-state=production|noctua-model-id=gomodel:5b318d0900000296|contributor=https://orcid.org/0000-0002-3013-9906\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000026: IBA evidence codes should be filtered from main MOD gaf sources",
                "obj": "",
                "taxon": "",
                "rule": 26
            }
        ],
        "gorule-0000029": [],
        "gorule-0000030": [],
        "gorule-0000037": [],
        "gorule-0000039": [],
        "gorule-0000042": [],
        "gorule-0000043": [],
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            {
                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms",
                "obj": "",
                "taxon": "",
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            },
            {
                "level": "WARNING",
                "line": "RGD\t3802\tinvolved_in\tGO:0051260\tpmid:12181340\tECO:0001183\t\t\t20250611\tRGD\t\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:682fbcd000006614\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms",
                "obj": "",
                "taxon": "",
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            },
            {
                "level": "WARNING",
                "line": "RGD\t69437\tinvolved_in\tGO:0051260\tPMID:11466413\tECO:0000315\t\t\t20250731\tRGD\t\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:6882d2b800001534\n",
                "type": "Violates GO Rule",
                "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms",
                "obj": "",
                "taxon": "",
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            }
        ],
        "gorule-0000050": [],
        "gorule-0000055": [],
        "gorule-0000058": [],
        "gorule-0000061": [
            {
                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002327, RO:0002326. Repaired to RO:0002327",
                "obj": "",
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            {
                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of RO:0004033, RO:0002263, RO:0002331, RO:0004035, RO:0002264, RO:0004034, RO:0004032. Repaired to RO:0002264",
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            {
                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of RO:0004033, RO:0002263, RO:0002331, RO:0004035, RO:0002264, RO:0004034, RO:0004032. Repaired to RO:0002264",
                "obj": "",
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        ],
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        "gorule-0000065": [
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                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed",
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            {
                "level": "WARNING",
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                "type": "Violates GO Rule",
                "message": "GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed",
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        ],
        "gorule-0000013": [],
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                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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                "message": "Violates GORULE:0000020",
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                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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                "type": "Obsolete class with no replacement",
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                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
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            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:0098962",
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            {
                "level": "ERROR",
                "line": "RGD\t1304930\tinvolved_in\tGO:0098962\tPMID:24853943\tECO:0006052\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tnoctua-model-id=gomodel:SYNGO_2187|contributor=https://orcid.org/0000-0001-9783-5183|model-state=production|contributor=https://orcid.org/0000-0002-5676-366X\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:0098962",
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            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:0098962",
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            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:0098962",
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            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:0098962",
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            {
                "level": "ERROR",
                "line": "RGD\t621125\tenables\tGO:0008480\tPMID:2417560\tECO:0000314\t\t\t20260108\tRGD\tpart_of(GO:1901053),has_input(CHEBI:15611),has_output(CHEBI:15428)\tnoctua-model-id=gomodel:6918f23700005081|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901053",
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            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901053",
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            },
            {
                "level": "ERROR",
                "line": "RGD\t2719\tinvolved_in\tGO:1901054\tPMID:18501206\tECO:0000315\t\t\t20251211\tRGD\t\tnoctua-model-id=gomodel:6918f23700005081|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
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            },
            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
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            },
            {
                "level": "ERROR",
