# Group: pseudocap - Dataset: pseudocap

## SUMMARY

This report generated on 2026-05-20

  * Associations: 22070
  * Lines in file (incl headers): 28996
  * Lines skipped: 6922
## Header From Original Association File

> !gaf-version: 2.2  
> !generated-by: UniProt  
> !date-generated: 2026-04-30 09:39  
> !go-version: http://purl.obolibrary.org/obo/go/releases/2026-04-27/extensions/go-plus.ofn  

## Contents

[gorule-0000001](#gorule-0000001)

[gorule-0000002](#gorule-0000002)

[gorule-0000005](#gorule-0000005)

[gorule-0000006](#gorule-0000006)

[gorule-0000007](#gorule-0000007)

[gorule-0000008](#gorule-0000008)

[gorule-0000011](#gorule-0000011)

[gorule-0000013](#gorule-0000013)

[gorule-0000015](#gorule-0000015)

[gorule-0000016](#gorule-0000016)

[gorule-0000017](#gorule-0000017)

[gorule-0000018](#gorule-0000018)

[gorule-0000020](#gorule-0000020)

[gorule-0000022](#gorule-0000022)

[gorule-0000027](#gorule-0000027)

[gorule-0000028](#gorule-0000028)

[gorule-0000029](#gorule-0000029)

[gorule-0000030](#gorule-0000030)

[gorule-0000037](#gorule-0000037)

[gorule-0000039](#gorule-0000039)

[gorule-0000042](#gorule-0000042)

[gorule-0000043](#gorule-0000043)

[gorule-0000046](#gorule-0000046)

[gorule-0000050](#gorule-0000050)

[gorule-0000055](#gorule-0000055)

[gorule-0000058](#gorule-0000058)

[gorule-0000061](#gorule-0000061)

[gorule-0000063](#gorule-0000063)

[gorule-0000064](#gorule-0000064)

[gorule-0000065](#gorule-0000065)

[other](#other)


## MESSAGES

### gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

* total: 6
#### Messages
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000007FE81_208964	URS000007FE81_208964	enables	GO:0004526	GO_REF:0000115	IEA	Rfam:RF00010	F	Pseudomonas aeruginosa PAO1 RNA component of RNaseP, RnpB		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000007FE81_208964	URS000007FE81_208964	involved_in	GO:0008033	GO_REF:0000115	IEA	Rfam:RF00010	P	Pseudomonas aeruginosa PAO1 RNA component of RNaseP, RnpB		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000007FE81_208964	URS000007FE81_208964	part_of	GO:0030680	GO_REF:0000115	IEA	Rfam:RF00010	C	Pseudomonas aeruginosa PAO1 RNA component of RNaseP, RnpB		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000011DFA5_208964	URS000011DFA5_208964	enables	GO:0004526	GO_REF:0000115	IEA	Rfam:RF00010	F	Pseudomonas aeruginosa PAO1 Bacterial RNase P class A		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000011DFA5_208964	URS000011DFA5_208964	involved_in	GO:0008033	GO_REF:0000115	IEA	Rfam:RF00010	P	Pseudomonas aeruginosa PAO1 Bacterial RNase P class A		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
* WARNING - Invalid subject type: defaulting to 'gene_product' (enzymatic_RNA) -- `RNAcentral	URS000011DFA5_208964	URS000011DFA5_208964	part_of	GO:0030680	GO_REF:0000115	IEA	Rfam:RF00010	C	Pseudomonas aeruginosa PAO1 Bacterial RNase P class A		enzymatic_RNA	taxon:208964	20260428	RNAcentral		`
### gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

* total: 0
### gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to 'protein binding ; GO:0005515 or GO:0005488 binding''

* total: 0
### gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

* total: 3
#### Messages
* ERROR - Violates GO Rule: GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology -- `UniProtKB	Q03456	fur	enables	GO:0000976	PMID:21546589	IEP		F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* ERROR - Violates GO Rule: GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology -- `UniProtKB	Q03456	fur	enables	GO:0001217	PMID:21546589	IEP		F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* ERROR - Violates GO Rule: GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology -- `UniProtKB	Q03456	fur	part_of	GO:0032993	PMID:21546589	IEP		C	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
### gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

* total: 0
### gorule-0000008

No annotations should be made to uninformative high level terms

* total: 3
#### Messages
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `UniProtKB	P72173	aspC	involved_in	GO:0170038	GO_REF:0000117	IEA	ARBA:ARBA00044576	P	Aspartate aminotransferase	aspC|PA3139	protein	taxon:208964	20260428	UniProt		UniProtKB:P72173
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `UniProtKB	Q9HXI6	cysE	involved_in	GO:0170039	GO_REF:0000117	IEA	ARBA:ARBA00044577	P	serine O-acetyltransferase	cysE|PA3816	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HXI6
`
* WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- `UniProtKB	Q9I210	PA2105	involved_in	GO:0170039	GO_REF:0000117	IEA	ARBA:ARBA00044577	P	serine O-acetyltransferase	PA2105	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I210
`
### gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

* total: 0
### gorule-0000013

Taxon-appropriate annotation check

* total: 11
#### Messages
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	G3XCV0	fleQ	involved_in	GO:2000155	PMID:12218010	IMP		P	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCV0
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	G3XD58	wzt	located_in	GO:0070258	PMID:23223798	EXP		C	ABC transporter domain-containing protein	wzt|PA5450	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XD58
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q03023	aprA	involved_in	GO:0001869	PMID:22131330	IDA		P	Serralysin	aprA|PA1249	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03023
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q03023	aprA	involved_in	GO:0045959	PMID:22131330	IDA		P	Serralysin	aprA|PA1249	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03023
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9HT24	glmR	involved_in	GO:0045724	PMID:14982774	IMP		P	HTH deoR-type domain-containing protein	glmR|PA5550	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT24
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9HTB8	wzm	located_in	GO:0070258	PMID:23223798	EXP		C	Transport permease protein	wzm|PA5451	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTB8
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9I3I1	dnaX	part_of	GO:0043846	PMID:15611049	IDA		C	DNA polymerase III subunit gamma/tau	dnaX|PA1532	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3I1
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9I3K2	PA1510	involved_in	GO:0006914	PMID:27477276	EXP		P	Alpha/beta hydrolase	PA1510	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3K2
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9I4N3	fleR	involved_in	GO:2000155	PMID:7591148	IMP		P	Response regulator protein FleR	fleR|PA1099	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I4N3
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9I5W4	impA	involved_in	GO:1903237	PMID:22309196	IDA		P	Immunomodulating metalloprotease	impA|PA0572	protein	taxon:208964	20160512	UniProt		UniProtKB:Q9I5W4
`
* WARNING - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- `UniProtKB	Q9I6R8	PA0220	involved_in	GO:0051615	PMID:18833300	IMP		P	Amino acid APC family transporter	PA0220	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6R8
`
### gorule-0000015

