Table of contents

Report

Group: paint - Dataset: paint_pombase

SUMMARY

This report generated on 2024-07-20

Header From Original Association File

!gaf-version: 2.2
!Created on Tue Apr 9 08:34:36 2024.
!generated-by: PANTHER
!date-generated: 2024-04-09
!PANTHER version: v.17.0.
!GO version: 2024-01-17.

Contents

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000022

Check for, and filter, annotations made to retracted publications

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Obsolete GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

Messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000055

References should have only one ID per ID space

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000061

Allowed gene product to term relations (gp2term)

Messages

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

other

Predictions

GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity AnnotationPropagation P GO:0051500 D-tyrosyl-tRNA(Tyr) deacylase activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0015746 citrate transport AnnotationPropagation P GO:0071913 citrate secondary active transmembrane transporter activity IBA
GO:0035674 tricarboxylic acid transmembrane transport AnnotationPropagation P GO:0071913 citrate secondary active transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042800 histone H3K4 methyltransferase activity IBA
GO:1901679 nucleotide transmembrane transport AnnotationPropagation P GO:0005347 ATP transmembrane transporter activity IBA
GO:0015867 ATP transport AnnotationPropagation P GO:0005347 ATP transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008649 rRNA methyltransferase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin adaptor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034553 mitochondrial respiratory chain complex II assembly IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix IBA
GO:0009107 lipoate biosynthetic process AnnotationPropagation P GO:0016992 lipoate synthase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070899 mitochondrial tRNA wobble uridine modification IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004791 thioredoxin-disulfide reductase (NADPH) activity IBA
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003873 6-phosphofructo-2-kinase activity IBA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0008331 high voltage-gated calcium channel activity IBA
GO:0051168 nuclear export AnnotationPropagation P GO:0005049 nuclear export signal receptor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004017 adenylate kinase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008821 crossover junction DNA endonuclease activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0001676 long-chain fatty acid metabolic process AnnotationPropagation P GO:0004467 long-chain fatty acid-CoA ligase activity IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0071934 thiamine transmembrane transport AnnotationPropagation P GO:0015234 thiamine transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0005227 calcium-activated cation channel activity IBA
GO:0033214 siderophore-dependent iron import into cell AnnotationPropagation P GO:0015343 siderophore-iron transmembrane transporter activity IBA
GO:0044718 siderophore transmembrane transport AnnotationPropagation P GO:0015343 siderophore-iron transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:1902476 chloride transmembrane transport AnnotationPropagation P GO:0005254 chloride channel activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004335 galactokinase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0140053 mitochondrial gene expression IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0035269 protein O-linked mannosylation AnnotationPropagation P GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
GO:1903790 guanine nucleotide transmembrane transport AnnotationPropagation P GO:0001409 guanine nucleotide transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015179 L-amino acid transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0098734 macromolecule depalmitoylation AnnotationPropagation P GO:0008474 palmitoyl-(protein) hydrolase activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045040 protein insertion into mitochondrial outer membrane IBA
GO:0072334 UDP-galactose transmembrane transport AnnotationPropagation P GO:0005459 UDP-galactose transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0035269 protein O-linked mannosylation AnnotationPropagation P GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071028 nuclear mRNA surveillance IBA
GO:0005773 vacuole AnnotationPropagation C GO:0006624 vacuolar protein processing IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0035312 5'-3' DNA exonuclease activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0046975 histone H3K36 methyltransferase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:1903710 spermine transmembrane transport AnnotationPropagation P GO:0000297 spermine transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0007007 inner mitochondrial membrane organization IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034982 mitochondrial protein processing IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0099116 tRNA 5'-end processing AnnotationPropagation P GO:0008193 tRNA guanylyltransferase activity IBA
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006390 mitochondrial transcription AnnotationPropagation P GO:0034246 mitochondrial transcription factor activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0034499 late endosome to Golgi transport IBA
GO:0005829 cytosol AnnotationPropagation C GO:0034499 late endosome to Golgi transport IBA
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0006627 protein processing involved in protein targeting to mitochondrion IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004708 MAP kinase kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:1903352 L-ornithine transmembrane transport AnnotationPropagation P GO:0000064 L-ornithine transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0007186 G protein-coupled receptor signaling pathway AnnotationPropagation P GO:0004930 G protein-coupled receptor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004708 MAP kinase kinase activity IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015790 UDP-xylose transmembrane transport AnnotationPropagation P GO:0005464 UDP-xylose transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070125 mitochondrial translational elongation IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0015093 ferrous iron transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0006627 protein processing involved in protein targeting to mitochondrion IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0035433 acetate transmembrane transport AnnotationPropagation P GO:0015123 acetate transmembrane transporter activity IBA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine phosphate oxidase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0015093 ferrous iron transmembrane transporter activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:1902476 chloride transmembrane transport AnnotationPropagation P GO:0005247 voltage-gated chloride channel activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034553 mitochondrial respiratory chain complex II assembly IBA
