GO Rule Violations by Group Dataset

Generated on 2022-06-11
Rule goa_chicken goa_chicken_complex goa_human_isoform goa_pig goa_pig_complex goa_pig_isoform goa_pig_rna mgi paint_mgi paint_pombase paint_wb pseudocap wb

GAF lines are parsed according to GAF 2.2 specifications:
gorule-0000001

0 0 0 0 0 0 0 69 0 0 0 1739 1

No 'NOT' annotations to 'protein binding ; GO:0005515':
gorule-0000002

0 0 0 0 0 0 0 0 0 0 0 0 0

IEP and HEP usage is restricted to terms from the Biological Process ontology:
gorule-0000006

0 0 0 0 0 0 0 0 0 0 0 0 1

IPI should not be used with GO:0003824 catalytic activity or descendents:
gorule-0000007

0 0 0 0 0 0 0 0 0 0 0 0 0

No annotations should be made to uninformative high level terms:
gorule-0000008

26 0 0 6 0 2 0 1120 520 39 221 23 79

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND:
gorule-0000011

0 0 0 0 0 0 2 0 0 0 0 0 0

Taxon-appropriate annotation check:
gorule-0000013

95 0 0 10 0 2 0 17 22 45 66 2 69

Dual species taxon check:
gorule-0000015

1 0 3 3 0 1 0 0 0 0 0 0 0

With/From: IC annotations require a With/From GO ID:
gorule-0000016

8 18 437 4 4 0 0 3652 0 0 0 0 0

IDA annotations must not have a With/From entry:
gorule-0000017

0 0 0 0 0 0 0 0 0 0 0 0 0

IPI annotations require a With/From entry:
gorule-0000018

1 0 120 2 3 0 0 123 0 0 0 0 0

Automatic repair of annotations to merged or obsoleted terms:
gorule-0000020

48 0 93 78 0 48 0 308 67 19 30 212 450

IBA annotations must have been sourced from the PAINT inference pipeline:
gorule-0000026

10000 0 726 10000 0 10000 0 1723 0 0 0 0 10000

Each identifier in GAF is valid:
gorule-0000027

0 0 5 0 0 0 0 6 0 0 0 0 0

Aspect can only be one of C, P, F and should be repaired using the GO term:
gorule-0000028

0 0 0 0 0 0 0 0 0 0 0 0 0

IEAs should be less than one year old.:
gorule-0000029

0 0 0 0 0 0 0 0 0 0 0 14 5

Deprecated GO_REFs are not allowed:
gorule-0000030

0 0 0 0 0 0 0 0 0 0 0 0 0

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference:
gorule-0000037

0 0 0 0 0 0 0 0 0 0 0 0 0

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants:
gorule-0000039

0 0 0 0 0 0 0 0 0 0 0 0 0

Qualifier: IKR evidence code requires a NOT qualifier:
gorule-0000042

0 0 0 0 0 0 0 0 0 0 0 0 0

Check for valid combination of evidence code and GO_REF:
gorule-0000043

0 0 0 0 0 0 0 0 0 0 0 0 0

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.:
gorule-0000046

279 0 161 617 0 222 0 1138 48 1 7 0 69

Annotations to ISS, ISA and ISO should not be self-referential:
gorule-0000050

0 0 0 0 0 0 0 0 0 0 0 0 0

References should have only one ID per ID space:
gorule-0000055

0 0 0 0 0 0 0 0 0 0 0 0 0

Group specific filter rules should be applied to annotations:
gorule-0000057

0 0 0 0 0 0 0 0 0 0 0 0 0

Object extensions should conform to the extensions-patterns.yaml file in metadata:
gorule-0000058

0 0 0 0 0 0 0 0 0 0 0 0 0

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2:
gorule-0000059

0 0 0 0 0 0 0 0 0 0 0 3726 0

Allowed gene product to term relations (gp2term):
gorule-0000061

37 1 199 33 0 9 0 6616 0 0 0 0 160

Other

0 0 0 0 0 0 0 0 0 0 0 0 0