GORULE violations assigned by RHEA

Contents

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000013

Taxon-appropriate annotation check

• total: 5

messages

• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`ZFIN ZDB-GENE-041010-220 gpd1l enables GO:0047952 ZFIN:ZDB-PUB-221108-20 IEA RHEA:11092 F glycerol-3-phosphate dehydrogenase 1 like wu:fi13g03|wu:fi45b08|zgc:92580 protein_coding_gene taxon:7955 20240129 RHEA `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P0A6S7 gpsA enables GO:0141153 GO_REF:0000116 IEA RHEA:11096 F Glycerol-3-phosphate dehydrogenase [NAD(P)+] gpsA|JW3583|b3608 protein taxon:83333 20240408 RHEA `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPBC3B8.01c arh1 enables GO:0015039 GO_REF:0000116 IEA RHEA:42312 F mitochondrial [2Fe-2S] cluster assembly NADPH-ferredoxin reductase Arh1 protein taxon:4896 20240129 RHEA `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`WB WBGene00009824 gpdh-1 enables GO:0047952 GO_REF:0000116 IEA RHEA:11092 F F47G4.3 gene taxon:6239 20230911 RHEA `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`WB WBGene00010778 gpdh-2 enables GO:0047952 GO_REF:0000116 IEA RHEA:11092 F K11H3.1 gene taxon:6239 20230911 RHEA `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 27

messages

• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`Xenbase XB-GENE-6255936 b3gnt5.S enables GO:0008457 GO_REF:0000116 IEA RHEA:23004 F UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 S homeolog b3gn-t5|b3gnt5-a|b3gnt5-b|beta3gn-t5 protein taxon:8355 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`Xenbase XB-GENE-955708 b3gnt5 enables GO:0008457 GO_REF:0000116 IEA RHEA:23004 F UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 b3gn-t5|b3gnt5-a|b3gnt5-b|beta3gn-t5 protein taxon:8364 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`Xenbase XB-GENE-955716 b3gnt5.L enables GO:0008457 GO_REF:0000116 IEA RHEA:23004 F UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 L homeolog b3gn-t5|b3gnt5-a|b3gnt5-b|beta3gn-t5 protein taxon:8355 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB F1N1Y2 B3GNT5 enables GO:0008457 GO_REF:0000116 IEA RHEA:23004 F Hexosyltransferase B3GNT5 protein taxon:9913 20240408 RHEA UniProtKB:F1N1Y2 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`dictyBase DDB_G0288933 cda enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F Probable cytidine deaminase cda|DDB_G0288933 protein taxon:44689 20240312 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB I3LAH9 CDA enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F Cytidine deaminase CDA protein taxon:9823 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABF6 cdd enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F Cytidine deaminase cdd|JW2131|b2143 protein taxon:83333 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`SGD S000004235 CDD1 enables GO:0047844 GO_REF:0000116 IEA F Cytidine deaminase YLR245C|cytidine deaminase protein taxon:559292 20240408 RHEA UniProtKB:Q06549 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC1556.04c cdd1 enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F cytidine deaminase Ccd1 pcd1 protein taxon:4896 20240129 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P32320 CDA enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F Cytidine deaminase CDA|CDD protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`WB WBGene00000391 cdd-1 enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F C47D2.2|tag-17 gene taxon:6239 20230911 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`WB WBGene00000392 cdd-2 enables GO:0047844 GO_REF:0000116 IEA RHEA:13433 F F49E8.4 gene taxon:6239 20230911 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`JaponicusDB SJAG_01673 cdd1 enables GO:0047844 GO_REF:0000107 IEA PomBase:SPAC1556.04c F cytidine deaminase Ccd1 protein taxon:4897 20240424 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB I3LJD8 PRKAA1 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F Acetyl-CoA carboxylase kinase PRKAA1 protein taxon:9823 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q09136 PRKAA1 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F 5'-AMP-activated protein kinase catalytic subunit alpha-1 PRKAA1|AMPK1 protein taxon:9823 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q28948 PRKAA2 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F 5'-AMP-activated protein kinase catalytic subunit alpha-2 PRKAA2|AMPK2 protein taxon:9823 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3387 Prkaa1 enables GO:0050405 GO_REF:0000116|RGD:1600115 IEA RHEA:20333 F protein kinase AMP-activated catalytic subunit alpha 1 gene taxon:10116 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 620893 Prkaa2 enables GO:0050405 GO_REF:0000116|RGD:1600115 IEA RHEA:20333 F protein kinase AMP-activated catalytic subunit alpha 2 gene taxon:10116 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P54646 PRKAA2 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F 5'-AMP-activated protein kinase catalytic subunit alpha-2 PRKAA2|AMPK|AMPK2 protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q13131 PRKAA1 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F 5'-AMP-activated protein kinase catalytic subunit alpha-1 PRKAA1|AMPK1 protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB F1MBG5 PRKAA1 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F Acetyl-CoA carboxylase kinase PRKAA1 protein taxon:9913 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB F1MQV7 PRKAA2 enables GO:0050405 GO_REF:0000116 IEA RHEA:20333 F 5'-AMP-activated protein kinase catalytic subunit alpha-2 PRKAA2 protein taxon:9913 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O60502 OGA enables GO:0102166 GO_REF:0000116 IEA RHEA:48892 F Protein O-GlcNAcase OGA|HEXC|KIAA0679|MEA5|MGEA5 protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O60502 OGA enables GO:0102167 GO_REF:0000116 IEA RHEA:48876 F Protein O-GlcNAcase OGA|HEXC|KIAA0679|MEA5|MGEA5 protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`SGD S000006024 FMP30 enables GO:0102200 GO_REF:0000116 IEA F Protein with a role in maintaining mitochondrial morphology YPL103C|N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D protein taxon:559292 20240408 RHEA UniProtKB:Q02883 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q6IQ20 NAPEPLD enables GO:0102200 GO_REF:0000116 IEA RHEA:33159 F N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D NAPEPLD|C7orf18 protein taxon:9606 20240408 RHEA `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q58CN9 NAPEPLD enables GO:0102200 GO_REF:0000116 IEA RHEA:33159 F N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D NAPEPLD protein taxon:9913 20240408 RHEA `