GORULE violations assigned by SynGO

Contents

gorule-0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000016 With/From: IC annotations require a With/From GO ID

MESSAGES

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 5

messages

• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(GO:0098978),part_of(UBERON:0000955) UniProtKB:P51790-1 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(GO:0098982),part_of(UBERON:0000955) UniProtKB:P51790-1 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0002421) UniProtKB:P51790-1 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0098978 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0000955) UniProtKB:P51790-1 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0098982 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20220928 SynGO part_of(UBERON:0000955) UniProtKB:P51790-1 `

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 3

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1316660 Cacng2 involved_in GO:2000311 MGI:MGI:5887196|PMID:15758178 IDA P calcium channel, voltage-dependent, gamma subunit 2 B230105C07Rik|B930041E13Rik|stargazin|TARP gamma 2 protein_coding_gene taxon:10090 20170324 SynGO `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1919805 Shisa9 involved_in GO:0098962 MGI:MGI:4440391|PMID:20185686 IC GO:0045211,GO:2000311 P shisa family member 9 2700045P11Rik|CKAMP44 protein_coding_gene taxon:10090 20160615 SynGO occurs_in(GO:0098794),occurs_in(GO:0060076),has_input(GO:0032281) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1919805 Shisa9 involved_in GO:2000311 MGI:MGI:4440391|PMID:20185686 IDA P shisa family member 9 2700045P11Rik|CKAMP44 protein_coding_gene taxon:10090 20160603 SynGO `

gorule-0000013

Taxon-appropriate annotation check

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 EXP C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20220928 SynGO `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 IDA C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20220928 SynGO `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`MGI MGI:95808 Gria1 located_in GO:0098839 MGI:MGI:3615715|PMID:14555717 IC GO:0098839 C glutamate receptor, ionotropic, AMPA1 (alpha 1) 2900051M01Rik|Glr1|Glr-1|GluA1|Glur1|Glur-1|GluR1|GluRA|GluR-A|HIPA1 protein_coding_gene taxon:10090 20161125 SynGO part_of(GO:0060076),part_of(CL:1001571),part_of(EMAPA:32768) `