GORULE violations assigned by HGNC-UCL

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 19

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:2444891 Abra involved_in GO:0051091 MGI:MGI:3694148|PMID:11983702 IDA P actin-binding Rho activating protein C130068O12Rik|STARS protein_coding_gene taxon:10090 20061120 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1351330 Cartpt acts_upstream_of GO:0045860 MGI:MGI:3696614|PMID:15908120 IDA P CART prepropeptide Cart protein_coding_gene taxon:10090 20210421 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88537 Csk involved_in GO:0006468 MGI:MGI:3687921|PMID:12612075 TAS P c-src tyrosine kinase protein_coding_gene taxon:10090 20050412 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1919170 Epgn acts_upstream_of GO:0043406 MGI:MGI:1934957|PMID:11278323 IDA P epithelial mitogen 2310069M11Rik|epigen protein_coding_gene taxon:10090 20210421 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1919170 Epgn involved_in GO:0045741 MGI:MGI:1934957|PMID:11278323 IDA P epithelial mitogen 2310069M11Rik|epigen protein_coding_gene taxon:10090 20070521 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1919367 Naa50 involved_in GO:0006474 MGI:MGI:3715072|PMID:16507339 TAS P N(alpha)-acetyltransferase 50, NatE catalytic subunit 2600005K24Rik|2810441M03Rik|Mak3p|Nat13|Nat5|San protein_coding_gene taxon:10090 20060518 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1921289 Nfam1 involved_in GO:0051091 MGI:MGI:3703425|PMID:12615919 ISS UniProtKB:Q8NET5 P Nfat activating molecule with ITAM motif 1 4921501M20Rik|Nfam1 protein_coding_gene taxon:10090 20050127 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1316706 Nfs1 involved_in GO:0018283 MGI:MGI:3763294|PMID:16847322 IDA P nitrogen fixation gene 1 (S. cerevisiae) m-Nfs1 protein_coding_gene taxon:10090 20071022 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:99694 Rasgrf1 involved_in GO:0043547 MGI:MGI:3706230|PMID:17135267 IDA P RAS protein-specific guanine nucleotide-releasing factor 1 CDC25|CDC25Mm|Grf1|Grfbeta protein_coding_gene taxon:10090 20071023 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:99694 Rasgrf1 involved_in GO:0090630 MGI:MGI:3706230|PMID:17135267 IDA P RAS protein-specific guanine nucleotide-releasing factor 1 CDC25|CDC25Mm|Grf1|Grfbeta protein_coding_gene taxon:10090 20071023 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1277137 Stmn3 involved_in GO:0043087 MGI:MGI:3706230|PMID:17135267 IDA P stathmin-like 3 9330161A03Rik|Sclip protein_coding_gene taxon:10090 20071023 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1934835 Ube2n involved_in GO:0051092 MGI:MGI:3715077|PMID:14695475 ISS UniProtKB:P61088 P ubiquitin-conjugating enzyme E2N UBC13 protein_coding_gene taxon:10090 20070426 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q28997 ADRB2 involved_in GO:0002032 GO_REF:0000024 ISS UniProtKB:P07550 P Beta-2 adrenergic receptor ADRB2 protein taxon:9823 20060628 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q28997 ADRB2 involved_in GO:0007190 GO_REF:0000024 ISS UniProtKB:P07550 P Beta-2 adrenergic receptor ADRB2 protein taxon:9823 20060628 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9BDP9 CARTPT acts_upstream_of GO:0045860 GO_REF:0000024 ISS UniProtKB:P49192 P Cocaine- and amphetamine-regulated transcript protein CARTPT|CART protein taxon:9823 20210421 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O15304 SIVA1 involved_in GO:0032088 PMID:16491128 IDA P Apoptosis regulatory protein Siva SIVA1|SIVA protein taxon:9606 20070129 HGNC-UCL UniProtKB:O15304-1 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5EG71 EPGN involved_in GO:0043406 GO_REF:0000024 ISS UniProtKB:Q6UW88 P Epigen EPGN protein taxon:9031 20070521 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5EG71 EPGN involved_in GO:0045741 GO_REF:0000024 ISS UniProtKB:Q6UW88 P Epigen EPGN protein taxon:9031 20070521 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5ZIB9 PRMT7 involved_in GO:0018216 GO_REF:0000024 ISS UniProtKB:Q9NVM4 P Protein arginine N-methyltransferase 7 PRMT7|RCJMB04_28e13 protein taxon:9031 20060303 HGNC-UCL `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 6

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:2137858 Cadm3 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q99N28 F cell adhesion molecule 3 BIgR|Igsf4b|Necl1|Necl-1|SynCAM3|Tsll1 protein_coding_gene taxon:10090 20230221 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1926483 Nectin1 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q9JKF6 F nectin cell adhesion molecule 1 Cd111|HIgR|HveC|nectin-1|PRR|PRR1|Pvrl1 protein_coding_gene taxon:10090 20230221 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:97822 Nectin2 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:P32507 F nectin cell adhesion molecule 2 Cd112|MPH|nectin-2|Pvrl2|Pvs protein_coding_gene taxon:10090 20230221 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1930171 Nectin3 enables GO:0042803 MGI:MGI:2675176|PMID:12826663 IPI UniProtKB:Q9JLB9 F nectin cell adhesion molecule 3 2610301B19Rik|3000002N23Rik|4921513D19Rik|nectin-3|Pvrl3 protein_coding_gene taxon:10090 20230221 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1891731 Stub1 enables GO:0042803 MGI:MGI:3612351|PMID:16307917 IPI UniProtKB:Q9WUD1 F STIP1 homology and U-Box containing protein 1 0610033N24Rik|2210017D18Rik|2310040B03Rik|CHIP protein_coding_gene taxon:10090 20230221 HGNC-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q28997 ADRB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07550 F Beta-2 adrenergic receptor ADRB2 protein taxon:9823 20060628 HGNC-UCL `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P60896 SEM1 colocalizes_with GO:0032039 PMID:16239144 IDA C 26S proteasome complex subunit SEM1 SEM1|C7orf76|DSS1|SHFDG1|SHFM1 protein taxon:9606 20060726 HGNC-UCL UniProtKB:P60896 `