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(GAF colummn 2) when annotating to \u2018self-binding\u2019 terms", "obj": "", "taxon": "", "rule": 46 }, { "level": "WARNING", "line": "MGI\tMGI:97998\tacts_upstream_of_or_within\tGO:0051260\tPMID:20055437\tECO:0000353\tPR:P32958\t\t20200519\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_97998|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Violates GO Rule", "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms", "obj": "", "taxon": "", "rule": 46 }, { "level": "WARNING", "line": "MGI\tMGI:97998\tenables\tGO:0042803\tPMID:26420485\tECO:0000353\tPR:P32958\t\t20200519\tMGI\thas_input(PR:P32958)\tnoctua-model-id=gomodel:MGI_MGI_97998|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Violates GO Rule", "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms", "obj": "", "taxon": "", "rule": 46 }, { "level": "WARNING", "line": "MGI\tMGI:97998\tenables\tGO:0042803\tPMID:20055437\tECO:0000353\tPR:P32958\t\t20200519\tMGI\thas_input(PR:P32958)\tnoctua-model-id=gomodel:MGI_MGI_97998|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Violates GO Rule", "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms", "obj": "", "taxon": "", "rule": 46 }, { "level": "WARNING", "line": "MGI\tMGI:98553\tacts_upstream_of_or_within\tGO:0051289\tPMID:21606376\tECO:0000314\t\t\t20111207\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_98553|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000046: The \u2018with\u2019 field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to \u2018self-binding\u2019 terms", "obj": "", "taxon": "", "rule": 46 } ], "gorule-0000050": [ { "level": "WARNING", "line": "MGI\tMGI:97999\tenables\tGO:0004713\tGO_REF:0000024\tECO:0000250\tMGI:MGI:97999\t\t20240228\tUniProt\tpart_of(GO:0038083),has_input(MGI:MGI:97999)\tnoctua-model-id=gomodel:65d7e4ac00000470|model-state=production|contributor=https://orcid.org/0000-0001-8769-177X\n", "type": "Violates GO Rule", "message": "GORULE:0000050: Annotations to ISS, ISA and ISO should not be self-referential", "obj": "", "taxon": "", "rule": 50 }, { "level": "WARNING", "line": "MGI\tMGI:96055\tenables\tGO:0004725\tGO_REF:0000024\tECO:0000250\tMGI:MGI:96055\t\t20240228\tUniProt\thas_input(MGI:MGI:97999)\tnoctua-model-id=gomodel:65d7e4ac00000470|model-state=production|contributor=https://orcid.org/0000-0001-8769-177X\n", "type": "Violates GO Rule", "message": "GORULE:0000050: Annotations to ISS, ISA and ISO should not be self-referential", "obj": "", "taxon": "", "rule": 50 }, { "level": "WARNING", "line": "MGI\tMGI:97999\tinvolved_in\tGO:0038083\tGO_REF:0000024\tECO:0000250\tMGI:MGI:97999\t\t20240228\tUniProt\t\tnoctua-model-id=gomodel:65d7e4ac00000470|model-state=production|contributor=https://orcid.org/0000-0001-8769-177X\n", "type": "Violates GO Rule", "message": "GORULE:0000050: Annotations to ISS, ISA and ISO should not be self-referential", "obj": "", "taxon": "", "rule": 50 } ], "gorule-0000055": [], "gorule-0000058": [], "gorule-0000061": [ { "level": "WARNING", "line": "MGI\tMGI:97451\tinvolved_in\tGO:0003700\tPMID:26494787\tECO:0000302\t\t\t20160919\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:57c82fad00000403\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:99783\tinvolved_in\tGO:0003700\tPMID:26494787\tECO:0000305\t\t\t20160916\tMGI\toccurs_in(EMAPA:16050)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:57c82fad00000403\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2681164\tinvolved_in\tGO:0120016\tPMID:23913272\tECO:0000315\t\t\t20170629\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:5941cdbd00000947|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2681164\tinvolved_in\tGO:0120016\tPMID:23913272\tECO:0000315\tMGI:5544728\t\t20170629\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:5941cdbd00000947|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:103038\tinvolved_in\tGO:0001228\tPMID:19911006\tECO:0000314\t\t\t20250724\tMGI\tpart_of(GO:0030968),part_of(GO:2001243),occurs_in(CL:0000169),occurs_in(GO:0005634)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:5ce58dde00001215|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109484\tacts_upstream_of_or_within\tGO:0000977\tPMID:29118970\tECO:0000315\t\t\t20190904\tMGI\t\tnoctua-model-id=gomodel:5d29221b00001644|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:88385\tacts_upstream_of_or_within\tGO:0071813\tPMID:25991857\tECO:0000353\t\t\t20191114\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5db9c9a500000632\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:894663\tacts_upstream