GO:0006750 glutathione biosynthetic process AnnotationPropagation P GO:0004363 glutathione synthase activity IBA
GO:0015813 L-glutamate transmembrane transport AnnotationPropagation P GO:0005313 L-glutamate transmembrane transporter activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006383 transcription by RNA polymerase III AnnotationPropagation P GO:0000995 RNA polymerase III general transcription initiation factor activity IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin adaptor activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010485 histone H4 acetyltransferase activity IBA
GO:0097359 UDP-glucosylation AnnotationPropagation P GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004520 DNA endonuclease activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0035445 borate transmembrane transport AnnotationPropagation P GO:0080139 borate efflux transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0043504 mitochondrial DNA repair IBA
GO:0007186 G protein-coupled receptor signaling pathway AnnotationPropagation P GO:0004932 mating-type factor pheromone receptor activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0016149 translation release factor activity, codon specific IBA
GO:0006415 translational termination AnnotationPropagation P GO:0016149 translation release factor activity, codon specific IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0016149 translation release factor activity, codon specific IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0098656 monoatomic anion transmembrane transport AnnotationPropagation P GO:0008308 voltage-gated monoatomic anion channel activity IBA
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process AnnotationPropagation P GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008296 3'-5'-DNA exonuclease activity IBA
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0006657 CDP-choline pathway AnnotationPropagation P GO:0004103 choline kinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010485 histone H4 acetyltransferase activity IBA
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process AnnotationPropagation P GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:1901800 positive regulation of proteasomal protein catabolic process AnnotationPropagation P GO:0036402 proteasome-activating activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0017108 5'-flap endonuclease activity IBA
GO:0005773 vacuole AnnotationPropagation C GO:0007039 protein catabolic process in the vacuole IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0034204 lipid translocation AnnotationPropagation P GO:0140326 ATPase-coupled intramembrane lipid transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0032452 histone demethylase activity IBA
GO:0006366 transcription by RNA polymerase II AnnotationPropagation P GO:0016251 RNA polymerase II general transcription initiation factor activity IBA
GO:1901800 positive regulation of proteasomal protein catabolic process AnnotationPropagation P GO:0036402 proteasome-activating activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IBA
GO:0035352 NAD transmembrane transport AnnotationPropagation P GO:0051724 NAD transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015174 basic amino acid transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly IBA
GO:0070778 L-aspartate transmembrane transport AnnotationPropagation P GO:0015183 L-aspartate transmembrane transporter activity IBA
GO:0015800 acidic amino acid transport AnnotationPropagation P GO:0015183 L-aspartate transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0090150 establishment of protein localization to membrane AnnotationPropagation P GO:0032977 membrane insertase activity IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic process IBA
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0000316 sulfite transport AnnotationPropagation P GO:0000319 sulfite transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0000319 sulfite transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0015914 phospholipid transport AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0140053 mitochondrial gene expression IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IBA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043138 3'-5' DNA helicase activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015295 solute:proton symporter activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity AnnotationPropagation P GO:0002161 aminoacyl-tRNA editing activity IBA
GO:0005773 vacuole AnnotationPropagation C GO:0006624 vacuolar protein processing IBA
GO:0006353 DNA-templated transcription termination AnnotationPropagation P GO:0001147 transcription termination site sequence-specific DNA binding IBA
GO:0071266 'de novo' L-methionine biosynthetic process AnnotationPropagation P GO:0003961 O-acetylhomoserine aminocarboxypropyltransferase activity IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0006360 transcription by RNA polymerase I AnnotationPropagation P GO:0001181 RNA polymerase I general transcription initiation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0005227 calcium-activated cation channel activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070124 mitochondrial translational initiation IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0000014 single-stranded DNA endodeoxyribonuclease activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042054 histone methyltransferase activity IBA
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0006895 Golgi to endosome transport IBA
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0005388 P-type calcium transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0015847 putrescine transport AnnotationPropagation P GO:0015489 putrescine transmembrane transporter activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015489 putrescine transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006353 DNA-templated transcription termination AnnotationPropagation P GO:0001147 transcription termination site sequence-specific DNA binding IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0022904 respiratory electron transport chain AnnotationPropagation P GO:0004174 electron-transferring-flavoprotein dehydrogenase activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:0015878 biotin transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:0035461 vitamin transmembrane transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0000226 microtubule cytoskeleton organization AnnotationPropagation P GO:0061863 microtubule plus end polymerase IBA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0005783 endoplasmic reticulum AnnotationPropagation C GO:0006621 protein retention in ER lumen IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006222 UMP biosynthetic process AnnotationPropagation P GO:0004849 uridine kinase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042776 proton motive force-driven mitochondrial ATP synthesis IBA

Predictions (experimental)