Dual species taxon check

* total: 0
### gorule-0000016

With/From: IC annotations require a With/From GO ID

* total: 0
### gorule-0000017

IDA annotations must not have a With/From entry

* total: 0
### gorule-0000018

IPI annotations require a With/From entry

* total: 0
### gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

* total: 40
#### Messages
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006528) -- `UniProtKB	Q9I407	ansB	involved_in	GO:0006528	GO_REF:0000002	IEA	InterPro:IPR004550	P	Glutaminase-asparaginase	ansB|PA1337	protein	taxon:208964	20260428	InterPro		UniProtKB:Q9I407
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006568) -- `UniProtKB	P07344	trpA	involved_in	GO:0006568	GO_REF:0000002	IEA	InterPro:IPR002028	P	Tryptophan synthase alpha chain	trpA|PA0035	protein	taxon:208964	20260428	InterPro		UniProtKB:P07344
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006568) -- `UniProtKB	P07345	trpB	involved_in	GO:0006568	GO_REF:0000002	IEA	InterPro:IPR006653|InterPro:IPR006654	P	Tryptophan synthase beta chain	trpB|PA0036	protein	taxon:208964	20260428	InterPro		UniProtKB:P07345
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006568) -- `UniProtKB	P20577	trpC	involved_in	GO:0006568	GO_REF:0000002	IEA	InterPro:IPR001468	P	Indole-3-glycerol phosphate synthase	trpC|PA0651	protein	taxon:208964	20260428	InterPro		UniProtKB:P20577
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006568) -- `UniProtKB	Q59649	trpF	involved_in	GO:0006568	GO_REF:0000002	IEA	InterPro:IPR001240	P	N-(5'-phosphoribosyl)anthranilate isomerase	trpF|PA3113	protein	taxon:208964	20260428	InterPro		UniProtKB:Q59649
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	P38100	carB	involved_in	GO:1901605	GO_REF:0000117	IEA	ARBA:ARBA00026968	P	Carbamoyl phosphate synthase large chain	carB|PA4756	protein	taxon:208964	20260428	UniProt		UniProtKB:P38100
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9HUE4	metY	involved_in	GO:1901605	GO_REF:0000117	IEA	ARBA:ARBA00026968	P	Homocysteine synthase	metY|PA5025	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HUE4
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9HWP9	PA4132	involved_in	GO:1901605	GO_REF:0000033	IBA	CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000203534|SGD:S000001179|SGD:S000003170|UniProtKB:P09053|UniProtKB:Q8N5Z0	P	HTH gntR-type domain-containing protein	PA4132	protein	taxon:208964	20240801	GO_Central		UniProtKB:Q9HWP9
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9HZV0	PA2897	involved_in	GO:1901605	GO_REF:0000033	IBA	CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000203534|SGD:S000001179|SGD:S000003170|UniProtKB:P09053|UniProtKB:Q8N5Z0	P	HTH gntR-type domain-containing protein	PA2897	protein	taxon:208964	20240801	GO_Central		UniProtKB:Q9HZV0
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I0D3	cysK	involved_in	GO:1901605	GO_REF:0000117	IEA	ARBA:ARBA00026968	P	Cysteine synthase	cysK|PA2709	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I0D3
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I211	PA2104	involved_in	GO:1901605	GO_REF:0000117	IEA	ARBA:ARBA00026968	P	Cysteine synthase	PA2104	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I211
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I215	PA2100	involved_in	GO:1901605	GO_REF:0000033	IBA	CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000203534|SGD:S000001179|SGD:S000003170|UniProtKB:P09053|UniProtKB:Q8N5Z0	P	HTH gntR-type domain-containing protein	PA2100	protein	taxon:208964	20240801	GO_Central		UniProtKB:Q9I215
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I283	PA2032	involved_in	GO:1901605	GO_REF:0000033	IBA	CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000203534|SGD:S000001179|SGD:S000003170|UniProtKB:P09053|UniProtKB:Q8N5Z0	P	HTH gntR-type domain-containing protein	PA2032	protein	taxon:208964	20240801	GO_Central		UniProtKB:Q9I283
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I371	PA1654	involved_in	GO:1901605	GO_REF:0000033	IBA	CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000203534|SGD:S000001179|SGD:S000003170|UniProtKB:P09053|UniProtKB:Q8N5Z0	P	Aminotransferase class I/classII large domain-containing protein	PA1654	protein	taxon:208964	20240801	GO_Central		UniProtKB:Q9I371
`
* ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:1901605) -- `UniProtKB	Q9I4R3	cds1	involved_in	GO:1901605	GO_REF:0000117	IEA	ARBA:ARBA00026968	P	L-cysteine desulfhydrase Cds1	cds1|PA1061	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I4R3
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008785) -- `UniProtKB	Q9HY81	PA3529	enables	GO:0008785	PMID:21674802	IDA		F	Thioredoxin peroxidase	PA3529	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HY81
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0009255) -- `UniProtKB	O68283	eda	involved_in	GO:0009255	GO_REF:0000033	IBA	PANTHER:PTN000767078|UniProtKB:P0A955	P	2-dehydro-3-deoxy-phosphogluconate aldolase	eda|PA3181	protein	taxon:208964	20240912	GO_Central		UniProtKB:O68283
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0009255) -- `UniProtKB	P31961	edd	involved_in	GO:0009255	GO_REF:0000002	IEA	InterPro:IPR004786	P	Phosphogluconate dehydratase	edd|PA3194	protein	taxon:208964	20260428	InterPro		UniProtKB:P31961
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0009255) -- `UniProtKB	P31961	edd	involved_in	GO:0009255	GO_REF:0000041	IEA	UniPathway:UPA00226	P	Phosphogluconate dehydratase	edd|PA3194	protein	taxon:208964	20260227	UniProt		UniProtKB:P31961
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0009255) -- `UniProtKB	P31961	edd	involved_in	GO:0009255	GO_REF:0000104	IEA	UniRule:UR000683091	P	Phosphogluconate dehydratase	edd|PA3194	protein	taxon:208964	20260428	UniProt		UniProtKB:P31961
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0009255) -- `UniProtKB	Q9HZ93	PA3131	involved_in	GO:0009255	GO_REF:0000033	IBA	PANTHER:PTN000767078|UniProtKB:P0A955	P	2-dehydro-3-deoxy-phosphogluconate aldolase	PA3131	protein	taxon:208964	20240912	GO_Central		UniProtKB:Q9HZ93
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019251) -- `UniProtKB	Q9HZT9	cbiD	involved_in	GO:0019251	GO_REF:0000104	IEA	UniRule:UR000001336	P	Cobalt-precorrin-5B C(1)-methyltransferase	cbiD|PA2908	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HZT9
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ0	betI	involved_in	GO:0019285	GO_REF:0000041	IEA	UniPathway:UPA00529	P	HTH-type transcriptional regulator BetI	betI|PA5374	protein	taxon:208964	20260227	UniProt		UniProtKB:Q9HTJ0
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ0	betI	involved_in	GO:0019285	GO_REF:0000104	IEA	UniRule:UR000100081	P	HTH-type transcriptional regulator BetI	betI|PA5374	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HTJ0
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ1	betB	involved_in	GO:0019285	GO_REF:0000002	IEA	InterPro:IPR011264	P	NAD/NADP-dependent betaine aldehyde dehydrogenase	betB|PA5373	protein	taxon:208964	20260428	InterPro		UniProtKB:Q9HTJ1
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ1	betB	involved_in	GO:0019285	GO_REF:0000041	IEA	UniPathway:UPA00529	P	NAD/NADP-dependent betaine aldehyde dehydrogenase	betB|PA5373	protein	taxon:208964	20260227	UniProt		UniProtKB:Q9HTJ1
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ1	betB	involved_in	GO:0019285	GO_REF:0000104	IEA	UniRule:UR000100232	P	NAD/NADP-dependent betaine aldehyde dehydrogenase	betB|PA5373	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HTJ1
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ2	betA	involved_in	GO:0019285	GO_REF:0000002	IEA	InterPro:IPR011533	P	Oxygen-dependent choline dehydrogenase	betA|PA5372	protein	taxon:208964	20260428	InterPro		UniProtKB:Q9HTJ2
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ2	betA	involved_in	GO:0019285	GO_REF:0000033	IBA	PANTHER:PTN001694860|UniProtKB:P17444	P	Oxygen-dependent choline dehydrogenase	betA|PA5372	protein	taxon:208964	20200626	GO_Central		UniProtKB:Q9HTJ2
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ2	betA	involved_in	GO:0019285	GO_REF:0000041	IEA	UniPathway:UPA00529	P	Oxygen-dependent choline dehydrogenase	betA|PA5372	protein	taxon:208964	20260227	UniProt		UniProtKB:Q9HTJ2
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9HTJ2	betA	involved_in	GO:0019285	GO_REF:0000104	IEA	UniRule:UR000100055	P	Oxygen-dependent choline dehydrogenase	betA|PA5372	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HTJ2
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019285) -- `UniProtKB	Q9I1Z1	PA2124	involved_in	GO:0019285	GO_REF:0000033	IBA	PANTHER:PTN001694860|UniProtKB:P17444	P	Glucose-methanol-choline oxidoreductase N-terminal domain-containing protein	PA2124	protein	taxon:208964	20200626	GO_Central		UniProtKB:Q9I1Z1
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019379) -- `UniProtKB	O05927	cysH	involved_in	GO:0019379	GO_REF:0000002	IEA	InterPro:IPR004511	P	Adenosine 5'-phosphosulfate reductase	cysH|PA1756	protein	taxon:208964	20260428	InterPro		UniProtKB:O05927
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019379) -- `UniProtKB	O05927	cysH	involved_in	GO:0019379	GO_REF:0000104	IEA	UniRule:UR000037451	P	Adenosine 5'-phosphosulfate reductase	cysH|PA1756	protein	taxon:208964	20260428	UniProt		UniProtKB:O05927
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0033543) -- `UniProtKB	Q9HUH9	PA4986	involved_in	GO:0033543	GO_REF:0000033	IBA	PANTHER:PTN000527853|UniProtKB:P42593	P	Probable oxidoreductase	PA4986	protein	taxon:208964	20170228	GO_Central		UniProtKB:Q9HUH9
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0033543) -- `UniProtKB	Q9HUZ6	fadH2	involved_in	GO:0033543	GO_REF:0000033	IBA	PANTHER:PTN000527853|UniProtKB:P42593	P	2,4-dienoyl-CoA reductase FadH2	fadH2|PA4814	protein	taxon:208964	20170228	GO_Central		UniProtKB:Q9HUZ6
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0033543) -- `UniProtKB	Q9HZB6	fadH1	involved_in	GO:0033543	GO_REF:0000033	IBA	PANTHER:PTN000527853|UniProtKB:P42593	P	2,4-dienoyl-CoA reductase FadH1	fadH1|PA3092	protein	taxon:208964	20170228	GO_Central		UniProtKB:Q9HZB6
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0043640) -- `UniProtKB	P20586	pobA	involved_in	GO:0043640	GO_REF:0000041	IEA	UniPathway:UPA00156	P	p-hydroxybenzoate hydroxylase	pobA|PA0247	protein	taxon:208964	20260227	UniProt		UniProtKB:P20586
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0051483) -- `UniProtKB	P57708	ispF	involved_in	GO:0051483	GO_REF:0000033	IBA	PANTHER:PTN000781796|UniProtKB:P9WKG5	P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	ispF|PA3627	protein	taxon:208964	20250919	GO_Central		UniProtKB:P57708
`
* WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0070221) -- `UniProtKB	Q9I1D3	PA2345	involved_in	GO:0070221	GO_REF:0000033	IBA	PANTHER:PTN000066985|UniProtKB:Q9Y6N5	P	FAD/NAD(P)-binding domain-containing protein	PA2345	protein	taxon:208964	20180308	GO_Central		UniProtKB:Q9I1D3
`
### gorule-0000022