_of_or_within\tGO:0050840\tPMID:19850926\tECO:0000315\t\t\t20200402\tMGI\t\tnoctua-model-id=gomodel:5e72450500001046|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1338938\tinvolved_in\tGO:0098821\tPMID:10564272\tECO:0000304\t\t\t20201215\tMGI\tpart_of(GO:0030509)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:5fce9b7300000367|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1095407\tinvolved_in\tGO:0098821\tPMID:21976273\tECO:0000314\t\t\t20201214\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:5fce9b7300000367|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:107191\tinvolved_in\tGO:0098821\tPMID:11714695\tECO:0000314\t\t\t20201217\tMGI\tpart_of(GO:0030509),directly_positively_regulates(GO:0004674)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:5fce9b7300000434|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2137520\tacts_upstream_of_or_within\tGO:0008201\tPMID:15381701\tECO:0000314\t\t\t20210524\tMGI\t\tnoctua-model-id=gomodel:60897d8500000785|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:107931\tacts_upstream_of_or_within\tGO:0035497\tPMID:32385399\tECO:0000315\tMGI:MGI:3043976\t\t20210614\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0046982\tPMID:11231009\tECO:0000353\tUniProtKB:P97875\t\t20210608\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0035497\tPMID:2138707\tECO:0000314\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:96646\tacts_upstream_of_or_within\tGO:0035497\tPMID:2138707\tECO:0000314\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0035497\tPMID:2138707\tECO:0000315\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0035497\tPMID:11231009\tECO:0000314\t\t\t20210608\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:96646\tacts_upstream_of_or_within\tGO:0035497\tPMID:2138707\tECO:0000315\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:107931\tacts_upstream_of_or_within\tGO:0001228\tPMID:32385399\tECO:0000314\t\t\t20210614\tMGI\tpart_of(GO:0001659),part_of(GO:0006606),part_of(GO:0070342),part_of(GO:0097009),has_input(MGI:MGI:1342774),has_input(MGI:MGI:98894)\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0001228\tPMID:32385399\tECO:0000314\t\t\t20210614\tMGI\tpart_of(GO:0001659),part_of(GO:0006606),part_of(GO:0070342),part_of(GO:0097009),has_input(MGI:MGI:1342774),has_input(MGI:MGI:98894)\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1932093\tacts_upstream_of_or_within\tGO:0046982\tPMID:11231009\tECO:0000353\tUniProtKB:P16951\t\t20210608\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1932093\tacts_upstream_of_or_within\tGO:0035497\tPMID:11231009\tECO:0000314\t\t\t20210608\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:95574\tacts_upstream_of_or_within\tGO:0000977\tPMID:2138707\tECO:0000314\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:107931\tacts_upstream_of_or_within\tGO:0001228\tPMID:32385399\tECO:0000315\tMGI:MGI:3043976\t\t20210614\tMGI\tpart_of(GO:0001659),part_of(GO:0006606),part_of(GO:0070342),part_of(GO:0097009),has_input(MGI:MGI:1342774),has_input(MGI:MGI:98894)\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:96646\tacts_upstream_of_or_within\tGO:0000977\tPMID:2138707\tECO:0000314\t\t\t20210609\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109349\tacts_upstream_of_or_within\tGO:0001228\tPMID:32385399\tECO:0000315\tMGI:MGI:3043976\t\t20210614\tMGI\tpart_of(GO:0001659),part_of(GO:0006606),part_of(GO:0070342),part_of(GO:0097009),has_input(MGI:MGI:1342774),has_input(MGI:MGI:98894)\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:60ad85f700000058\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:98534\tinvolved_in\tGO:0140104\tPMID:21655200\tECO:0000314\t\t\t20220204\tMGI\tpart_of(GO:0015889),occurs_in(EMAPA:16332),occurs_in(GO:0005576)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:613aae0000000341\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:98534\tinvolved_in\tGO:0140104\tPMID:21655200\tECO:0000314\t\t\t20220623\tMGI\tpart_of(GO:0015889),occurs_in(EMAPA:18380),occurs_in(GO:0005576),has_input(CHEBI:140785)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:62900b6400002552|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1202394\tinvolved_in\tGO:0140104\tPMID:14321840\tECO:0000314\t\t\t20220623\tMGI\toccurs_in(EMAPA:17021),occurs_in(GO:0005576),has_input(CHEBI:140785),directly_positively_regulates(GO:0140355)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:62900b6400002552|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:6456615\tlocated_in\tGO:0005575\tGO_REF:0000015\tECO:0000307\t\t\t20220629\tMGI\t\tcontributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:62b4ffe300002039\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of