GORULE violations assigned by CAFA

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 10

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88256 Camk2a involved_in GO:0018105 MGI:MGI:5882895|PMID:15994560 IDA P calcium/calmodulin-dependent protein kinase II alpha alpha-CaMKII protein_coding_gene taxon:10090 20160919 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882918|PMID:9688563 IMP P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160915 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882920|PMID:9413984 IDA P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160921 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97595 Prkca involved_in GO:0010360 MGI:MGI:5882922|PMID:7828597 IMP P protein kinase C, alpha Pkca protein_coding_gene taxon:10090 20170123 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97798 Ptgs2 involved_in GO:0043154 MGI:MGI:5474549|PMID:21716255 IMP P prostaglandin-endoperoxide synthase 2 Cox-2|COX2|cyclooxygenase 2|cyclooxygenase-2|Pghs2|PGHS-2|PHS-2|prostaglandin G/H synthase|Tis10 protein_coding_gene taxon:10090 20161108 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1350917 Rps3 involved_in GO:0051092 MGI:MGI:5882887|PMID:18045535 IMP P ribosomal protein S3 D7Ertd795e protein_coding_gene taxon:10090 20160512 CAFA has_input(GO:0035525) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1913771 Rwdd1 involved_in GO:2000825 MGI:MGI:5882884|PMID:18761815 IMP P RWD domain containing 1 2610002D06Rik|2700069A07Rik protein_coding_gene taxon:10090 20161115 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`WB WBGene00002191 kin-3 involved_in GO:0018105 WB_REF:WBPaper00051123|PMID:1304892 IDA P B0205.7|casein kinase II|CKIIalpha gene taxon:6239 20160919 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8N726 CDKN2A involved_in GO:1904667 PMID:18560357 IDA P Tumor suppressor ARF CDKN2A|CDKN2|MLM protein taxon:9606 20170124 CAFA UniProtKB:Q8N726 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5ZLC9 GOLGA7 involved_in GO:0018230 GO_REF:0000024 ISS UniProtKB:Q7Z5G4 P Golgin subfamily A member 7 GOLGA7|RCJMB04_6k22 protein taxon:9031 20131211 CAFA `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 3

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:88005 Amelx enables GO:0042803 MGI:MGI:5882882|PMID:19086270 IDA F amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein_coding_gene taxon:10090 20161125 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:98181 Rrm2 enables GO:0042803 MGI:MGI:5882921|PMID:8876648 IDA F ribonucleotide reductase M2 R2 protein_coding_gene taxon:10090 20161103 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1915928 Smtnl1 enables GO:0043621 MGI:MGI:5882874|PMID:22424482 IDA F smoothelin-like 1 1110030K22Rik|Chasm protein_coding_gene taxon:10090 20161014 CAFA `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:1197015 Daxx colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C Fas death domain-associated protein protein_coding_gene taxon:10090 20161116 CAFA `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:104662 Pml colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C promyelocytic leukemia 1200009E24Rik|Trim19 protein_coding_gene taxon:10090 20161116 CAFA `