Table of contents

Summary

GAF summary

Found 34924 annotations in 34943 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000005 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000005) No ISS or ISS-related annotations to 'protein binding ; GO:0005515', there is one violation with type Error.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 12 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there is one violation with type Warning.

GAF Prediction Summary

Found 6 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-05-30/extensions/go-gaf.owl

Report

Group: goa - Dataset: goa_cow_isoform

SUMMARY

This report generated on 2019-05-30

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-05-07 11:16
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-05-04/extensions/go-plus.owl
!

Contents

gorule-0000020

other

MESSAGES

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #34924 annotations in 34943 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000005 No ISS or ISS-related annotations to 'protein binding ; GO:0005515' Error count: 1
12598 GO_AR:0000005 Error No ISS or ISS-related annotations to 'protein binding ; GO:0005515' UniProtKB A0A3Q1N449 TGFB1 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta TGFB1 protein taxon:9913 20141202 AgBase UniProtKB:E1BNK3
#------------
# GO_AR:0000014 Valid GO term ID Error count: 12
4233 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0010867 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4233 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0010867 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4240 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045542 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4240 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045542 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4242 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045723 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001911),has_agent(UBERON:0002107),occurs_in(UBERON:0001013) UniProtKB:B0FPG4
4242 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045723 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001911),has_agent(UBERON:0002107),occurs_in(UBERON:0001013) UniProtKB:B0FPG4
4243 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045723 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4243 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0045723 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4247 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0071073 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001911),has_agent(UBERON:0002107),occurs_in(UBERON:0001013) UniProtKB:B0FPG4
4247 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:0071073 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001911),has_agent(UBERON:0002107),occurs_in(UBERON:0001013) UniProtKB:B0FPG4
4248 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:1900482 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
4248 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q1LZG1 GH1 GO:1900482 PMID:2731415 IDA P Growth hormone GH1 protein taxon:9913 20150522 AgBase happens_during(GO:0007595),has_agent(UBERON:0001013),has_agent(UBERON:0002107),occurs_in(UBERON:0001911) UniProtKB:B0FPG4
#------------
# GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 1
12598 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field UniProtKB A0A3Q1N449 TGFB1 GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta TGFB1 protein taxon:9913 20141202 AgBase UniProtKB:E1BNK3
#------------

Predictions

GO:0009967 positive regulation of signal transduction AnnotationPropagation P GO:0030160 GKAP/Homer scaffold activity ISS
GO:0005623 cell AnnotationPropagation C GO:0032596 protein transport into membrane raft IMP
GO:0016020 membrane AnnotationPropagation C GO:0032596 protein transport into membrane raft IMP
GO:0005623 cell AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol ISS
GO:0005737 cytoplasm AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol ISS
GO:0005623 cell AnnotationPropagation C GO:0097277 cellular urea homeostasis ISS

Predictions (experimental)