RO:0002432. Repaired to RO:0002432", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1890510\tinvolved_in\tGO:0015078\tPMID:12963731\tECO:0000314\t\t\t20220819\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1328318\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1201780\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1913540\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:88116\tinvolved_in\tGO:0015078\tPMID:12963731\tECO:0000314\t\t\t20220819\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1921084\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:104855\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:104855\tinvolved_in\tGO:0015078\tPMID:12963731\tECO:0000314\t\t\t20220819\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1328318\tinvolved_in\tGO:0015078\tPMID:12963731\tECO:0000314\t\t\t20220819\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1890510\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1914864\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1913394\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1201778\tinvolved_in\tGO:0015078\tPMID:12963731\tECO:0000314\t\t\t20220819\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1201778\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1913585\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:88116\tinvolved_in\tGO:0015078\tPMID:12163484\tECO:0000266\tUniProtKB:Q9UI12\t\t20220819\tMGI\tpart_of(GO:0038020)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:62f58d8800001119\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:96789\tacts_upstream_of_or_within\tGO:0050253\tPMID:27354281\tECO:0000315\tMGI:MGI:2451080\t\t20230118\tMGI\t\tmodel-state=production|noctua-model-id=gomodel:63c0ac2b00000869|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1342270\tacts_upstream_of_or_within\tGO:0043236\tPMID:15788414\tECO:0000314\t\t\t20230201\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:63d320cd00000465\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1309503\tacts_upstream_of_or_within\tGO:0015267\tPMID:15608631\tECO:0000315\t\t\t20230314\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:63f809ec00002168\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1336181\tacts_upstream_of_or_within\tGO:0005267\tPMID:26312501\tECO:0000314\t\t\t20230330\tMGI\t\tnoctua-model-id=gomodel:641ce4dc00001163|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1309503\tacts_upstream_of_or_within\tGO:0005267\tPMID:26312501\tECO:0000314\t\t\t20230330\tMGI\t\tnoctua-model-id=gomodel:641ce4dc00001163|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1100508\tacts_upstream_of_or_within\tGO:0005267\tPMID:16501027\tECO:0000316\tMGI:MGI:107501\t\t20230404\tMGI\t\tnoctua-model-id=gomodel:641ce4dc00001615|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:107501\tacts_upstream_of_or_within\tGO:0005267\tPMID:16501027\tECO:0000316\tMGI:MGI:1100508\t\t20230404\tMGI\t\tnoctua-model-id=gomodel:641ce4dc00001615|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:96160\tacts_upstream_of_or_within\tGO:0043559\tPMID:15924147\tECO:0000315\tMGI:MGI:3583805\t\t20230503\tMGI\t\tnoctua-model-id=gomodel:6446bfcb00000683|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:88459\tacts_upstream_of_or_within\tGO:0005201\tPMID:24302007\tECO:0000315\tMGI:MGI:2153356\t\t20231003\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:6516135700000512\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:88459\tacts_upstream_of_or_within\tGO:0030020\tPMID:25158062\tECO:0000315\tMGI:MGI:2153356\t\t20231004\tMGI\t\tnoctua-model-id=gomodel:6516135700000877|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2148804\tinvolved_in\tGO:0005681\tPMID:33660780\tECO:0000314\t\t\t20260313\tMGI\t\tnoctua-model-id=gomodel:65c57c3400000619|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2685767\tacts_upstream_of_or_within\tGO:0044877\tPMID:36255054\tECO:0000314\t\t\t20241204\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:67369e7600003985\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2442621\tacts_upstream_of_or_within\tGO:0044877\tPMID:36851842\tECO:0000315\t\t\t20241218\tMGI\t\tnoctua-model-id=gomodel:675b862c00000760|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97798\tinvolved_in\tGO:0004666\tPMID:33730589\tECO:0000315\tMGI:MGI:3844713\t\t20251217\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:67c10cc400001632\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97798\tinvolved_in\tGO:0004666\tPMID:1339449\tECO