GORULE violations assigned by BHF-UCL


Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000015 Dual species taxon check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000065 Annotations to term that are candidates for obsoletion should be removed



MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

messages

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

messages

gorule-0000008

No annotations should be made to uninformative high level terms

messages

gorule-0000013

Taxon-appropriate annotation check

messages

gorule-0000015

Dual species taxon check

messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

messages

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

messages

gorule-0000061

Allowed gene product to term relations (gp2term)

messages

gorule-0000065

Annotations to term that are candidates for obsoletion should be removed

messages