# GORULE violations assigned by pseudocap

## SUMMARY

This report generated on 2026-05-21

## Contents

[gorule-0000013](#gorule-0000013)[Taxon-appropriate annotation check]{}

[gorule-0000020](#gorule-0000020)[Automatic repair of annotations to merged or obsoleted terms]{}

[gorule-0000065](#gorule-0000065)[Annotations to term that are candidates for obsoletion should be produce a warning]{}

## MESSAGES

###gorule-0000013

Taxon-appropriate annotation check

* total: 10
#### Messages
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	G3XCV0	fleQ	involved_in	GO:2000155	PMID:12218010	IMP		P	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCV0
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	G3XD58	wzt	located_in	GO:0070258	PMID:23223798	EXP		C	ABC transporter domain-containing protein	wzt|PA5450	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XD58
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q03023	aprA	involved_in	GO:0001869	PMID:22131330	IDA		P	Serralysin	aprA|PA1249	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03023
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q03023	aprA	involved_in	GO:0045959	PMID:22131330	IDA		P	Serralysin	aprA|PA1249	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03023
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9HT24	glmR	involved_in	GO:0045724	PMID:14982774	IMP		P	HTH deoR-type domain-containing protein	glmR|PA5550	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT24
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9HTB8	wzm	located_in	GO:0070258	PMID:23223798	EXP		C	Transport permease protein	wzm|PA5451	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTB8
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9I3I1	dnaX	part_of	GO:0043846	PMID:15611049	IDA		C	DNA polymerase III subunit gamma/tau	dnaX|PA1532	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3I1
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9I3K2	PA1510	involved_in	GO:0006914	PMID:27477276	EXP		P	Alpha/beta hydrolase	PA1510	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3K2
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9I4N3	fleR	involved_in	GO:2000155	PMID:7591148	IMP		P	Response regulator protein FleR	fleR|PA1099	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I4N3
`
* WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB	Q9I6R8	PA0220	involved_in	GO:0051615	PMID:18833300	IMP		P	Amino acid APC family transporter	PA0220	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6R8
`

###gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 1
#### Messages
* WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB	Q9HY81	PA3529	enables	GO:0008785	PMID:21674802	IDA		F	Thioredoxin peroxidase	PA3529	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HY81
`

###gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

* total: 30
#### Messages
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	G3XCT7	ampG	involved_in	GO:0033252	PMID:20713660	IMP		P	AmpG	ampG|PA4393	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCT7
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	G3XCU9	mexZ	involved_in	GO:0032410	PMID:15105120	IMP		P	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCU9
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	G3XCW6	dnr	involved_in	GO:0051353	PMID:9767567	IMP		P	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCW6
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	G3XCW9	ampD	involved_in	GO:0033252	PMID:9835532	IMP		P	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	ampD|PA4522	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCW9
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	G3XD16	PA2523	involved_in	GO:0032411	PMID:14679195	IMP		P	Probable two-component response regulator	PA2523	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XD16
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	O85732	fmt	involved_in	GO:0022898	PMID:19786597	IMP		P	Methionyl-tRNA formyltransferase	fmt|PA0018	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:O85732
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P10932	amiR	involved_in	GO:0051345	PMID:2513374	IMP		P	Aliphatic amidase regulator	amiR|PA3363	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P10932
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P22610	pilD	involved_in	GO:0006480	PMID:23255525	IDA		P	Prepilin leader peptidase/N-methyltransferase	pilD|xcpA|PA4528	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P22610
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P23926	anr	involved_in	GO:0051353	PMID:9767567	IMP		P	Transcriptional activator protein anr	anr|PA1544	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P23926
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P24735	ampC	involved_in	GO:0033252	PMID:8405939	IDA		P	Beta-lactamase	ampC|PA4110	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P24735
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P27017	amiC	involved_in	GO:0051346	PMID:10893220	IDA		P	Aliphatic amidase expression-regulating protein	amiC|PA3364	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P27017
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P32265	nfxB	involved_in	GO:0032410	PMID:20373734	IMP		P	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P32265
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P32265	nfxB	involved_in	GO:0032410	PMID:8878035	IMP		P	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P32265
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	P53593	sucC	involved_in	GO:0046777	PMID:10671455	IDA		P	Succinate--CoA ligase [ADP-forming] subunit beta	sucC|PA1588	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P53593
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q03456	fur	involved_in	GO:1901668	PMID:8763923	IMP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03456
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HT86	ampDh2	involved_in	GO:0033252	PMID:23510438	IDA		P	N-acetylmuramoyl-L-alanine amidase	ampDh2|PA5485	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT86
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HT99	armZ	involved_in	GO:0032411	PMID:16484195	IMP		P	Antirepressor ArmZ	armZ|PA5471	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT99
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HTI4	gbdR	involved_in	GO:0010518	PMID:19103776	IMP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTI4
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HTI4	gbdR	involved_in	GO:0010922	PMID:19103776	IMP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTI4
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HTL4	oxyR	involved_in	GO:1901671	PMID:19926657	IMP		P	HTH lysR-type domain-containing protein	oxyR|PA5344	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTL4
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HWG8	PA4218	involved_in	GO:0033252	PMID:21192796	IDA		P	Probable transporter	PA4218	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HWG8
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HWX1	nrdR	involved_in	GO:0051354	PMID:25909779	IMP		P	Transcriptional repressor NrdR	nrdR|PA4057	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HWX1
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HXS0	nalC	involved_in	GO:0032410	PMID:15387820	IMP		P	HTH tetR-type domain-containing protein	nalC|PA3721	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HXS0
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HXS2	armR	involved_in	GO:0032411	PMID:15387820	IMP		P	Antirepressor for MexR, ArmR	armR|PA3719	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HXS2
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9HY46	nalD	involved_in	GO:0032410	PMID:17028276	IMP		P	HTH tetR-type domain-containing protein	nalD|PA3574	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HY46
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9I3S2	gbuR	involved_in	GO:0051345	PMID:12029055	IMP		P	HTH lysR-type domain-containing protein	gbuR|PA1422	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3S2
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9I4X0	mvfR	involved_in	GO:0051349	PMID:14739337	IMP		P	Multiple virulence factor regulator MvfR	mvfR|PA1003	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I4X0
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9I5D1	ampDh3	involved_in	GO:0033252	PMID:23510438	IDA		P	N-acetylmuramoyl-L-alanine amidase	ampDh3|PA0807	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I5D1
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9I6J7	aguR	involved_in	GO:0051346	PMID:11673419	IMP		P	HTH tetR-type domain-containing protein	aguR|PA0294	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6J7
`
* WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB	Q9I6K1	gpuR	involved_in	GO:0051345	PMID:16339950	IDA		P	HTH lysR-type domain-containing protein	gpuR|PA0289	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6K1
`