:0000314\t\t\t20251217\tMGI\toccurs_in(GO:0005788)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:67c10cc400002461|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97797\tinvolved_in\tGO:0004666\tPMID:8914934\tECO:0000314\t\t\t20251217\tMGI\toccurs_in(GO:0005788)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:67c10cc400002481\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97797\tinvolved_in\tGO:0004666\tPMID:8914934\tECO:0000314\t\t\t20251217\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:67c10cc400003329\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97797\tinvolved_in\tGO:0004666\tPMID:8914934\tECO:0000314\t\t\t20251217\tMGI\toccurs_in(GO:0005788)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:67c10cc400003560|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97798\tinvolved_in\tGO:0004666\tPMID:1339449\tECO:0000314\t\t\t20251217\tMGI\toccurs_in(GO:0005788)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:67c10cc400003706\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97797\tinvolved_in\tGO:0004666\tPMID:8914934\tECO:0000314\t\t\t20251217\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:67c10cc400005077\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:98364\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:99211\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1919200\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:101893\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:97250\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:98510\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1342287\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:109452\tacts_upstream_of_or_within\tGO:1990841\tPMID:21874018\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003022|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1923707\tacts_upstream_of_or_within\tGO:0003774\tPMID:34382738\tECO:0000315\t\t\t20250812\tMGI\t\tnoctua-model-id=gomodel:6882d2b800003836|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2139014\tinvolved_in\tGO:0005789\tPMID:30028970\tECO:0000269\t\t\t20251027\tUniProt\t\tnoctua-model-id=gomodel:68fac5ed00000361|model-state=production|contributor=https://orcid.org/0000-0001-8769-177X\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002432, RO:0001025, RO:0002325. Repaired to RO:0001025", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2136910\tacts_upstream_of_or_within\tGO:0000978\tPMID:35297980\tECO:0000250\tUniProtKB:Q9BXL5\t\t20260422\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:69d8496c00005252\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2136910\tacts_upstream_of_or_within\tGO:0000978\tPMID:35297980\tECO:0000315\t\t\t20260422\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:69d8496c00005252\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "PR\tQ61584-7\tpart_of\tGO:0005840\tPMID:11178106\tECO:0000314\t\t\t20140401\tMGI\tpart_of(CL:0000188)\tnoctua-model-id=gomodel:MGI_MGI_104860|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0001025, RO:0002325. Repaired to RO:0001025", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1351630\tacts_upstream_of_or_within\tGO:0008150\tGO_REF:0000015\tECO:0000307\t\t\t20240705\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1351630|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002331. Repaired to RO:0002331", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1351630\tpart_of\tGO:0005575\tGO_REF:0000015\tECO:0000307\t\t\t20240705\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1351630|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432. Repaired to RO:0002432", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:30185526\tECO:0000353\tUniProtKB:Q8VIG3\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:11237735\tECO:0000247\tUniProtKB:O46178\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:11237735\tECO:0000247\tUniProtKB:Q01657\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:30185526\tECO:0000353\tUniProtKB:Q8BYM7\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:11237735\tECO:0000247\tUniProtKB:Q01656\t\t20010418\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_1927643|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:30185526\tECO:0000353\tUniProtKB:Q9D9V4\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:1927643\tlocated_in\tGO:0001535\tPMID:30185526\tECO:0000353\tUniProtKB:E9PYQ0\t\t20230323\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1927643|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2446129\tacts_upstream_of_or_within\tGO:0008150\tGO_REF:0000015\tECO:0000307\t\t\t20240717\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|model-state=production|noctua-model-id=gomodel:MGI_MGI_2446129\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002264 