Check for, and filter, annotations made to retracted publications

* total: 0
### gorule-0000027

Each identifier in GAF is valid

* total: 313
#### Messages
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:10198009	IMP		F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:10198009	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:10464217	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:15175298	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:19850617	IMP		F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0000976	PMID:9286981	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001216	PMID:10198009	IMP		F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001216	PMID:10198009	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001216	PMID:10464217	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001216	PMID:19850617	IMP		F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001216	PMID:9286981	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	enables	GO:0001217	PMID:15175298	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	involved_in	GO:0045893	PMID:10464217	EXP		P	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	involved_in	GO:0045893	PMID:9286981	EXP		P	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:10198009	IMP		C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:10198009	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:10464217	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:15175298	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:19850617	IMP		C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU2	argR	part_of	GO:0032993	PMID:9286981	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator ArgR	argR|PA0893	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU9	mexZ	enables	GO:0000976	PMID:19589837	IMP		F	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU9	mexZ	enables	GO:0001217	PMID:19589837	IMP		F	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU9	mexZ	involved_in	GO:0045892	PMID:19589837	IDA		P	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU9	mexZ	involved_in	GO:0045892	PMID:19589837	IEP		P	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCU9	mexZ	part_of	GO:0032993	PMID:19589837	IMP		C	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCU9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0000976	PMID:12218010	IMP		F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0000976	PMID:12218010	IPI	RefSeq:NC_002516.2	F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0000976	PMID:22581773	IMP		F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0000976	PMID:22581773	IPI	RefSeq:NC_002516.2	F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001216	PMID:12218010	IMP		F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001216	PMID:12218010	IPI	RefSeq:NC_002516.2	F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001216	PMID:22581773	IMP		F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001216	PMID:22581773	IPI	RefSeq:NC_002516.2	F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001217	PMID:22581773	IMP		F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	enables	GO:0001217	PMID:22581773	IPI	RefSeq:NC_002516.2	F	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	part_of	GO:0032993	PMID:12218010	IMP		C	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	part_of	GO:0032993	PMID:12218010	IPI	RefSeq:NC_002516.2	C	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	part_of	GO:0032993	PMID:22581773	IMP		C	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV0	fleQ	part_of	GO:0032993	PMID:22581773	IPI	RefSeq:NC_002516.2	C	Transcriptional regulator FleQ	fleQ|PA1097	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV1	pvdS	enables	GO:0000976	PMID:11222621	IMP		F	Sigma factor PvdS	pvdS|PA2426	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV1	pvdS	enables	GO:0001216	PMID:11222621	IMP		F	Sigma factor PvdS	pvdS|PA2426	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV1	pvdS	involved_in	GO:0045893	PMID:11222621	IDA		P	Sigma factor PvdS	pvdS|PA2426	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV1	pvdS	involved_in	GO:0071281	PMID:8633080	EXP		P	Sigma factor PvdS	pvdS|PA2426	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCV1	pvdS	part_of	GO:0032993	PMID:11222621	IMP		C	Sigma factor PvdS	pvdS|PA2426	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCV1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCW6	dnr	enables	GO:0000976	PMID:19477902	IMP		F	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCW6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCW6	dnr	enables	GO:0001216	PMID:19477902	IMP		F	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCW6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCW6	dnr	involved_in	GO:0045893	PMID:19477902	IEP		P	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCW6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCW6	dnr	part_of	GO:0032993	PMID:19477902	IMP		C	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCW6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	enables	GO:0000976	PMID:15968052	IPI	RefSeq:NC_002516.2	F	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	enables	GO:0001217	PMID:15968052	IPI	RefSeq:NC_002516.2	F	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	enables	GO:0043565	PMID:22511872	EXP		F	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	enables	GO:0043565	PMID:22511872	IDA		F	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	enables	GO:0043565	PMID:22511872	IMP		F	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	involved_in	GO:0045892	PMID:23354748	EXP		P	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	involved_in	GO:0045892	PMID:23354748	IEP		P	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	part_of	GO:0032993	PMID:15968052	IPI	RefSeq:NC_002516.2	C	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	part_of	GO:0032993	PMID:22511872	EXP		C	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	part_of	GO:0032993	PMID:22511872	IDA		C	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCY4	amrZ	part_of	GO:0032993	PMID:22511872	IMP		C	Transcription factor AmrZ	amrZ|PA3385	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCY4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XCZ8	pigA	involved_in	GO:0071281	PMID:8633080	EXP		P	Heme oxygenase PigA	pigA|PA0672	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XCZ8
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0000976	PMID:16159785	IMP		F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0000976	PMID:16390453	IMP		F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0000976	PMID:16390453	IPI	RefSeq:NC_002516.2	F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0001216	PMID:16159785	IMP		F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0001216	PMID:16390453	IMP		F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	enables	GO:0001216	PMID:16390453	IPI	RefSeq:NC_002516.2	F	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	part_of	GO:0032993	PMID:16159785	IMP		C	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	part_of	GO:0032993	PMID:16390453	IMP		C	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD77	qscR	part_of	GO:0032993	PMID:16390453	IPI	RefSeq:NC_002516.2	C	HTH luxR-type domain-containing protein	qscR|PA1898	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD77
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0000976	PMID:16385073	IPI	RefSeq:NC_002516.2	F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0000976	PMID:17172347	IMP		F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0000976	PMID:18045385	IPI	RefSeq:NC_002516.2	F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0001217	PMID:16385073	IPI	RefSeq:NC_002516.2	F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0001217	PMID:17172347	IMP		F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	enables	GO:0001217	PMID:18045385	IPI	RefSeq:NC_002516.2	F	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	involved_in	GO:0045892	PMID:17172347	IEP		P	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	part_of	GO:0032993	PMID:16385073	IPI	RefSeq:NC_002516.2	C	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	part_of	GO:0032993	PMID:17172347	IMP		C	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD78	rsaL	part_of	GO:0032993	PMID:18045385	IPI	RefSeq:NC_002516.2	C	RsaL-like HTH domain-containing protein	rsaL|PA1431	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD78
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0000976	PMID:10438759	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0000976	PMID:10894751	IMP		F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0000976	PMID:10894751	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0000976	PMID:22844393	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0001217	PMID:10438759	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0001217	PMID:10894751	IMP		F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0001217	PMID:10894751	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	enables	GO:0001217	PMID:22844393	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	part_of	GO:0032993	PMID:10438759	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	part_of	GO:0032993	PMID:10894751	IMP		C	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	part_of	GO:0032993	PMID:10894751	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD97	ptxS	part_of	GO:0032993	PMID:22844393	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator PtxS	ptxS|PA2259	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD97
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	G3XD99	PA4471	involved_in	GO:0071281	PMID:9045799	IEP		P	FagA protein	PA4471	protein	taxon:208964	20170328	CollecTF		UniProtKB:G3XD99
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P11720	trpI	enables	GO:0043565	PMID:2107533	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator TrpI	trpI|PA0037	protein	taxon:208964	20170328	CollecTF		UniProtKB:P11720
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P11720	trpI	part_of	GO:0032993	PMID:2107533	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator TrpI	trpI|PA0037	protein	taxon:208964	20170328	CollecTF		UniProtKB:P11720
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P14756	lasB	enables	GO:0004175	PMID:33510733	IDA		F	Elastase	lasB|PA3724	protein	taxon:208964	20230711	PHI-base		UniProtKB:P14756
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P23620	phoB	involved_in	GO:0045893	PMID:16238634	IEP		P	Phosphate regulon transcriptional regulatory protein PhoB	phoB|PA5360	protein	taxon:208964	20170328	CollecTF		UniProtKB:P23620
