GO Rule Violations by Group Dataset

Generated on 2024-12-15
Rule ecocyc goa_chicken goa_cow goa_dog goa_human goa_pig mgi paint_cgd paint_dictybase paint_ecocyc paint_fb paint_goa_chicken paint_goa_human paint_mgi paint_other paint_pombase paint_rgd paint_sgd paint_tair paint_wb paint_xenbase paint_zfin pseudocap wb

GAF lines are parsed according to GAF 2.2 specifications:
gorule-0000001

0 5 41 7 1207 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1739 0

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515':
gorule-0000002

0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding'':
gorule-0000005

0 2 22 1 14 2 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC:
gorule-0000006

23 0 2 0 26 0 448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI should not be used with GO:0003824 catalytic activity or descendents:
gorule-0000007

0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

No annotations should be made to uninformative high level terms:
gorule-0000008

0 39 42 5 392 10 420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 320

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND:
gorule-0000011

0 0 3 3 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Dual species taxon check:
gorule-0000015

0 0 1 0 38 1 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

With/From: IC annotations require a With/From GO ID:
gorule-0000016

38 0 0 0 197 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IDA annotations must not have a With/From entry:
gorule-0000017

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI annotations require a With/From entry:
gorule-0000018

449 1 12 0 1719 2 130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Automatic repair of annotations to merged or obsoleted terms:
gorule-0000020

135 257 315 206 1325 260 1512 18 31 9 24 47 66 53 4951 23 54 19 55 28 39 56 271 292

Check for, and filter, annotations made to retracted publications:
gorule-0000022

0 2 0 0 27 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Each identifier in GAF is valid:
gorule-0000027

160 10000 10000 10000 10000 10000 10000 0 0 0 5 5 8 6 142 0 4193 0 0 3 6 6 75 10000

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect:
gorule-0000028

0 0 1 0 3 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEAs should be less than one year old.:
gorule-0000029

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0

Obsolete GO_REFs are not allowed:
gorule-0000030

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference:
gorule-0000037

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants:
gorule-0000039

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Qualifier: IKR evidence code requires a NOT qualifier:
gorule-0000042

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.:
gorule-0000046

404 691 720 584 875 679 1728 1 1 0 2 9 5 16 356 1 15 1 1 4 16 13 0 69

Annotations to ISS, ISA and ISO should not be self-referential:
gorule-0000050

0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

References should have only one ID per ID space:
gorule-0000055

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Object extensions should conform to the extensions-patterns.yaml file in metadata:
gorule-0000058

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2:
gorule-0000059

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3726 0

Allowed gene product to term relations (gp2term):
gorule-0000061

607 30 98 7 3942 19 4878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 253

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column):
gorule-0000063

26 1 0 0 12 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 971 192

TreeGrafter IEAs should be filtered for GO reference species:
gorule-0000064

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Annotations to term that are candidates for obsoletion should be removed:
gorule-0000065

20 279 594 171 4281 243 4705 5 0 0 0 3 5 4 101 6 4 9 0 0 2 2 42 715