should be one of RO:0002331. Repaired to RO:0002331", "obj": "", "taxon": "", "rule": 61 }, { "level": "WARNING", "line": "MGI\tMGI:2446129\tlocated_in\tGO:0005575\tGO_REF:0000015\tECO:0000307\t\t\t20240717\tMGI\t\tcontributor=https://orcid.org/0000-0001-5501-853X|model-state=production|noctua-model-id=gomodel:MGI_MGI_2446129\n", "type": "Violates GO Rule", "message": "GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of RO:0002432. Repaired to RO:0002432", "obj": "", "taxon": "", "rule": 61 } ], "gorule-0000063": [ { "level": "WARNING", "line": "MGI\tMGI:3650683\tacts_upstream_of_or_within_negative_effect\tGO:0010467\tPMID:26035178\tECO:0000266\t\t\t20260317\tMGI\thas_input(MGI:MGI:107636)\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ce58dde00002231\n", "type": "Violates GO Rule", "message": "GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)", "obj": "", "taxon": "", "rule": 63 }, { "level": "WARNING", "line": "MGI\tMGI:3650683\tacts_upstream_of_or_within_negative_effect\tGO:0035725\tPMID:26035178\tECO:0000266\t\t\t20190710\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0003-3394-9805|noctua-model-id=gomodel:5ce58dde00002231\n", "type": "Violates GO Rule", "message": "GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)", "obj": "", "taxon": "", "rule": 63 }, { "level": "WARNING", "line": "MGI\tMGI:3642368\tlocated_in\tGO:0005737\tPMID:17921506\tECO:0000266\t\t\t20190924\tMGI\t\tnoctua-model-id=gomodel:5d29221b00002730|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Violates GO Rule", "message": "GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)", "obj": "", "taxon": "", "rule": 63 }, { "level": "WARNING", "line": "MGI\tMGI:102470\tenables\tGO:0030533\tPMID:7332926\tECO:0000250\t\t\t20020121\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_102470|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)", "obj": "", "taxon": "", "rule": 63 }, { "level": "WARNING", "line": 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"MGI\tMGI:99878\tacts_upstream_of_or_within\tGO:0006470\tPMID:14664809\tECO:0000314\t\t\t20050914\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_99878|model-state=production\n", "type": "Violates GO Rule", "message": "GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed", "obj": "", "taxon": "", "rule": 65 }, { "level": "WARNING", "line": "MGI\tMGI:99928\tacts_upstream_of_or_within\tGO:0018108\tPMID:10872802\tECO:0000314\t\t\t20060726\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_99928|model-state=production|contributor=https://orcid.org/0000-0001-9990-8331\n", "type": "Violates GO Rule", "message": "GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed", "obj": "", "taxon": "", "rule": 65 } ], "gorule-0000013": [], "gorule-0000001": [ { "level": "ERROR", "line": "MGI\tMGI:97451\tinvolved_in\tGO:0003700\tPMID:26494787\tECO:0000302\t\t\t20160919\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:57c82fad00000403\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000302", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:104661\tinvolved_in\tGO:0072539\tPMID:20383124\tECO:0000312\tMGI:MGI:1857035\t\t20221004\tMGI\t\tnoctua-model-id=gomodel:633b013300000143|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000312", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:1919158\tenables\tGO:0005515\tPMID:37798277\tECO:0000353\tUniProtKB:Q9Z0G9|UniProtKB:\t\t20250924\tMGI\t\tnoctua-model-id=gomodel:68b0f0d000009625|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805", "type": "Invalid symbol", "message": "Problem parsing With/From column", "obj": "UniProtKB:Q9Z0G9|UniProtKB:", "taxon": "NCBITaxon:0", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:2149290\tacts_upstream_of_or_within\tGO:0001701\tPMID:32231122\tECO:0000316\tMGI:MGI:2684943,MGI:MGI:2684945\t\t20220114\tMGI\tresults_in_developmental_progression_of(EMAPA:16040)\tnoctua-model-id=gomodel:MGI_MGI_2149290|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693", "type": "Syntax error in annotation extension field", "message": "extensions should be relation(curie)", "obj": "results_in_developmental_progression_of(EMAPA:16040)", "taxon": "NCBITaxon:0", "rule": 1 }, { "level": "ERROR", "line": 