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0000976	PMID:11544214	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0000976	PMID:16735731	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0000976	PMID:17449616	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0000976	PMID:20233934	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0000976	PMID:8576049	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0001216	PMID:11544214	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0001216	PMID:16735731	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0001216	PMID:17449616	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0001216	PMID:20233934	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0001216	PMID:8576049	IMP		F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0043565	PMID:15505212	IPI	RefSeq:NC_002516.2	F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	enables	GO:0043565	PMID:18045385	IPI	RefSeq:NC_002516.2	F	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	involved_in	GO:0045893	PMID:12076794	IEP		P	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:11544214	IMP		C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:15505212	IPI	RefSeq:NC_002516.2	C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:16735731	IMP		C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:17449616	IMP		C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:18045385	IPI	RefSeq:NC_002516.2	C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:20233934	IMP		C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P25084	lasR	part_of	GO:0032993	PMID:8576049	IMP		C	Transcriptional activator protein LasR	lasR|PA1430	protein	taxon:208964	20170328	CollecTF		UniProtKB:P25084
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0000976	PMID:17766417	IMP		F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0000976	PMID:18178737	IPI	RefSeq:NC_002516.2	F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0001216	PMID:18178737	IPI	RefSeq:NC_002516.2	F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0001217	PMID:17766417	IMP		F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0043565	PMID:1900366	IPI	RefSeq:NC_002516.2	F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	enables	GO:0043565	PMID:1907266	IPI	RefSeq:NC_002516.2	F	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	involved_in	GO:0006355	PMID:15466037	EXP		P	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	involved_in	GO:0045892	PMID:15317771	EXP		P	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	involved_in	GO:0045892	PMID:15317771	IEP		P	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	involved_in	GO:0045893	PMID:15317771	EXP		P	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	involved_in	GO:0045893	PMID:18178737	EXP		P	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	part_of	GO:0032993	PMID:17766417	IMP		C	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	part_of	GO:0032993	PMID:18178737	IPI	RefSeq:NC_002516.2	C	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	part_of	GO:0032993	PMID:1900366	IPI	RefSeq:NC_002516.2	C	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26275	algR	part_of	GO:0032993	PMID:1907266	IPI	RefSeq:NC_002516.2	C	Positive alginate biosynthesis regulatory protein	algR|PA5261	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26275
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	enables	GO:0000976	PMID:22408165	IMP		F	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	enables	GO:0001216	PMID:22408165	IMP		F	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	enables	GO:0043565	PMID:18373522	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	enables	GO:0043565	PMID:19376850	IMP		F	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	part_of	GO:0032993	PMID:18373522	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	part_of	GO:0032993	PMID:19376850	IMP		C	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P26993	exsA	part_of	GO:0032993	PMID:22408165	IMP		C	HTH-type transcriptional regulator ExsA	exsA|PA1713	protein	taxon:208964	20170328	CollecTF		UniProtKB:P26993
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P32265	nfxB	enables	GO:0000976	PMID:7592337	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20170328	CollecTF		UniProtKB:P32265
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P32265	nfxB	enables	GO:0001217	PMID:7592337	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20170328	CollecTF		UniProtKB:P32265
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P32265	nfxB	part_of	GO:0032993	PMID:7592337	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20170328	CollecTF		UniProtKB:P32265
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P37452	lexA	involved_in	GO:0009432	PMID:15458417	EXP		P	LexA repressor	lexA|PA3007	protein	taxon:208964	20170328	CollecTF		UniProtKB:P37452
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P37452	lexA	involved_in	GO:0045892	PMID:15458417	EXP		P	LexA repressor	lexA|PA3007	protein	taxon:208964	20170328	CollecTF		UniProtKB:P37452
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P40883	pchR	enables	GO:0000976	PMID:16194235	IMP		F	Regulatory protein PchR	pchR|PA4227	protein	taxon:208964	20170328	CollecTF		UniProtKB:P40883
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P40883	pchR	enables	GO:0001216	PMID:16194235	IMP		F	Regulatory protein PchR	pchR|PA4227	protein	taxon:208964	20170328	CollecTF		UniProtKB:P40883
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P40883	pchR	enables	GO:0001217	PMID:16194235	IMP		F	Regulatory protein PchR	pchR|PA4227	protein	taxon:208964	20170328	CollecTF		UniProtKB:P40883
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P40883	pchR	part_of	GO:0032993	PMID:16194235	IMP		C	Regulatory protein PchR	pchR|PA4227	protein	taxon:208964	20170328	CollecTF		UniProtKB:P40883
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P49988	rpoN	enables	GO:0000976	PMID:20869215	IMP		F	RNA polymerase sigma-54 factor	rpoN|PA4462	protein	taxon:208964	20170328	CollecTF		UniProtKB:P49988
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P49988	rpoN	enables	GO:0001216	PMID:20869215	IMP		F	RNA polymerase sigma-54 factor	rpoN|PA4462	protein	taxon:208964	20170328	CollecTF		UniProtKB:P49988
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P49988	rpoN	part_of	GO:0032993	PMID:20869215	IMP		C	RNA polymerase sigma-54 factor	rpoN|PA4462	protein	taxon:208964	20170328	CollecTF		UniProtKB:P49988
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P52003	mexR	enables	GO:0000976	PMID:11208776	IPI	RefSeq:NC_002516.2	F	Multidrug resistance operon repressor	mexR|PA0424	protein	taxon:208964	20170328	CollecTF		UniProtKB:P52003
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P52003	mexR	enables	GO:0001217	PMID:11208776	IPI	RefSeq:NC_002516.2	F	Multidrug resistance operon repressor	mexR|PA0424	protein	taxon:208964	20170328	CollecTF		UniProtKB:P52003
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P52003	mexR	involved_in	GO:0045892	PMID:11208776	EXP		P	Multidrug resistance operon repressor	mexR|PA0424	protein	taxon:208964	20170328	CollecTF		UniProtKB:P52003
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P52003	mexR	part_of	GO:0032993	PMID:11208776	IPI	RefSeq:NC_002516.2	C	Multidrug resistance operon repressor	mexR|PA0424	protein	taxon:208964	20170328	CollecTF		UniProtKB:P52003
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P54291	rhlI	enables	GO:0061579	PMID:28715477	TAS		F	Acyl-homoserine-lactone synthase	rhlI|vsmI|PA3476	protein	taxon:208964	20190819	PHI-base	part_of(GO:0120218)	UniProtKB:P54291
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P54291	rhlI	involved_in	GO:0120218	PMID:28715477	TAS		P	Acyl-homoserine-lactone synthase	rhlI|vsmI|PA3476	protein	taxon:208964	20190819	PHI-base		UniProtKB:P54291
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0000976	PMID:16735731	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0000976	PMID:22262098	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0000976	PMID:24935161	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0001216	PMID:22262098	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0001216	PMID:24935161	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	enables	GO:0001217	PMID:16735731	IMP		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P54292	rhlR	enables	GO:0003700	PMID:28715477	TAS		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20191106	PHI-base	part_of(GO:0120218)	UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P54292	rhlR	enables	GO:0038023	PMID:28715477	TAS		F	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20190819	PHI-base	has_input(CHEBI:17289),part_of(GO:0120218)	UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	involved_in	GO:0045893	PMID:11053384	IEP		P	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	involved_in	GO:0045893	PMID:11359576	EXP		P	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	P54292	rhlR	involved_in	GO:0062162	PMID:28715477	IMP		P	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20190819	PHI-base		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	part_of	GO:0032993	PMID:16735731	IMP		C	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	part_of	GO:0032993	PMID:22262098	IMP		C	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P54292	rhlR	part_of	GO:0032993	PMID:24935161	IMP		C	HTH-type quorum-sensing regulator RhlR	rhlR|lasM|vsmR|PA3477	protein	taxon:208964	20170328	CollecTF		UniProtKB:P54292
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:12218009	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:12218009	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:18227247	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:19801409	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:20494996	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0000976	PMID:9190808	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001216	PMID:18227247	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001216	PMID:19801409	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001216	PMID:20494996	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001216	PMID:9190808	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001217	PMID:12218009	IMP		F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0001217	PMID:12218009	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	enables	GO:0043565	PMID:17159200	IPI	RefSeq:NC_002516.2	F	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	involved_in	GO:0045893	PMID:20494996	IDA		P	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:12218009	IMP		C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:12218009	IPI	RefSeq:NC_002516.2	C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:17159200	IPI	RefSeq:NC_002516.2	C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:18227247	IPI	RefSeq:NC_002516.2	C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:19801409	IMP		C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:20494996	IPI	RefSeq:NC_002516.2	C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P55222	vfr	part_of	GO:0032993	PMID:9190808	IMP		C	cAMP-activated global transcriptional regulator Vfr	vfr|PA0652	protein	taxon:208964	20170328	CollecTF		UniProtKB:P55222
