GORULE violations assigned by CAFA

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 36

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88256 Camk2a involved_in GO:0018105 MGI:MGI:5882895|PMID:15994560 IDA P calcium/calmodulin-dependent protein kinase II alpha alpha-CaMKII protein_coding_gene taxon:10090 20160919 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882920|PMID:9413984 IDA P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160921 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97592 Prkaca involved_in GO:0018105 MGI:MGI:5882918|PMID:9688563 IMP P protein kinase, cAMP dependent, catalytic, alpha C alpha|Cs|PKA|Pkaca protein_coding_gene taxon:10090 20160915 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97595 Prkca involved_in GO:0010360 MGI:MGI:5882922|PMID:7828597 IMP P protein kinase C, alpha Pkca protein_coding_gene taxon:10090 20170123 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97798 Ptgs2 involved_in GO:0043154 MGI:MGI:5474549|PMID:21716255 IMP P prostaglandin-endoperoxide synthase 2 Cox-2|COX2|cyclooxygenase 2|cyclooxygenase-2|Pghs2|PGHS-2|PHS-2|prostaglandin G/H synthase|Tis10 protein_coding_gene taxon:10090 20161108 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1350917 Rps3 involved_in GO:0051092 MGI:MGI:5882887|PMID:18045535 IMP P ribosomal protein S3 D7Ertd795e protein_coding_gene taxon:10090 20160512 CAFA has_input(GO:0035525) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1913771 Rwdd1 involved_in GO:2000825 MGI:MGI:5882884|PMID:18761815 IMP P RWD domain containing 1 2610002D06Rik|2700069A07Rik protein_coding_gene taxon:10090 20161115 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P00634 phoA involved_in GO:0006470 PMID:8634266 IDA P Alkaline phosphatase phoA|JW0374|b0383 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P02942 tsr involved_in GO:0032110 PMID:18931127 IMP P Methyl-accepting chemotaxis protein I tsr|cheD|JW4318|b4355 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P07330 cheB involved_in GO:0006482 PMID:15916610 IDA P Protein-glutamate methylesterase/protein-glutamine glutaminase cheB|JW1872|b1883 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P07330 cheB involved_in GO:0018277 PMID:15916610 IDA P Protein-glutamate methylesterase/protein-glutamine glutaminase cheB|JW1872|b1883 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P07364 cheR involved_in GO:0006479 PMID:15916610 IDA P Chemotaxis protein methyltransferase cheR|cheX|JW1873|b1884 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7J7 rplK involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL11 rplK|relC|JW3946|b3983 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7K6 rplS involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL19 rplS|JW2587|b2606 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7L0 rplA involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL1 rplA|JW3947|b3984 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7L8 rpmA involved_in GO:0000027 PMID:11673426 IGI UniProtKB:O67650 P Large ribosomal subunit protein bL27 rpmA|JW3152|b3185 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7L8 rpmA involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL27 rpmA|JW3152|b3185 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7M2 rpmB involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL28 rpmB|JW3612|b3637 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7M6 rpmC involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL29 rpmC|JW3274|b3312 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7N4 rpmF involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL32 rpmF|JW1075|b1089 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0A7N9 rpmG involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL33 rpmG|JW3611|b3636 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0ADY7 rplP involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL16 rplP|JW3275|b3313 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0ADZ0 rplW involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL23 rplW|JW3280|b3318 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0AFZ3 sspB involved_in GO:0032781 PMID:14536075 IMP P Stringent starvation protein B sspB|JW3197|b3228 protein taxon:83333 20160930 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0AG44 rplQ involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL17 rplQ|JW3256|b3294 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0AG51 rpmD involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL30 rpmD|JW3264|b3302 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P0AG55 rplF involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL6 rplF|JW3267|b3305 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P21513 rne involved_in GO:1902280 PMID:15236960 IMP P Ribonuclease E rne|ams|hmp1|JW1071|b1084 protein taxon:83333 20161004 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P32099 lplA involved_in GO:0009249 PMID:16384580 IDA P Lipoate-protein ligase A lplA|yjjF|JW4349|b4386 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60422 rplB involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL2 rplB|JW3279|b3317 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60438 rplC involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL3 rplC|JW3282|b3320 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60624 rplX involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein uL24 rplX|JW3271|b3309 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P68919 rplY involved_in GO:0000027 PMID:3297162 IDA P Large ribosomal subunit protein bL25 rplY|JW2173|b2185 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`WB WBGene00002191 kin-3 involved_in GO:0018105 WB_REF:WBPaper00051123|PMID:1304892 IDA P B0205.7|casein kinase II|CKIIalpha gene taxon:6239 20160919 CAFA `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8N726 CDKN2A involved_in GO:1904667 PMID:18560357 IDA P Tumor suppressor ARF CDKN2A|CDKN2|MLM protein taxon:9606 20170124 CAFA UniProtKB:Q8N726 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5ZLC9 GOLGA7 involved_in GO:0018230 GO_REF:0000024 ISS UniProtKB:Q7Z5G4 P Golgin subfamily A member 7 GOLGA7|RCJMB04_6k22 protein taxon:9031 20131211 CAFA `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 19