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"MGI\tMGI:96083\tinvolved_in\tGO:0099527\tPMID:15494726\tECO:0000230\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0001844)\tcontributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_2775|contributor=https://orcid.org/0000-0002-2286-1587\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000230", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:96083\tis_active_in\tGO:0098978\tPMID:15494726\tECO:0000230\t\t\t20240306\tSynGO\tpart_of(UBERON:0001844)\tcontributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|noctua-model-id=gomodel:SYNGO_2775|contributor=https://orcid.org/0000-0002-2286-1587\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000230", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:108442\tinvolved_in\tGO:0099547\tPMID:18716208\tECO:0000230\t\t\t20240306\tSynGO\toccurs_in(GO:0098978),occurs_in(UBERON:0002421)\tnoctua-model-id=gomodel:SYNGO_3015|contributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000230", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:108442\tis_active_in\tGO:0098978\tPMID:18716208\tECO:0000230\t\t\t20240306\tSynGO\tpart_of(UBERON:0002421)\tnoctua-model-id=gomodel:SYNGO_3015|contributor=https://orcid.org/0000-0003-0593-3443|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216|contributor=https://orcid.org/0000-0002-2286-1587\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000230", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:109446\tinvolved_in\tGO:0099502\tPMID:20150444\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(UBERON:0002421)\tnoctua-model-id=gomodel:SYNGO_3745|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000005", "taxon": "", "rule": 1 }, { "level": "ERROR", "line": "MGI\tMGI:109446\tinvolved_in\tGO:0099502\tPMID:20150444\tECO:0000005\t\t\t20240306\tSynGO\toccurs_in(UBERON:0002037)\tnoctua-model-id=gomodel:SYNGO_3745|model-state=production|contributor=https://orcid.org/0000-0002-2514-0216\n", "type": "Unknown evidence class", "message": "Expecting a known ECO class ID that maps to an ECO GAF code", "obj": "ECO:0000005", "taxon": "", "rule": 1 } ], "gorule-0000020": [ { "level": "ERROR", "line": "MGI\tMGI:96067\tacts_upstream_of_or_within\tGO:0000052\tPMID:17213233\tECO:0000315\tMGI:MGI:2177757\t\t20080502\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0002-9796-7693|noctua-model-id=gomodel:MGI_MGI_96067\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0000052", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:95621\tacts_upstream_of_or_within\tGO:0003361\tPMID:17156762\tECO:0000315\t\t\t20200604\tMGI\tpart_of(GO:0003360)\tnoctua-model-id=gomodel:5ed1aab700000013|model-state=production|contributor=https://orcid.org/0000-0003-3394-9805\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003361", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": 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"MGI\tMGI:108078\tacts_upstream_of_or_within\tGO:2000041\tPMID:18257070\tECO:0000316\tMGI:MGI:892014\t\t20100831\tMGI\tnegatively_regulates(GO:0003402)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_108078|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:108078\tacts_upstream_of_or_within\tGO:2000041\tPMID:18257070\tECO:0000316\tMGI:MGI:2135272\t\t20100831\tMGI\tnegatively_regulates(GO:0003402)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_108078|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": 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"MGI\tMGI:1860298\tacts_upstream_of_or_within\tGO:2000041\tPMID:18257070\tECO:0000316\tMGI:MGI:108078\t\t20100831\tMGI\tnegatively_regulates(GO:0003402)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_1860298|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:2135272\tacts_upstream_of_or_within\tGO:0003402\tPMID:18257070\tECO:0000316\tMGI:MGI:1860298\t\t20100831\tMGI\toccurs_in(EMAPA:16039)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_2135272|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": 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"MGI\tMGI:98958\tacts_upstream_of_or_within\tGO:0003402\tPMID:25813538\tECO:0000315\tMGI:MGI:1857617\t\t20150612\tMGI\toccurs_in(EMAPA:16183)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_98958|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:98958\tacts_upstream_of_or_within\tGO:0003402\tPMID:25813538\tECO:0000316\tMGI:MGI:101948\t\t20150612\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_98958|model-state=production\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:0003402", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": 