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P72131	ptxR	enables	GO:0000976	PMID:22844393	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxR	ptxR|PA2258	protein	taxon:208964	20170328	CollecTF		UniProtKB:P72131
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P72131	ptxR	enables	GO:0001216	PMID:22844393	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator PtxR	ptxR|PA2258	protein	taxon:208964	20170328	CollecTF		UniProtKB:P72131
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	P72131	ptxR	part_of	GO:0032993	PMID:22844393	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator PtxR	ptxR|PA2258	protein	taxon:208964	20170328	CollecTF		UniProtKB:P72131
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0000976	PMID:10658665	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0000976	PMID:8633080	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0000976	PMID:9045799	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0001217	PMID:10658665	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0001217	PMID:8633080	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	enables	GO:0001217	PMID:9045799	IPI	RefSeq:NC_002516.2	F	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	involved_in	GO:0045892	PMID:10658665	EXP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	involved_in	GO:0045892	PMID:15210934	IEP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	involved_in	GO:0045892	PMID:21546589	EXP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	involved_in	GO:0045892	PMID:8633080	EXP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	involved_in	GO:0045892	PMID:9045799	IEP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	part_of	GO:0032993	PMID:10658665	IPI	RefSeq:NC_002516.2	C	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	part_of	GO:0032993	PMID:8633080	IPI	RefSeq:NC_002516.2	C	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q03456	fur	part_of	GO:0032993	PMID:9045799	IPI	RefSeq:NC_002516.2	C	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q03456
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q06198	algU	enables	GO:0000976	PMID:14645293	IMP		F	RNA polymerase sigma-H factor	algU|algT|PA0762	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q06198
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q06198	algU	enables	GO:0001216	PMID:14645293	IMP		F	RNA polymerase sigma-H factor	algU|algT|PA0762	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q06198
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q06198	algU	involved_in	GO:0045893	PMID:11807066	IEP		P	RNA polymerase sigma-H factor	algU|algT|PA0762	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q06198
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q06198	algU	involved_in	GO:0045893	PMID:14645293	IEP		P	RNA polymerase sigma-H factor	algU|algT|PA0762	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q06198
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q06198	algU	part_of	GO:0032993	PMID:14645293	IMP		C	RNA polymerase sigma-H factor	algU|algT|PA0762	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q06198
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51423	pmpR	involved_in	GO:0071281	PMID:8633080	EXP		P	Transcriptional regulatory protein PmpR	pmpR|PA0964	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51423
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	enables	GO:0000976	PMID:8051019	IMP		F	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	enables	GO:0000976	PMID:8051019	IPI	RefSeq:NC_002516.2	F	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	enables	GO:0001216	PMID:8051019	IMP		F	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	enables	GO:0001216	PMID:8051019	IPI	RefSeq:NC_002516.2	F	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	involved_in	GO:0045893	PMID:8051019	IEP		P	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	part_of	GO:0032993	PMID:8051019	IMP		C	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q51472	ihfA	part_of	GO:0032993	PMID:8051019	IPI	RefSeq:NC_002516.2	C	Integration host factor subunit alpha	ihfA|himA|PA2738	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q51472
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	Q51559	rhlA	involved_in	GO:0106236	PMID:28715477	IMP		P	3-(3-hydroxydecanoyloxy)decanoate synthase	rhlA|PA3479	protein	taxon:208964	20190911	PHI-base		UniProtKB:Q51559
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTI4	gbdR	enables	GO:0000976	PMID:19103776	IMP		F	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTI4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTI4	gbdR	enables	GO:0001216	PMID:19103776	IMP		F	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTI4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTI4	gbdR	involved_in	GO:0045893	PMID:19103776	EXP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTI4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTI4	gbdR	involved_in	GO:0045893	PMID:19103776	IEP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTI4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTI4	gbdR	part_of	GO:0032993	PMID:19103776	IMP		C	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTI4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTL4	oxyR	enables	GO:0043565	PMID:19933365	IPI	RefSeq:NC_008463.1	F	HTH lysR-type domain-containing protein	oxyR|PA5344	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTL4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTL4	oxyR	involved_in	GO:0006355	PMID:22275523	EXP		P	HTH lysR-type domain-containing protein	oxyR|PA5344	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTL4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HTL4	oxyR	part_of	GO:0032993	PMID:19933365	IPI	RefSeq:NC_008463.1	C	HTH lysR-type domain-containing protein	oxyR|PA5344	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HTL4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUS3	desT	enables	GO:0000976	PMID:17877713	IPI	RefSeq:NC_002516.2	F	HTH tetR-type domain-containing protein	desT|PA4890	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUS3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUS3	desT	enables	GO:0001217	PMID:17877713	IPI	RefSeq:NC_002516.2	F	HTH tetR-type domain-containing protein	desT|PA4890	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUS3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUS3	desT	involved_in	GO:0045892	PMID:17877713	EXP		P	HTH tetR-type domain-containing protein	desT|PA4890	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUS3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUS3	desT	part_of	GO:0032993	PMID:17877713	IPI	RefSeq:NC_002516.2	C	HTH tetR-type domain-containing protein	desT|PA4890	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUS3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUT5	brlR	enables	GO:0000976	PMID:24612375	IMP		F	Transcriptional regulator BrlR	brlR|PA4878	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUT5
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUT5	brlR	enables	GO:0001216	PMID:24612375	IMP		F	Transcriptional regulator BrlR	brlR|PA4878	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUT5
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HUT5	brlR	part_of	GO:0032993	PMID:24612375	IMP		C	Transcriptional regulator BrlR	brlR|PA4878	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HUT5
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV39	PA4769	enables	GO:0043565	PMID:22408166	IMP		F	Pyruvate dehydrogenase complex repressor	PA4769	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV39
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV39	PA4769	part_of	GO:0032993	PMID:22408166	IMP		C	Pyruvate dehydrogenase complex repressor	PA4769	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV39
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV73	cbrB	enables	GO:0000976	PMID:21478360	IMP		F	Alginate biosynthesis transcriptional regulatory protein AlgB	cbrB|PA4726	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV73
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV73	cbrB	enables	GO:0001216	PMID:21478360	IMP		F	Alginate biosynthesis transcriptional regulatory protein AlgB	cbrB|PA4726	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV73
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV73	cbrB	part_of	GO:0032993	PMID:21478360	IMP		C	Alginate biosynthesis transcriptional regulatory protein AlgB	cbrB|PA4726	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV73
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HV88	phuR	involved_in	GO:0071281	PMID:10658665	EXP		P	Heme/hemoglobin uptake outer membrane receptor PhuR	phuR|PA4710	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HV88
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HVF7	PA4634	involved_in	GO:0071281	PMID:8633080	EXP		P	Abasic site processing protein	PA4634	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HVF7
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HVQ7	piuC	involved_in	GO:0071281	PMID:8633080	EXP		P	PKHD-type hydroxylase PiuC	piuC|PA4515	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HVQ7
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HVQ8	PA4513	involved_in	GO:0071281	PMID:8633080	EXP		P	Probable oxidoreductase	PA4513	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HVQ8
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HW47	PA4354	involved_in	GO:0045892	PMID:22820840	EXP		P	HTH arsR-type domain-containing protein	PA4354	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HW47
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HW86	mvaT	enables	GO:0000976	PMID:15528665	IPI	RefSeq:NC_002516.2	F	MvaT DNA-binding domain-containing protein	mvaT|PA4315	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HW86
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HW86	mvaT	enables	GO:0001216	PMID:15528665	IPI	RefSeq:NC_002516.2	F	MvaT DNA-binding domain-containing protein	mvaT|PA4315	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HW86
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HW86	mvaT	involved_in	GO:0045893	PMID:15528665	EXP		P	MvaT DNA-binding domain-containing protein	mvaT|PA4315	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HW86
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HW86	mvaT	part_of	GO:0032993	PMID:15528665	IPI	RefSeq:NC_002516.2	C	MvaT DNA-binding domain-containing protein	mvaT|PA4315	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HW86