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:88005 Amelx enables GO:0042803 MGI:MGI:5882882|PMID:19086270 IDA F amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein_coding_gene taxon:10090 20161125 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:98181 Rrm2 enables GO:0042803 MGI:MGI:5882921|PMID:8876648 IDA F ribonucleotide reductase M2 R2 protein_coding_gene taxon:10090 20161103 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1915928 Smtnl1 enables GO:0043621 MGI:MGI:5882874|PMID:22424482 IDA F smoothelin-like 1 1110030K22Rik|Chasm protein_coding_gene taxon:10090 20161014 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05704 trg enables GO:0042803 PMID:15916610 IMP F Methyl-accepting chemotaxis protein III trg|JW1417|b1421 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P06709 birA enables GO:0042803 PMID:11124029 IMP F Bifunctional ligase/repressor BirA birA|bioR|dhbB|JW3941|b3973 protein taxon:83333 20161020 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P07017 tar enables GO:0042803 PMID:15916610 IMP F Methyl-accepting chemotaxis protein II tar|cheM|JW1875|b1886 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P09372 grpE enables GO:0042803 PMID:9103205 IDA F Protein GrpE grpE|JW2594|b2614 protein taxon:83333 20160926 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0A6R3 fis enables GO:0042803 PMID:11183780 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0A6R3 fis enables GO:0042803 PMID:1619650 IDA F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0A6R3 fis enables GO:0042803 PMID:1946369 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0A6R3 fis enables GO:0042803 PMID:9362499 IMP F DNA-binding protein Fis fis|JW3229|b3261 protein taxon:83333 20161028 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0A7K2 rplL enables GO:0042803 PMID:10747797 IDA F Large ribosomal subunit protein bL12 rplL|JW3949|b3986 protein taxon:83333 20160630 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AE70 mazF enables GO:0042803 PMID:12718874 IDA F Endoribonuclease toxin MazF mazF|chpA|chpAK|JW2753|b2782 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AE72 mazE enables GO:0042803 PMID:12718874 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AE72 mazE enables GO:0042803 PMID:12743116 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AE72 mazE enables GO:0042803 PMID:15735309 IDA F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20161017 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AFG8 aceE enables GO:0042803 PMID:11955070 IDA F Pyruvate dehydrogenase E1 component aceE|JW0110|b0114 protein taxon:83333 20161031 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AFI7 pdxH enables GO:0042803 PMID:15858270 IDA F Pyridoxine/pyridoxamine 5'-phosphate oxidase pdxH|JW1630|b1638 protein taxon:83333 20160927 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P0AFZ3 sspB enables GO:0042803 PMID:14536075 IMP F Stringent starvation protein B sspB|JW3197|b3228 protein taxon:83333 20160930 CAFA `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:1197015 Daxx colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C Fas death domain-associated protein protein_coding_gene taxon:10090 20161116 CAFA `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:104662 Pml colocalizes_with GO:0000792 MGI:MGI:5882889|PMID:17081986 IDA C promyelocytic leukemia 1200009E24Rik|Trim19 protein_coding_gene taxon:10090 20161116 CAFA `