GORULE violations assigned by Alzheimers_University_of_Toronto

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1351646 Abca7 involved_in GO:0018149 PMID:12917409 IDA P ATP-binding cassette sub-family A member 7 protein taxon:10090 20140409 Alzheimers_University_of_Toronto `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8IZY2 ABCA7 involved_in GO:0018149 GO_REF:0000024 ISS UniProtKB:Q91V24 P Phospholipid-transporting ATPase ABCA7 ABCA7 protein taxon:9606 20140515 Alzheimers_University_of_Toronto UniProtKB:Q8IZY2 `

gorule-0000027

Each identifier in GAF is valid

• total: 13

messages

• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 enables GO:0048156 PMID:23399914 IPI UniProtKB:P10637 F Myc box-dependent-interacting protein 1 protein taxon:10090 20140313 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0043065 GO_REF:0000024 ISS UniProtKB:O00499 P Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0045664 GO_REF:0000024 ISS UniProtKB:O00499 P Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0048711 GO_REF:0000024 ISS UniProtKB:O00499 P Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0060988 GO_REF:0000024 ISS UniProtKB:O00499 P Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0005874 GO_REF:0000024 ISS UniProtKB:P30622 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030018 GO_REF:0000024 ISS UniProtKB:O08839 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030315 GO_REF:0000024 ISS UniProtKB:O08839 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030424 GO_REF:0000024 ISS UniProtKB:O00499 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0031674 GO_REF:0000024 ISS UniProtKB:O08839 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0033268 GO_REF:0000024 ISS UniProtKB:O08839 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0043194 GO_REF:0000024 ISS UniProtKB:O08839 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `
• WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 part_of GO:0060987 GO_REF:0000024 ISS UniProtKB:O00499 C Myc box-dependent-interacting protein 1 protein taxon:10090 20140515 Alzheimers_University_of_Toronto `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:104908 Ptk2b is_active_in GO:0017146 GO_REF:0000024 ISS UniProtKB:P70600 C Protein-tyrosine kinase 2-beta protein taxon:10090 20240117 Alzheimers_University_of_Toronto `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q14289 PTK2B is_active_in GO:0017146 GO_REF:0000024 ISS UniProtKB:P70600 C Protein-tyrosine kinase 2-beta PTK2B|FAK2|PYK2|RAFTK protein taxon:9606 20240117 Alzheimers_University_of_Toronto UniProtKB:Q14289 `