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HWM5	PA4156	involved_in	GO:0071281	PMID:21546589	EXP		P	Probable TonB-dependent receptor	PA4156	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HWM5
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXD3	narL	enables	GO:0000976	PMID:18832311	IMP		F	Two-component response regulator NarL	narL|PA3879	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXD3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXD3	narL	enables	GO:0001217	PMID:18832311	IMP		F	Two-component response regulator NarL	narL|PA3879	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXD3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXD3	narL	involved_in	GO:0045892	PMID:18832311	IDA		P	Two-component response regulator NarL	narL|PA3879	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXD3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXD3	narL	involved_in	GO:0045892	PMID:18832311	IEP		P	Two-component response regulator NarL	narL|PA3879	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXD3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXD3	narL	part_of	GO:0032993	PMID:18832311	IMP		C	Two-component response regulator NarL	narL|PA3879	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXD3
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXI7	iscR	involved_in	GO:0045892	PMID:22609922	IEP		P	IscR	iscR|PA3815	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXI7
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXI7	iscR	involved_in	GO:0045892	PMID:24466226	EXP		P	IscR	iscR|PA3815	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXI7
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXW2	PA3678	enables	GO:0000976	PMID:15855505	IPI	RefSeq:NC_002516.2	F	HTH tetR-type domain-containing protein	PA3678	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXW2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXW2	PA3678	enables	GO:0001217	PMID:15855505	IPI	RefSeq:NC_002516.2	F	HTH tetR-type domain-containing protein	PA3678	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXW2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HXW2	PA3678	part_of	GO:0032993	PMID:15855505	IPI	RefSeq:NC_002516.2	C	HTH tetR-type domain-containing protein	PA3678	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HXW2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HYJ5	PA3410	involved_in	GO:0071281	PMID:8633080	EXP		P	Probable sigma-70 factor, ECF subfamily	PA3410	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HYJ5
`
* WARNING - Invalid identifier: GORULE:0000027: PHI-base is not present in groups reference (PHI-base) -- `UniProtKB	Q9HZE4	pelA	involved_in	GO:0000271	PMID:28715477	TAS		P	Glycoside-hydrolase family GH114 TIM-barrel domain-containing protein	pelA|PA3064	protein	taxon:208964	20190911	PHI-base		UniProtKB:Q9HZE4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZJ8	sulA	involved_in	GO:0009432	PMID:15458417	EXP		P	Cell division inhibitor SulA	sulA|PA3008	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZJ8
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZJ9	psrA	involved_in	GO:0045892	PMID:15899403	IDA		P	HTH tetR-type domain-containing protein	psrA|PA3006	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZJ9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZJ9	psrA	involved_in	GO:0045892	PMID:18524913	EXP		P	HTH tetR-type domain-containing protein	psrA|PA3006	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZJ9
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZR6	cifR	enables	GO:0000976	PMID:22843844	IMP		F	HTH tetR-type domain-containing protein	cifR|PA2931	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZR6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZR6	cifR	enables	GO:0001217	PMID:22843844	IMP		F	HTH tetR-type domain-containing protein	cifR|PA2931	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZR6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZR6	cifR	involved_in	GO:0045892	PMID:22843844	EXP		P	HTH tetR-type domain-containing protein	cifR|PA2931	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZR6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZR6	cifR	involved_in	GO:0045892	PMID:22843844	IEP		P	HTH tetR-type domain-containing protein	cifR|PA2931	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZR6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZR6	cifR	part_of	GO:0032993	PMID:22843844	IMP		C	HTH tetR-type domain-containing protein	cifR|PA2931	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZR6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	enables	GO:0000976	PMID:20139188	IMP		F	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	enables	GO:0000976	PMID:20139188	IPI	RefSeq:NC_002516.2	F	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	enables	GO:0001217	PMID:20139188	IMP		F	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	enables	GO:0001217	PMID:20139188	IPI	RefSeq:NC_002516.2	F	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	involved_in	GO:0045892	PMID:20139188	EXP		P	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	involved_in	GO:0045892	PMID:20139188	IEP		P	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	part_of	GO:0032993	PMID:20139188	IMP		C	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9HZZ4	ohrR	part_of	GO:0032993	PMID:20139188	IPI	RefSeq:NC_002516.2	C	HTH marR-type domain-containing protein	ohrR|PA2849	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9HZZ4
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I063	PA2780	enables	GO:0000976	PMID:24497189	IPI	RefSeq:NC_002516.2	F	HTH cro/C1-type domain-containing protein	PA2780	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I063
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I063	PA2780	enables	GO:0001216	PMID:24497189	IPI	RefSeq:NC_002516.2	F	HTH cro/C1-type domain-containing protein	PA2780	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I063
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I063	PA2780	involved_in	GO:0045893	PMID:24497189	EXP		P	HTH cro/C1-type domain-containing protein	PA2780	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I063
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I063	PA2780	part_of	GO:0032993	PMID:24497189	IPI	RefSeq:NC_002516.2	C	HTH cro/C1-type domain-containing protein	PA2780	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I063
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0K1	nuoA2	involved_in	GO:0071281	PMID:8633080	EXP		P	NADH-quinone oxidoreductase subunit A 2	nuoA2|PA2637	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0K1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	enables	GO:0000976	PMID:22505688	IMP		F	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	enables	GO:0000976	PMID:22505688	IPI	RefSeq:NC_002516.2	F	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	enables	GO:0001217	PMID:22505688	IMP		F	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	enables	GO:0001217	PMID:22505688	IPI	RefSeq:NC_002516.2	F	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	part_of	GO:0032993	PMID:22505688	IMP		C	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0P6	PA2591	part_of	GO:0032993	PMID:22505688	IPI	RefSeq:NC_002516.2	C	HTH luxR-type domain-containing protein	PA2591	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0P6
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	enables	GO:0000976	PMID:19846594	IMP		F	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	enables	GO:0000976	PMID:20727012	IMP		F	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	enables	GO:0001216	PMID:19846594	IMP		F	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	enables	GO:0001216	PMID:20727012	IMP		F	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	involved_in	GO:0045893	PMID:19846594	EXP		P	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	part_of	GO:0032993	PMID:19846594	IMP		C	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I0Z0	mexT	part_of	GO:0032993	PMID:20727012	IMP		C	Transcriptional regulator MexT	mexT|nfxC|PA2492	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I0Z0
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	enables	GO:0000976	PMID:25034696	IMP		F	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	enables	GO:0000976	PMID:25034696	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	enables	GO:0001216	PMID:25034696	IMP		F	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	enables	GO:0001216	PMID:25034696	IPI	RefSeq:NC_002516.2	F	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	involved_in	GO:0045893	PMID:25034696	EXP		P	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	involved_in	GO:0045893	PMID:25034696	IEP		P	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	part_of	GO:0032993	PMID:25034696	IMP		C	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1P2	vqsM	part_of	GO:0032993	PMID:25034696	IPI	RefSeq:NC_002516.2	C	HTH-type transcriptional regulator VqsM	vqsM|PA2227	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1P2
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I1R1	PA2206	involved_in	GO:0045893	PMID:23382903	EXP		P	HTH lysR-type domain-containing protein	PA2206	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I1R1
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I423	cyoE2	involved_in	GO:0071281	PMID:8633080	EXP		P	Protoheme IX farnesyltransferase 2	cyoE2|PA1321	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I423
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I516	PA0942	enables	GO:0000976	PMID:19717597	IPI	RefSeq:NC_002516.2	F	HTH marR-type domain-containing protein	PA0942	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I516
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I516	PA0942	enables	GO:0001217	PMID:19717597	IPI	RefSeq:NC_002516.2	F	HTH marR-type domain-containing protein	PA0942	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I516
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I516	PA0942	involved_in	GO:0045892	PMID:19717597	IEP		P	HTH marR-type domain-containing protein	PA0942	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I516
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I516	PA0942	part_of	GO:0032993	PMID:19717597	IPI	RefSeq:NC_002516.2	C	HTH marR-type domain-containing protein	PA0942	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I516
`
* WARNING - Invalid identifier: GORULE:0000027: CollecTF is not present in groups reference (CollecTF) -- `UniProtKB	Q9I529	PA0929	involved_in	GO:0071281	PMID:8633080	EXP		P	Two-component response regulator	PA0929	protein	taxon:208964	20170328	CollecTF		UniProtKB:Q9I529
`
### gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