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"Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:2001106", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:2443417\tacts_upstream_of_or_within\tGO:2001257\tPMID:30886335\tECO:0000314\t\t\t20220811\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_2443417|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:2001257", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:2443417\tacts_upstream_of_or_within\tGO:2001257\tPMID:30886335\tECO:0000315\tMGI:MGI:6690870\t\t20220811\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_2443417|model-state=production|contributor=https://orcid.org/0000-0002-9796-7693\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:2001257", "taxon": "", "rule": 20 }, { "level": "ERROR", "line": "MGI\tMGI:88025\tacts_upstream_of_or_within\tGO:2001257\tPMID:20610380\tECO:0000315\tMGI:MGI:2179754\t\t20120620\tMGI\tregulates(GO:0005261),has_input(MGI:MGI:107501)\tcontributor=https://orcid.org/0000-0001-7476-6306|model-state=production|noctua-model-id=gomodel:MGI_MGI_88025\n", "type": "Obsolete class with no replacement", "message": "Violates GORULE:0000020", "obj": "GO:2001257", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:2178563\tinvolved_in\tGO:0006202\tPMID:5560407\tECO:0000314\t\t\t20260108\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:60418ffa00000790|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0006202", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:2178563\tenables\tGO:0008253\tPMID:5560407\tECO:0000314\t\t\t20210317\tMGI\tpart_of(GO:0006202)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:60418ffa00000790|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0006202", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:97365\tinvolved_in\tGO:0006202\tPMID:11783524\tECO:0000315\t\t\t20260108\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:60418ffa00000790|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0006202", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:97365\tenables\tGO:0004731\tPMID:11783524\tECO:0000315\t\t\t20210317\tMGI\tpart_of(GO:0006202)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:60418ffa00000790|model-state=production\n", "type": "Obsolete 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"MGI\tMGI:1096865\tlocated_in\tGO:0055038\tPMID:10191086\tECO:0000305\tGO:0016021\t\t20080804\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_1096865|model-state=production|contributor=https://orcid.org/0000-0001-9990-8331\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0016021", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1929601\tlocated_in\tGO:0000139\tPMID:11748237\tECO:0000305\tGO:0016021\t\t20081118\tMGI\t\tnoctua-model-id=gomodel:MGI_MGI_1929601|model-state=production|contributor=https://orcid.org/0000-0001-9990-8331\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0016021", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:95499\tlocated_in\tGO:0005886\tPMID:8552190\tECO:0000305\tGO:0016021\t\t20040119\tMGI\t\tmodel-state=production|contributor=https://orcid.org/0000-0001-9990-8331|noctua-model-id=gomodel:MGI_MGI_95499\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0016021", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1915130\tenables\tGO:0050038\tPMID:22042873\tECO:0000266\tUniProtKB:Q7Z4W1\t\t20220405\tMGI\tpart_of(GO:0019640)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:2142985\tinvolved_in\tGO:0019640\tPMID:23179721\tECO:0000266\tUniProtKB:O75191\t\t20220405\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:98266\tenables\tGO:0046526\tPMID:38160\tECO:0000314\t\t\t20220411\tMGI\tpart_of(GO:0019640),occurs_in(GO:0005829)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1915130\tinvolved_in\tGO:0019640\tPMID:11882650\tECO:0000314\t\t\t20220405\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1929955\tinvolved_in\tGO:0019640\tPMID:38160\tECO:0000314\t\t\t20220405\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete 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"MGI\tMGI:1915130\tenables\tGO:0050038\tPMID:11882650\tECO:0000314\t\t\t20220405\tMGI\tpart_of(GO:0019640)\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1915130\tinvolved_in\tGO:0019640\tPMID:22042873\tECO:0000266\tUniProtKB:Q7Z4W1\t\t20220405\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete class", "message": "Violates GORULE:0000020, but was repaired", "obj": "GO:0019640", "taxon": "", "rule": 20 }, { "level": "WARNING", "line": "MGI\tMGI:1915881\tinvolved_in\tGO:0019640\tPMID:38160\tECO:0000314\t\t\t20220405\tMGI\t\tcontributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:6246724f00000078|model-state=production\n", "type": "Obsolete 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