The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.
These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.
| Species/Database | Entity type | Annotations | File |
|---|---|---|---|
| Species/Database | Entity type | Annotations | File |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
isoform | 75474 | goa_pig_isoform.gaf (gzip) |
|
Mus musculus
Mouse Genome Informatics (mgi) |
n/a | 348894 | mgi.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
protein | 134802 | goa_pig.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
complex | 103 | goa_chicken_complex.gaf (gzip) |
|
Escherichia coli
Encyclopedia of E. coli metabolism (ecocyc) |
n/a | 63080 | ecocyc.gaf (gzip) |
|
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap) |
n/a | 3625 | pseudocap.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
complex | 23 | goa_pig_complex.gaf (gzip) |
|
Caenorhabditis elegans
WormBase database of nematode biology (wb) |
n/a | 127545 | wb.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
rna | 22408 | goa_pig_rna.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
isoform | 172695 | goa_human_isoform.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
protein | 73021 | goa_chicken.gaf (gzip) |
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