* total: 0
### gorule-0000029

IEAs should be less than one year old.

* total: 0
### gorule-0000030

Only valid GO_REFs are allowed

* total: 0
### gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

* total: 0
### gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

* total: 0
### gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

* total: 0
### gorule-0000043

Check for valid combination of evidence code, with/from rules and GO_REF

* total: 0
### gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

* total: 16
#### Messages
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	P43898	hemF	enables	GO:0042803	GO_REF:0000024	ISS	UniProtKB:P36551	F	Oxygen-dependent coproporphyrinogen-III oxidase	hemF|PA0024	protein	taxon:208964	20091105	UniProt		UniProtKB:P43898
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	P43898	hemF	enables	GO:0042803	GO_REF:0000104	IEA	UniRule:UR000084069	F	Oxygen-dependent coproporphyrinogen-III oxidase	hemF|PA0024	protein	taxon:208964	20260428	UniProt		UniProtKB:P43898
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	P52477	mexA	involved_in	GO:0051260	PMID:15226509	IMP		P	Multidrug resistance protein MexA	mexA|PA0425	protein	taxon:208964	20161026	CAFA		UniProtKB:P52477
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q51547	phoU	enables	GO:0042803	GO_REF:0000024	ISS	UniProtKB:O67053	F	Phosphate-specific transport system accessory protein PhoU homolog	phoU|PA5365	protein	taxon:208964	20121120	UniProt		UniProtKB:Q51547
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HU05	aroQ	enables	GO:0042803	PMID:11532214	IDA		F	Monofunctional chorismate mutase	aroQ|PA5184	protein	taxon:208964	20120827	UniProt		UniProtKB:Q9HU05
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HV42	grpE	enables	GO:0042803	GO_REF:0000002	IEA	InterPro:IPR000740	F	Protein GrpE	grpE|PA4762	protein	taxon:208964	20260428	InterPro		UniProtKB:Q9HV42
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HVD1	pagL	enables	GO:0042803	PMID:16632613	IDA		F	Lipid A deacylase PagL	pagL|PA4661	protein	taxon:208964	20130531	UniProt		UniProtKB:Q9HVD1
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HWH2	phzM	enables	GO:0042803	PMID:16946471	IDA		F	Phenazine-1-carboxylate N-methyltransferase	phzM|PA4209	protein	taxon:208964	20220730	UniProt		UniProtKB:Q9HWH2
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HWH2	phzM	enables	GO:0042803	PMID:17253782	IDA		F	Phenazine-1-carboxylate N-methyltransferase	phzM|PA4209	protein	taxon:208964	20220730	UniProt		UniProtKB:Q9HWH2
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HWT7	hpaB	enables	GO:0042803	PMID:20000468	IDA		F	4-hydroxyphenylacetate 3-monooxygenase oxygenase component	hpaB|hpaA|PA4091	protein	taxon:208964	20160721	UniProt		UniProtKB:Q9HWT7
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9HXU0	lysS	enables	GO:0042803	GO_REF:0000117	IEA	ARBA:ARBA00027933	F	Lysine--tRNA ligase	lysS|PA3700	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9HXU0
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9I492	lhpD	enables	GO:0042803	GO_REF:0000117	IEA	ARBA:ARBA00027933	F	Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase	lhpD|lhpH|PA1252	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I492
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9I492	lhpD	enables	GO:0042803	PMID:24649405	IDA		F	Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase	lhpD|lhpH|PA1252	protein	taxon:208964	20221022	UniProt		UniProtKB:Q9I492
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9I4D4	PA1204	enables	GO:0042803	PMID:16552139	IDA		F	NAD(P)H-dependent FMN reductase PA1204	PA1204	protein	taxon:208964	20150126	UniProt		UniProtKB:Q9I4D4
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9I5I6	PA0743	involved_in	GO:0051289	PMID:22128181	IDA		P	NAD-dependent L-serine dehydrogenase	PA0743	protein	taxon:208964	20140404	UniProt		UniProtKB:Q9I5I6
`
* WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- `UniProtKB	Q9I614	bioD	enables	GO:0042803	GO_REF:0000117	IEA	ARBA:ARBA00027933	F	ATP-dependent dethiobiotin synthetase BioD	bioD|PA0504	protein	taxon:208964	20260428	UniProt		UniProtKB:Q9I614
`
### gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