                "line": "RGD\t620453\tinvolved_in\tGO:1901054\tPMID:6159630\tECO:0000314\t\t\t20260108\tRGD\t\tnoctua-model-id=gomodel:6918f23700005081|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
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            },
            {
                "level": "ERROR",
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                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
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            },
            {
                "level": "ERROR",
                "line": "RGD\t2719\tenables\tGO:0017174\tPMID:18501206\tECO:0000315\t\t\t20260106\tRGD\tpart_of(GO:1901054),has_input(CHEBI:15414),has_input(CHEBI:15428),has_output(CHEBI:15611),has_output(CHEBI:16680)\tnoctua-model-id=gomodel:693b3c0900005618|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
                "taxon": "",
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            },
            {
                "level": "ERROR",
                "line": "RGD\t2719\tinvolved_in\tGO:1901054\tPMID:18501206\tECO:0000315\t\t\t20260106\tRGD\t\tnoctua-model-id=gomodel:693b3c0900005618|model-state=production|contributor=https://orcid.org/0000-0001-5256-8683\n",
                "type": "Obsolete class with no replacement",
                "message": "Violates GORULE:0000020",
                "obj": "GO:1901054",
                "taxon": "",
                "rule": 20
            },
            {
                "level": "WARNING",
                "line": "RGD\t3802\tenables\tGO:0140597\tPMID:14528015\tECO:0000315\t\t\t20260205\tRGD\tpart_of(GO:0016080),occurs_in(GO:0030672)\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:682fbcd000006614\n",
                "type": "Obsolete class",
                "message": "Violates GORULE:0000020, but was repaired",
                "obj": "GO:0016080",
                "taxon": "",
                "rule": 20
            },
            {
                "level": "WARNING",
                "line": "RGD\t3802\tinvolved_in\tGO:0016080\tPMID:14528015\tECO:0000315\t\t\t20260204\tRGD\t\tmodel-state=production|contributor=https://orcid.org/0000-0001-5256-8683|noctua-model-id=gomodel:682fbcd000006614\n",
                "type": "Obsolete class",
                "message": "Violates GORULE:0000020, but was repaired",
                "obj": "GO:0016080",
                "taxon": "",
                "rule": 20
            }
        ],
        "gorule-0000001": [
            {
                "level": "ERROR",
                "line": "RGD\t620518\tinvolved_in\tGO:0099502\tPMID:22036572\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tmodel-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1398\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t620518\tis_active_in\tGO:0098978\tPMID:22036572\tECO:0000005\t\t\t20240306\tSynGO\tpart_of(UBERON:0002421)\tmodel-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1398\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t620519\tinvolved_in\tGO:0099502\tPMID:22036572\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tmodel-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1399\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t620519\tis_active_in\tGO:0098978\tPMID:22036572\tECO:0000005\t\t\t20240306\tSynGO\tpart_of(UBERON:0002421)\tmodel-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_1399\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t69313\tis_active_in\tGO:0031594\tPMID:26820598\tECO:0000005\t\t\t20240306\tSynGO\t\tnoctua-model-id=gomodel:SYNGO_2109|contributor=https://orcid.org/0000-0002-4973-5732|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t3728\tis_active_in\tGO:0098978\tPMID:8103915\tECO:0000005\t\t\t20240306\tSynGO\tpart_of(UBERON:0000955)\tcontributor=https://orcid.org/0000-0003-1542-3498|contributor=https://orcid.org/0000-0002-3898-5197|model-state=production|contributor=https://orcid.org/0000-0002-0808-7003|noctua-model-id=gomodel:SYNGO_275\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t3728\tinvolved_in\tGO:0016079\tPMID:8103915\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0000955)\tcontributor=https://orcid.org/0000-0003-1542-3498|contributor=https://orcid.org/0000-0002-3898-5197|model-state=production|contributor=https://orcid.org/0000-0002-0808-7003|noctua-model-id=gomodel:SYNGO_275\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t3198\tis_active_in\tGO:0098978\tPMID:11677256\tECO:0000005\t\t\t20240306\tSynGO\tpart_of(UBERON:0002421)\tcontributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4055|contributor=https://orcid.org/0000-0002-2286-1587\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t3198\tinvolved_in\tGO:0099538\tPMID:11677256\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tcontributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4055|contributor=https://orcid.org/0000-0002-2286-1587\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t620475\tis_active_in\tGO:0098978\tPMID:11677256\tECO:0000005\t\t\t20240306\tSynGO\tpart_of(UBERON:0002421)\tcontributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4056|contributor=https://orcid.org/0000-0002-2286-1587\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            },
            {
                "level": "ERROR",
                "line": "RGD\t620475\tinvolved_in\tGO:0099538\tPMID:11677256\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tcontributor=https://orcid.org/0000-0003-2916-7616|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_4056|contributor=https://orcid.org/0000-0002-2286-1587\n",
                "type": "Unknown evidence class",
                "message": "Expecting a known ECO class ID that maps to an ECO GAF code",
                "obj": "ECO:0000005",
                "taxon": "",
                "rule": 1
            }
        ]
    }
}