GO Rule Violations by Group Dataset

Generated on 2024-01-26
Rule goa_chicken goa_chicken_complex goa_human_isoform goa_pig goa_pig_complex goa_pig_isoform goa_pig_rna mgi paint_mgi paint_pombase paint_sgd paint_wb paint_xenbase pseudocap sgd wb

GAF lines are parsed according to GAF 2.2 specifications:
gorule-0000001

0 0 0 0 0 0 0 0 0 0 0 0 0 1739 0 0

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515':
gorule-0000002

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC:
gorule-0000006

0 0 5 0 0 0 0 1 0 0 0 0 0 0 0 0

IPI should not be used with GO:0003824 catalytic activity or descendents:
gorule-0000007

0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

No annotations should be made to uninformative high level terms:
gorule-0000008

337 0 317 190 0 137 0 5723 1937 298 325 988 1609 70 0 1749

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND:
gorule-0000011

0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0

Taxon-appropriate annotation check:
gorule-0000013

107 0 0 13 0 1 0 6 21 41 21 35 33 2 1 83

Dual species taxon check:
gorule-0000015

0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0

With/From: IC annotations require a With/From GO ID:
gorule-0000016

0 0 4 0 0 0 0 2 0 0 0 0 0 0 0 0

IDA annotations must not have a With/From entry:
gorule-0000017

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI annotations require a With/From entry:
gorule-0000018

1 0 16 2 0 0 0 123 0 0 0 0 0 0 93 0

Automatic repair of annotations to merged or obsoleted terms:
gorule-0000020

84 0 86 201 0 73 0 52 139 42 48 95 118 230 9 461

IBA annotations must have been sourced from the PAINT inference pipeline:
gorule-0000026

10000 0 41 10000 0 7967 0 0 0 0 0 0 0 0 48 10000

Each identifier in GAF is valid:
gorule-0000027

0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect:
gorule-0000028

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEAs should be less than one year old.:
gorule-0000029

0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0

Obsolete GO_REFs are not allowed:
gorule-0000030

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference:
gorule-0000037

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants:
gorule-0000039

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Qualifier: IKR evidence code requires a NOT qualifier:
gorule-0000042

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Check for valid combination of evidence code and GO_REF:
gorule-0000043

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.:
gorule-0000046

314 0 161 735 0 137 0 1222 36 1 2 5 22 0 0 69

Annotations to ISS, ISA and ISO should not be self-referential:
gorule-0000050

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

References should have only one ID per ID space:
gorule-0000055

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Group specific filter rules should be applied to annotations:
gorule-0000057

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Object extensions should conform to the extensions-patterns.yaml file in metadata:
gorule-0000058

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2:
gorule-0000059

0 0 0 0 0 0 0 0 0 0 0 0 0 3726 0 0

Allowed gene product to term relations (gp2term):
gorule-0000061

28 3 41 20 0 0 0 7453 0 0 0 0 0 6 336 167

Other

 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0