* total: 0
### gorule-0000055

References should have only one ID per ID space

* total: 0
### gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

* total: 0
### gorule-0000061

Allowed gene product to term relations (gp2term)

* total: 2
#### Messages
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0001025, RO:0002325. Repaired to RO:0001025 -- `UniProtKB	P04739	pilA	part_of	GO:0005829	PMID:25049409	IDA		C	Type IV major pilin protein PilA	pilA|fimA|PA4525	protein	taxon:208964	20141104	CACAO		UniProtKB:P04739
`
* WARNING - Violates GO Rule: GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0001025, RO:0002325. Repaired to RO:0001025 -- `UniProtKB	P04739	pilA	part_of	GO:0009986	PMID:25049409	IDA		C	Type IV major pilin protein PilA	pilA|fimA|PA4525	protein	taxon:208964	20141116	CACAO		UniProtKB:P04739
`
### gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

* total: 0
### gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

* total: 0
### gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

* total: 32
#### Messages
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	G3XCT7	ampG	involved_in	GO:0033252	PMID:20713660	IMP		P	AmpG	ampG|PA4393	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCT7
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	G3XCU9	mexZ	involved_in	GO:0032410	PMID:15105120	IMP		P	HTH-type transcriptional regulator MexZ	mexZ|PA2020	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCU9
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	G3XCW6	dnr	involved_in	GO:0051353	PMID:9767567	IMP		P	Transcriptional regulator Dnr	dnr|PA0527	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCW6
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	G3XCW9	ampD	involved_in	GO:0033252	PMID:9835532	IMP		P	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	ampD|PA4522	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XCW9
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	G3XD16	PA2523	involved_in	GO:0032411	PMID:14679195	IMP		P	Probable two-component response regulator	PA2523	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:G3XD16
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	O85732	fmt	involved_in	GO:0022898	PMID:19786597	IMP		P	Methionyl-tRNA formyltransferase	fmt|PA0018	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:O85732
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P10932	amiR	involved_in	GO:0051345	PMID:2513374	IMP		P	Aliphatic amidase regulator	amiR|PA3363	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P10932
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P22610	pilD	involved_in	GO:0006480	PMID:23255525	IDA		P	Prepilin leader peptidase/N-methyltransferase	pilD|xcpA|PA4528	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P22610
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P23926	anr	involved_in	GO:0051353	PMID:9767567	IMP		P	Transcriptional activator protein anr	anr|PA1544	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P23926
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P24735	ampC	involved_in	GO:0033252	PMID:8405939	IDA		P	Beta-lactamase	ampC|PA4110	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P24735
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P27017	amiC	involved_in	GO:0051346	PMID:10893220	IDA		P	Aliphatic amidase expression-regulating protein	amiC|PA3364	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P27017
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P32265	nfxB	involved_in	GO:0032410	PMID:20373734	IMP		P	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P32265
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P32265	nfxB	involved_in	GO:0032410	PMID:8878035	IMP		P	HTH-type transcriptional regulator NfxB	nfxB|PA4600	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P32265
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	P53593	sucC	involved_in	GO:0046777	PMID:10671455	IDA		P	Succinate--CoA ligase [ADP-forming] subunit beta	sucC|PA1588	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:P53593
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q03456	fur	involved_in	GO:1901668	PMID:8763923	IMP		P	Ferric uptake regulation protein	fur|PA4764	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q03456
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HT86	ampDh2	involved_in	GO:0033252	PMID:23510438	IDA		P	N-acetylmuramoyl-L-alanine amidase	ampDh2|PA5485	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT86
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HT99	armZ	involved_in	GO:0032411	PMID:16484195	IMP		P	Antirepressor ArmZ	armZ|PA5471	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HT99
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HTI4	gbdR	involved_in	GO:0010518	PMID:19103776	IMP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTI4
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HTI4	gbdR	involved_in	GO:0010922	PMID:19103776	IMP		P	HTH-type transcriptional regulator GbdR	gbdR|PA5380	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTI4
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HTL4	oxyR	involved_in	GO:1901671	PMID:19926657	IMP		P	HTH lysR-type domain-containing protein	oxyR|PA5344	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HTL4
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HWG8	PA4218	involved_in	GO:0033252	PMID:21192796	IDA		P	Probable transporter	PA4218	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HWG8
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HWX1	nrdR	involved_in	GO:0051354	PMID:25909779	IMP		P	Transcriptional repressor NrdR	nrdR|PA4057	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HWX1
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HXS0	nalC	involved_in	GO:0032410	PMID:15387820	IMP		P	HTH tetR-type domain-containing protein	nalC|PA3721	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HXS0
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HXS2	armR	involved_in	GO:0032411	PMID:15387820	IMP		P	Antirepressor for MexR, ArmR	armR|PA3719	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HXS2
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9HY46	nalD	involved_in	GO:0032410	PMID:17028276	IMP		P	HTH tetR-type domain-containing protein	nalD|PA3574	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9HY46
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I1W5	ku	involved_in	GO:0051351	PMID:20018881	IDA		P	Non-homologous end joining protein Ku	ku|PA2150	protein	taxon:208964	20140203	UniProt		UniProtKB:Q9I1W5
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I2Y2	thrH	involved_in	GO:0016311	PMID:14699121	IDA		P	Phosphoserine phosphatase ThrH	thrH|PA1757	protein	taxon:208964	20140404	UniProt		UniProtKB:Q9I2Y2
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I3S2	gbuR	involved_in	GO:0051345	PMID:12029055	IMP		P	HTH lysR-type domain-containing protein	gbuR|PA1422	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I3S2
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I4X0	mvfR	involved_in	GO:0051349	PMID:14739337	IMP		P	Multiple virulence factor regulator MvfR	mvfR|PA1003	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I4X0
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I5D1	ampDh3	involved_in	GO:0033252	PMID:23510438	IDA		P	N-acetylmuramoyl-L-alanine amidase	ampDh3|PA0807	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I5D1
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I6J7	aguR	involved_in	GO:0051346	PMID:11673419	IMP		P	HTH tetR-type domain-containing protein	aguR|PA0294	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6J7
`
* WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- `UniProtKB	Q9I6K1	gpuR	involved_in	GO:0051345	PMID:16339950	IDA		P	HTH lysR-type domain-containing protein	gpuR|PA0289	protein	taxon:208964	20190311	PseudoCAP		UniProtKB:Q9I6K1
`
### other

* total: 0