GORULE violations assigned by pombase

Contents

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPATRNATYR.01 SPATRNATYR.01 enables GO:0033410 GO_REF:0000111 IC GO:0033410 F tRNA Tyrosine tRNA NCBITaxon:4896 20150206 PomBase `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 7

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `