Group: pombase - Dataset: pombase

SUMMARY

This report generated on 2026-03-26

Associations: 64534
Lines in file (incl headers): 78080
Lines skipped: 13542

Header From Original Association File

!gaf-version: 2.2
!generated-by: UniProt
!date-generated: 2026-03-04 14:12
!go-version: http://purl.obolibrary.org/obo/go/releases/2026-03-01/extensions/go-plus.ofn

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

total: 0

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

total: 1

Messages

WARNING - Violates GO Rule: GORULE:0000007: IPI should not be used with catalytic activity molecular function terms -- ComplexPortal CPX-25780 rdrc_schpo enables GO:0003968 PMID:15607976 IPI F RNA-directed RNA polymerase complex cid12:hrr1:rdp1|RDR complex protein_complex taxon:284812 20241210 ComplexPortal

gorule-0000008

No annotations should be made to uninformative high level terms

total: 9

Messages

WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC186.08c ldh1 involved_in GO:0019752 GO_REF:0000002 IEA InterPro:IPR001557 P L-lactate dehydrogenase Ldh1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPAC186.08c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC24H6.10c aro4 involved_in GO:0019752 GO_REF:0000117 IEA ARBA:ARBA00027276 P phospho-2-dehydro-3-deoxyheptonate aldolase Aro4 aro3 protein NCBITaxon:4896 20260302 UniProt PomBase:SPAC24H6.10c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAP11E10.01 SPAP11E10.01 involved_in GO:0019752 GO_REF:0000117 IEA ARBA:ARBA00027276 P ornithine cyclodeaminase-like protein protein NCBITaxon:4896 20260302 UniProt PomBase:SPAP11E10.01
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAP8A3.07c aro3 involved_in GO:0019752 GO_REF:0000117 IEA ARBA:ARBA00027276 P phospho-2-dehydro-3-deoxyheptonate aldolase Aro3 aro4 protein NCBITaxon:4896 20260302 UniProt PomBase:SPAP8A3.07c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC1105.02c lys4 involved_in GO:0019752 GO_REF:0000002 IEA InterPro:IPR002034|InterPro:IPR011872 P homocitrate synthase protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC1105.02c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC1683.11c icl1 involved_in GO:0019752 GO_REF:0000002 IEA InterPro:IPR006254 P isocitrate lyase Icl1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC1683.11c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC19G7.02 abz2 involved_in GO:0019752 GO_REF:0000033 IBA PANTHER:PTN000214662|SGD:S000004902|TAIR:locus:2174433|UniProtKB:P0AB80|UniProtKB:P28305 P 4-amino-4-deoxychorismate lyase Abz2 protein NCBITaxon:4896 20221009 GO_Central PomBase:SPBC19G7.02
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC3E7.16c leu3 involved_in GO:0019752 GO_REF:0000002 IEA InterPro:IPR002034 P 2-isopropylmalate synthase Leu3 SPBC4F6.03c protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC3E7.16c
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC306.08c mdh1 involved_in GO:0019752 GO_REF:0000002 IEA InterPro:IPR001557 P malate dehydrogenase Mdh1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPCC306.08c

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

total: 0

gorule-0000013

Taxon-appropriate annotation check

total: 0

gorule-0000015

Dual species taxon check

total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

total: 3

Messages

WARNING - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column -- PomBase SPAC18G6.04c shm2 is_active_in GO:0005759 GO_REF:0000111 IC C serine hydroxymethyltransferase Shm2 protein NCBITaxon:4896 20260202 PomBase PomBase:SPAC18G6.04c
WARNING - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column -- PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09
WARNING - Violates GO Rule: GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column -- PomBase SPCC584.04 sup35 enables GO:0000287 PMID:15099522 IC F cytoplasmic translation release factor class II, GTPase eRF3 erf3|sup9 protein NCBITaxon:4896 20220228 DisProt has_input(ChEBI:18420) PomBase:SPCC584.04

gorule-0000017

IDA annotations must not have a With/From entry

total: 0

gorule-0000018

IPI annotations require a With/From entry

total: 1

Messages

WARNING - Violates GO Rule: GORULE:0000018: IPI annotations require a With/From entry -- ComplexPortal CPX-25780 rdrc_schpo enables GO:0003968 PMID:15607976 IPI F RNA-directed RNA polymerase complex cid12:hrr1:rdp1|RDR complex protein_complex taxon:284812 20241210 ComplexPortal

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

total: 81

Messages

ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0000053) -- PomBase SPBC428.05c arg12 involved_in GO:0000053 GO_REF:0000033 IBA PANTHER:PTN000172504|RGD:2163|UniProtKB:P00966 P argininosuccinate synthase Arg12 protein NCBITaxon:4896 20170228 GO_Central PomBase:SPBC428.05c
ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006522) -- PomBase SPBC359.02 alr2 involved_in GO:0006522 GO_REF:0000002 IEA InterPro:IPR000821 P alanine racemase Alr2 protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC359.02
ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006522) -- PomBase SPBC359.02 alr2 involved_in GO:0006522 GO_REF:0000024 ISS PomBase:SPCC965.08c P alanine racemase Alr2 protein NCBITaxon:4896 20040611 PomBase PomBase:SPBC359.02
ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0006522) -- PomBase SPCC965.08c alr1 involved_in GO:0006522 GO_REF:0000002 IEA InterPro:IPR000821 P alanine racemase Alr1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPCC965.08c
ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019284) -- PomBase SPAC57A7.07c SPAC57A7.07c involved_in GO:0019284 GO_REF:0000111 IC GO:0008898 P homocysteine methyltransferase protein NCBITaxon:4896 20250312 PomBase PomBase:SPAC57A7.07c
ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019912) -- PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000784) -- PomBase SPAC6G9.13c bqt1 enables GO:0005515 PMID:16615890 IPI UniProtKB:Q09825 F bouquet formation protein Bqt1 mug23|rec26 protein NCBITaxon:4896 20260228 IntAct occurs_in(GO:0005635)|occurs_in(GO:0005634)|occurs_in(GO:0000784) PomBase:SPAC6G9.13c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0000784) -- PomBase SPBC12D12.01 sad1 enables GO:0005515 PMID:16615890 IPI UniProtKB:Q92358 F spindle pole body SUN domain protein Sad1 SPBC16H5.01c protein NCBITaxon:4896 20260228 IntAct occurs_in(GO:0005635)|occurs_in(GO:0005634)|occurs_in(GO:0000784) PomBase:SPBC12D12.01
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPAC1006.01 psp3 is_active_in GO:0005615 GO_REF:0000033 IBA MGI:MGI:2140260|PANTHER:PTN002465725|RGD:728909|UniProtKB:Q8NBP7 C vacuolar serine protease Psp3 protein NCBITaxon:4896 20181004 GO_Central PomBase:SPAC1006.01
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPAC1039.02 efn2 enables GO:0008253 PMID:39660919 EXP F extracellular 5'-nucleotidase, human NT5E family Efn2 protein NCBITaxon:4896 20241213 PomBase happens_during(GO:0016036),occurs_in(GO:0005615) PomBase:SPAC1039.02
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPAC4A8.04 isp6 is_active_in GO:0005615 GO_REF:0000033 IBA MGI:MGI:2140260|PANTHER:PTN002465725|RGD:728909|UniProtKB:Q8NBP7 C vacuolar serine protease Isp6 prb1 protein NCBITaxon:4896 20181004 GO_Central PomBase:SPAC4A8.04
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPBC337.07c ecm14 is_active_in GO:0005615 GO_REF:0000033 IBA PANTHER:PTN000194073|RGD:71035|UniProtKB:P15085|UniProtKB:Q9UI42 C pseudopeptidase Ecm14 ppp28 protein NCBITaxon:4896 20240729 GO_Central PomBase:SPBC337.07c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPBPB2B2.06c efn1 enables GO:0008253 PMID:39660919 EXP F extracellular 5'-nucleotidase, human NT5E family Efn1 protein NCBITaxon:4896 20241213 PomBase happens_during(GO:0016036),occurs_in(GO:0005615) PomBase:SPBPB2B2.06c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0005615) -- PomBase SPBPJ4664.02 SPBPJ4664.02 is_active_in GO:0005615 GO_REF:0000033 IBA FB:FBgn0033652|PANTHER:PTN002205845 C flocculin-like protein protein NCBITaxon:4896 20230517 GO_Central PomBase:SPBPJ4664.02
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0016021) -- PomBase SPAC13D6.01 pof14 enables GO:0005515 PMID:17016471 IPI UniProtKB:P36596 F F-box protein Pof14 protein NCBITaxon:4896 20260228 IntAct occurs_in(GO:0016021) PomBase:SPAC13D6.01
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0016021) -- PomBase SPBC646.05c erg9 enables GO:0005515 PMID:17016471 IPI UniProtKB:Q10223 F farnesyldiphosphate:farnesyldiphosphatefarnesyltransferase (squalene synthase) Erg9 protein NCBITaxon:4896 20260228 IntAct occurs_in(GO:0016021) PomBase:SPBC646.05c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019264) -- PomBase SPAC18G6.04c shm2 involved_in GO:0019264 GO_REF:0000002 IEA InterPro:IPR001085 P serine hydroxymethyltransferase Shm2 protein NCBITaxon:4896 20260302 InterPro PomBase:SPAC18G6.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019264) -- PomBase SPAC18G6.04c shm2 involved_in GO:0019264 GO_REF:0000033 IBA FB:FBgn0029823|PANTHER:PTN000188065|RGD:1308582|RGD:1312011|UniProtKB:P0A825 P serine hydroxymethyltransferase Shm2 protein NCBITaxon:4896 20180504 GO_Central PomBase:SPAC18G6.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019264) -- PomBase SPAC24C9.12c shm1 involved_in GO:0019264 GO_REF:0000002 IEA InterPro:IPR001085 P serine hydroxymethyltransferase Shm1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPAC24C9.12c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019264) -- PomBase SPAC24C9.12c shm1 involved_in GO:0019264 GO_REF:0000033 IBA FB:FBgn0029823|PANTHER:PTN000188065|RGD:1308582|RGD:1312011|UniProtKB:P0A825 P serine hydroxymethyltransferase Shm1 protein NCBITaxon:4896 20180504 GO_Central PomBase:SPAC24C9.12c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019427) -- PomBase SPAC1952.09c ach1 involved_in GO:0019427 GO_REF:0000111 IC GO:0008775 P acetyl-CoA hydrolase/succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial Ach1 protein NCBITaxon:4896 20250124 PomBase PomBase:SPAC1952.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019427) -- PomBase SPCC191.02c acs1 involved_in GO:0019427 GO_REF:0000002 IEA InterPro:IPR011904 P acetyl-CoA ligase SPCC417.14c protein NCBITaxon:4896 20260302 InterPro PomBase:SPCC191.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC17C9.02c lys7 involved_in GO:0019878 GO_REF:0000033 IBA PANTHER:PTN000954835|PomBase:SPAC17C9.02c|SGD:S000003122 P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein NCBITaxon:4896 20251029 GO_Central PomBase:SPAC17C9.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC17C9.02c lys7 involved_in GO:0019878 PMID:3142867 IMP P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein NCBITaxon:4896 20130924 PomBase PomBase:SPAC17C9.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC227.18 lys3 involved_in GO:0019878 GO_REF:0000033 IBA PANTHER:PTN000875292|PomBase:SPAC227.18 P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20251029 GO_Central PomBase:SPAC227.18
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC227.18 lys3 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20260227 UniProt PomBase:SPAC227.18
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:17622533 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC227.18
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:3142867 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20050509 PomBase PomBase:SPAC227.18
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC31G5.04 lys12 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P homoisocitrate dehydrogenase Lys12 protein NCBITaxon:4896 20260227 UniProt PomBase:SPAC31G5.04
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC31G5.04 lys12 involved_in GO:0019878 PMID:17622533 IMP P homoisocitrate dehydrogenase Lys12 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC31G5.04
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC343.16 lys2 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P homoaconitate hydratase Lys2 protein NCBITaxon:4896 20260227 UniProt PomBase:SPAC343.16
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:17622533 IMP P homoaconitate hydratase Lys2 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC343.16
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:3142867 IMP P homoaconitate hydratase Lys2 protein NCBITaxon:4896 20130924 PomBase PomBase:SPAC343.16
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAC56E4.03 SPAC56E4.03 involved_in GO:0019878 GO_REF:0000033 IBA CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000922988 P aromatic aminotransferase protein NCBITaxon:4896 20181029 GO_Central PomBase:SPAC56E4.03
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAP7G5.04c lys1 involved_in GO:0019878 GO_REF:0000033 IBA CGD:CAL0000183678|PANTHER:PTN001186117|PomBase:SPAP7G5.04c|SGD:S000000319 P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20250626 GO_Central PomBase:SPAP7G5.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAP7G5.04c lys1 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20260227 UniProt PomBase:SPAP7G5.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAP7G5.04c lys1 involved_in GO:0019878 GO_REF:0000117 IEA ARBA:ARBA00085551 P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20260302 UniProt PomBase:SPAP7G5.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:3142867 IMP P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20130924 PomBase PomBase:SPAP7G5.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:8590464 IMP P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20121004 PomBase PomBase:SPAP7G5.04c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 enables GO:0004410 PMID:20089861 IDA F homocitrate synthase protein NCBITaxon:4896 20230705 PomBase part_of(GO:0019878) PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 GO_REF:0000002 IEA InterPro:IPR011872 P homocitrate synthase protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 GO_REF:0000033 IBA PANTHER:PTN002231832|PomBase:SPBC1105.02c|SGD:S000002289|SGD:S000002341|UniProtKB:Q4WPU2 P homocitrate synthase protein NCBITaxon:4896 20220922 GO_Central PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P homocitrate synthase protein NCBITaxon:4896 20260227 UniProt PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 GO_REF:0000117 IEA ARBA:ARBA00085551 P homocitrate synthase protein NCBITaxon:4896 20260302 UniProt PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:16299000 IMP P homocitrate synthase protein NCBITaxon:4896 20050429 PomBase PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:17622533 IMP P homocitrate synthase protein NCBITaxon:4896 20130920 PomBase PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:20089861 EXP P homocitrate synthase protein NCBITaxon:4896 20230705 PomBase PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:3142867 IMP P homocitrate synthase protein NCBITaxon:4896 20130924 PomBase PomBase:SPBC1105.02c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC1773.13 SPBC1773.13 involved_in GO:0019878 GO_REF:0000033 IBA CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000922988 P aromatic aminotransferase protein NCBITaxon:4896 20181029 GO_Central PomBase:SPBC1773.13
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC3B8.03 lys9 involved_in GO:0019878 GO_REF:0000033 IBA PANTHER:PTN000875327|SGD:S000005333 P saccharopine dehydrogenase protein NCBITaxon:4896 20251029 GO_Central PomBase:SPBC3B8.03
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBC3B8.03 lys9 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P saccharopine dehydrogenase protein NCBITaxon:4896 20260227 UniProt PomBase:SPBC3B8.03
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPBP4H10.15 aco2 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P mitochondrial ribosomal protein subunit L21/aconitate hydratase, fusion protein mrpl49 protein NCBITaxon:4896 20260227 UniProt PomBase:SPBP4H10.15
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019878) -- PomBase SPCC569.07 SPCC569.07 involved_in GO:0019878 GO_REF:0000033 IBA CGD:CAL0000187633|CGD:CAL0000197694|PANTHER:PTN000922988 P aromatic aminotransferase protein NCBITaxon:4896 20181029 GO_Central PomBase:SPCC569.07
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0030641) -- PomBase SPAC8C9.16c oxr1 involved_in GO:0030641 GO_REF:0000024 ISO SGD:S000006117 P V-type ATPase inhibitor and disassembly protein in response to oxidative stress Oxr1 mug63 protein NCBITaxon:4896 20220214 PomBase PomBase:SPAC8C9.16c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC27F1.05c SPAC27F1.05c involved_in GO:0042450 GO_REF:0000033 IBA PANTHER:PTN000944733|PomBase:SPCC777.09c P aminotransferase class-III, possible transaminase, unknown specificity, implicated in amino acid or cofactor metabolism protein NCBITaxon:4896 20251224 GO_Central PomBase:SPAC27F1.05c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.09c arg11 involved_in GO:0042450 PMID:1313366 IMP P N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase protein NCBITaxon:4896 20030613 PomBase PomBase:SPAC4G9.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.09c arg11 involved_in GO:0042450 PMID:32896087 EXP P N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase protein NCBITaxon:4896 20240717 PomBase PomBase:SPAC4G9.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.10 arg3 involved_in GO:0042450 GO_REF:0000033 IBA PANTHER:PTN000150424|PomBase:SPAC4G9.10 P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20170228 GO_Central PomBase:SPAC4G9.10
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:1313366 IMP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20040917 PomBase PomBase:SPAC4G9.10
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:18849471 IMP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20140612 PomBase PomBase:SPAC4G9.10
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:32896087 EXP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20240717 PomBase PomBase:SPAC4G9.10
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1271.14 aga1 involved_in GO:0042450 PMID:32896087 EXP P acetyl-CoA:L-glutamate N-acetyltransferase arg7 protein NCBITaxon:4896 20201219 PomBase PomBase:SPBC1271.14
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1539.03c arg41 involved_in GO:0042450 GO_REF:0000002 IEA InterPro:IPR009049 P argininosuccinate lyase protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC1539.03c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1539.03c arg41 involved_in GO:0042450 GO_REF:0000033 IBA PANTHER:PTN000154674|PomBase:SPBC1539.03c|SGD:S000001060 P argininosuccinate lyase protein NCBITaxon:4896 20241121 GO_Central PomBase:SPBC1539.03c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1539.03c arg41 involved_in GO:0042450 PMID:32896087 EXP P argininosuccinate lyase protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC1539.03c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1773.14 arg7 involved_in GO:0042450 GO_REF:0000002 IEA InterPro:IPR009049 P argininosuccinate lyase protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC1773.14
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC1773.14 arg7 involved_in GO:0042450 GO_REF:0000033 IBA PANTHER:PTN000154674|PomBase:SPBC1539.03c|SGD:S000001060 P argininosuccinate lyase protein NCBITaxon:4896 20241121 GO_Central PomBase:SPBC1773.14
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC215.08c arg4 involved_in GO:0042450 PMID:32896087 EXP P arginine specific carbamoyl-phosphate synthase Arg4 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC215.08c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC428.05c arg12 involved_in GO:0042450 PMID:32896087 EXP P argininosuccinate synthase Arg12 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC428.05c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC56F2.09c arg5 involved_in GO:0042450 PMID:32896087 EXP P arginine specific carbamoyl-phosphate synthase subunit Arg5 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC56F2.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPBC725.14 arg6 involved_in GO:0042450 PMID:32896087 EXP P acetylglutamate synthase Arg6 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC725.14
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPCC777.09c arg1 involved_in GO:0042450 GO_REF:0000033 IBA PANTHER:PTN000944733|PomBase:SPCC777.09c P acetylornithine aminotransferase protein NCBITaxon:4896 20251224 GO_Central PomBase:SPCC777.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0042450) -- PomBase SPCC777.09c arg1 involved_in GO:0042450 PMID:32896087 EXP P acetylornithine aminotransferase protein NCBITaxon:4896 20240717 PomBase PomBase:SPCC777.09c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045269) -- PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045269) -- PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045269) -- PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045269) -- PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0051267) -- PomBase SPAC13G6.03 gpi7 enables GO:0051267 GO_REF:0000033 IBA PANTHER:PTN000552977|SGD:S000003598|UniProtKB:Q5H8A4 F Pig-G, CP2 mannose-ethanolamine phosphotransferase GPI anchor biosynthesis protein Gpi7 protein NCBITaxon:4896 20200809 GO_Central PomBase:SPAC13G6.03
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0051722) -- PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0051722) -- PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c
WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:1990181) -- PomBase SPCC4B3.18 ppc1 involved_in GO:1990181 PMID:23091701 IMP P phosphopantothenate-cysteine ligase Cab2 cab2 protein NCBITaxon:4896 20130905 PomBase PomBase:SPCC4B3.18

gorule-0000022

Check for, and filter, annotations made to retracted publications

total: 0

gorule-0000027

Each identifier in GAF is valid

total: 5

Messages

WARNING - Invalid identifier: GORULE:0000027: ChEBI not found in list of database names in dbxrefs (ChEBI:3312) -- PomBase SPAC3G6.02 dss1 enables GO:0005509 PMID:34439840 EXP F proteasome receptor/ubiquitin ligase adaptor Dss1 rpn15|sem1 protein NCBITaxon:4896 20220228 DisProt has_input(ChEBI:3312) PomBase:SPAC3G6.02
WARNING - Invalid identifier: GORULE:0000027: ChEBI not found in list of database names in dbxrefs (ChEBI:16337) -- PomBase SPBC19C7.10 bqt4 enables GO:0008289 PMID:38825008 IDA F integral nuclear inner membrane protein Bqt4 protein NCBITaxon:4896 20220228 DisProt has_input(ChEBI:16337) PomBase:SPBC19C7.10
WARNING - Invalid identifier: GORULE:0000027: ChEBI not found in list of database names in dbxrefs (ChEBI:16337) -- PomBase SPBC19C7.10 bqt4 enables GO:0008289 PMID:38825008 IPI ChEBI:16337,ChEBI:28494 F integral nuclear inner membrane protein Bqt4 protein NCBITaxon:4896 20220228 DisProt PomBase:SPBC19C7.10
WARNING - Invalid identifier: GORULE:0000027: ChEBI not found in list of database names in dbxrefs (ChEBI:28494) -- PomBase SPBC19C7.10 bqt4 enables GO:0008289 PMID:38825008 IPI ChEBI:16337,ChEBI:28494 F integral nuclear inner membrane protein Bqt4 protein NCBITaxon:4896 20220228 DisProt PomBase:SPBC19C7.10
WARNING - Invalid identifier: GORULE:0000027: ChEBI not found in list of database names in dbxrefs (ChEBI:18420) -- PomBase SPCC584.04 sup35 enables GO:0000287 PMID:15099522 IC F cytoplasmic translation release factor class II, GTPase eRF3 erf3|sup9 protein NCBITaxon:4896 20220228 DisProt has_input(ChEBI:18420) PomBase:SPCC584.04

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

total: 0

gorule-0000029

IEAs should be less than one year old.

total: 0

gorule-0000030

Only valid GO_REFs are allowed

total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

total: 0

gorule-0000043

Check for valid combination of evidence code, with/from rules and GO_REF

total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

total: 10

Messages

WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC16A10.07c taz1 enables GO:0042803 GO_REF:0000002 IEA InterPro:IPR013867 F shelterin complex subunit Taz1 lot3|myb|myb1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPAC16A10.07c
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC222.11 hem13 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P36551 F coproporphyrinogen III oxidase Hem13 protein NCBITaxon:4896 20091105 UniProt PomBase:SPAC222.11
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC23D3.04c gpd2 enables GO:0042803 GO_REF:0000002 IEA InterPro:IPR017751 F glycerol-3-phosphate dehydrogenase Gpd2 protein NCBITaxon:4896 20260302 InterPro PomBase:SPAC23D3.04c
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC3F10.04 gsa1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q08220 F glutathione synthetase large and small subunit Gsa1 gsh2 protein NCBITaxon:4896 20091111 UniProt PomBase:SPAC3F10.04
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC644.14c rad51 involved_in GO:0051260 PMID:15899844 IPI UniProtKB:P36601 P RecA family recombinase Rad51/Rhp51 loh4|rhp51 protein NCBITaxon:4896 20061012 UniProt PomBase:SPAC644.14c
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPAC8E11.03c dmc1 involved_in GO:0051260 PMID:15899844 IPI UniProtKB:O42634 P RecA family ATPase Dmc1 dmp1 protein NCBITaxon:4896 20061012 UniProt PomBase:SPAC8E11.03c
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPBC19G7.13 tbf1 enables GO:0042803 GO_REF:0000002 IEA InterPro:IPR013867 F DNA binding factor Trf1 trf1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC19G7.13
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPBC215.05 gpd1 enables GO:0042803 GO_REF:0000002 IEA InterPro:IPR017751 F glycerol-3-phosphate dehydrogenase Gpd1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC215.05
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPBC3B9.19 mge1 enables GO:0042803 GO_REF:0000002 IEA InterPro:IPR000740 F mitochondrial [2Fe-2S] cluster assembly and protein import chaperone Mge1 protein NCBITaxon:4896 20260302 InterPro PomBase:SPBC3B9.19
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PomBase SPCC320.14 sry1 enables GO:0042803 PMID:19640845 IPI UniProtKB:O59791 F serine racemase Sry1 SPCC330.15c protein NCBITaxon:4896 20101221 UniProt PomBase:SPCC320.14

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

total: 0

gorule-0000055

References should have only one ID per ID space

total: 0

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

total: 0

gorule-0000061

Allowed gene product to term relations (gp2term)

total: 20

Messages

WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC1006.03c red1 part_of GO:0005634 PMID:21317872 IDA C MTREC (exosome adaptor) complex subunit Red1 iss3 protein NCBITaxon:4896 20161120 CACAO PomBase:SPAC1006.03c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC13G6.03 gpi7 part_of GO:0005783 PMID:10641037 IDA C Pig-G, CP2 mannose-ethanolamine phosphotransferase GPI anchor biosynthesis protein Gpi7 protein NCBITaxon:4896 20140405 CACAO PomBase:SPAC13G6.03
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC1834.07 klp3 part_of GO:0005881 PMID:10641037 IDA C kinesin-like protein Klp3 krp1 protein NCBITaxon:4896 20140405 CACAO PomBase:SPAC1834.07
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC18G6.03 ypt3 part_of GO:0005737 PMID:27630265 IDA C Rab11 family GTPase Ypt3 protein NCBITaxon:4896 20170321 CACAO PomBase:SPAC18G6.03
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC18G6.03 ypt3 part_of GO:0035838 PMID:27082518 IDA C Rab11 family GTPase Ypt3 protein NCBITaxon:4896 20170203 CACAO PomBase:SPAC18G6.03
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC18G6.03 ypt3 part_of GO:0035974 PMID:27630265 IDA C Rab11 family GTPase Ypt3 protein NCBITaxon:4896 20170219 CACAO PomBase:SPAC18G6.03
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC18G6.10 lem2 part_of GO:0034506 PMID:27451393 IDA C LEM domain nuclear inner membrane protein Heh1/Lem2 heh1 protein NCBITaxon:4896 20170326 CACAO PomBase:SPAC18G6.10
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC22A12.15c bip1 part_of GO:0005783 PMID:10641037 IDA C ER heat shock protein BiP bip protein NCBITaxon:4896 20140405 CACAO PomBase:SPAC22A12.15c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC22A12.15c bip1 part_of GO:0005783 PMID:8227200 IDA C ER heat shock protein BiP bip protein NCBITaxon:4896 20140405 CACAO PomBase:SPAC22A12.15c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC23C4.10 sec2 part_of GO:0090619 PMID:27630562 IDA C RabGEF Sec2 protein NCBITaxon:4896 20170304 CACAO PomBase:SPAC23C4.10
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC6F6.15 ypt5 part_of GO:0031901 PMID:8374169 IDA C GTPase Ypt5 protein NCBITaxon:4896 20140406 CACAO PomBase:SPAC6F6.15
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPAC9E9.07c ypt2 part_of GO:0035974 PMID:27630265 IMP C GTPase Ypt2 protein NCBITaxon:4896 20170218 CACAO PomBase:SPAC9E9.07c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPBC119.05c lsb1 part_of GO:0005737 PMID:26542710 IDA C Wiskott-Aldrich syndrome homolog binding protein Lsb1 protein NCBITaxon:4896 20160209 CACAO PomBase:SPBC119.05c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPBC216.07c tor2 part_of GO:0005634 PMID:26912660 IDA C TORC1 serine/threonine protein kinase Tor2 SPBC646.01c protein NCBITaxon:4896 20160307 CACAO PomBase:SPBC216.07c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC1183.12 spo13 part_of GO:0035974 PMID:27630265 IDA C sporulation specific RabGEF Spo13 SPNGAF60 protein NCBITaxon:4896 20170218 CACAO PomBase:SPCC1183.12
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC1183.12 spo13 part_of GO:0035974 PMID:27630265 IMP C sporulation specific RabGEF Spo13 SPNGAF60 protein NCBITaxon:4896 20170321 CACAO PomBase:SPCC1183.12
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC24B10.07 gad8 part_of GO:0005737 PMID:26912660 IDA C serine/threonine protein kinase (AGC family) Gad8 protein NCBITaxon:4896 20160307 CACAO PomBase:SPCC24B10.07
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC306.09c cap1 part_of GO:0030428 PMID:26542710 IDA C adenylyl cyclase-associated protein Cap1 cap protein NCBITaxon:4896 20160205 CACAO PomBase:SPCC306.09c
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC4G3.11 nur1 part_of GO:0034506 PMID:27451393 IDA C Lem2-Nur1 complex subunit Nur1 mug154 protein NCBITaxon:4896 20170409 CACAO PomBase:SPCC4G3.11
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0002325, RO:0001025, RO:0002432. Repaired to RO:0001025 -- PomBase SPCC736.04c gma12 part_of GO:0000139 PMID:7522655 IDA C Golgi alpha-1,2-galactosyltransferase Gma12 protein NCBITaxon:4896 20140405 CACAO PomBase:SPCC736.04c

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

total: 0

gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

total: 0

gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

total: 11

Messages

WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAC12B10.06c sdh5 involved_in GO:0018293 GO_REF:0000024 ISS UniProtKB:Q08230 P succinate dehydrogenase complex assembly protein Sdh5 emi5 protein NCBITaxon:4896 20090727 UniProt PomBase:SPAC12B10.06c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAC167.02 ptb1 involved_in GO:0018344 GO_REF:0000024 ISS UniProtKB:Q08603 P geranylgeranyltransferase II beta subunit Ptb1 protein NCBITaxon:4896 20131219 UniProt PomBase:SPAC167.02
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAC1687.15 gsk3 involved_in GO:0006468 PMID:12773390 IGI UniProtKB:Q9Y738 P serine/threonine protein kinase Gsk3 skp1 protein NCBITaxon:4896 20170309 UniProt PomBase:SPAC1687.15
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAC2E1P5.04c cwg2 involved_in GO:0018344 GO_REF:0000024 ISS UniProtKB:P53609 P geranylgeranyltransferase I beta subunit Cwg2 orb7 protein NCBITaxon:4896 20131218 UniProt PomBase:SPAC2E1P5.04c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAC2E1P5.04c cwg2 involved_in GO:0018344 GO_REF:0000024 ISS UniProtKB:P53610 P geranylgeranyltransferase I beta subunit Cwg2 orb7 protein NCBITaxon:4896 20131219 UniProt PomBase:SPAC2E1P5.04c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAPB1A10.04c cwp1 involved_in GO:0018343 GO_REF:0000024 ISS UniProtKB:P49354 P geranylgeranyltransferase I and farnesyltransferase alpha subunit Cwp1 protein NCBITaxon:4896 20131218 UniProt PomBase:SPAPB1A10.04c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPAPB1A10.04c cwp1 involved_in GO:0018344 GO_REF:0000024 ISS UniProtKB:P49354 P geranylgeranyltransferase I and farnesyltransferase alpha subunit Cwp1 protein NCBITaxon:4896 20131218 UniProt PomBase:SPAPB1A10.04c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPBC16D10.09 pcn1 involved_in GO:1900264 PMID:10219083 IDA P PCNA pcn protein NCBITaxon:4896 20191203 UniProt has_input(ComplexPortal:CPX-2098) PomBase:SPBC16D10.09
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPBC530.14c dsk1 involved_in GO:0018105 PMID:26167880 IGI UniProtKB:O74555 P SR protein-specific kinase Dsk1 protein NCBITaxon:4896 20160217 CACAO PomBase:SPBC530.14c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPBC6B1.08c ofd1 involved_in GO:0018188 PMID:24550462 IDA P hypoxic oxygen sensor, prolyl-3,4-dihydroxylase Ofd1 uS12 protein NCBITaxon:4896 20140404 UniProt PomBase:SPBC6B1.08c
WARNING - Violates GO Rule: GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed -- PomBase SPCC1620.05 bet4 involved_in GO:0018344 GO_REF:0000024 ISS UniProtKB:Q08602 P Rab geranylgeranyltransferase alpha subunit Bet4 protein NCBITaxon:4896 20131219 UniProt PomBase:SPCC1620.05

other

total: 0

GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0004693 cyclin-dependent protein serine/threonine kinase activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0035433 acetate transmembrane transport AnnotationPropagation P GO:0015123 acetate transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010485 histone H4 acetyltransferase activity IBA
GO:0010998 regulation of translational initiation by eIF2 alpha phosphorylation AnnotationPropagation P GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006488 dolichol-linked oligosaccharide biosynthetic process AnnotationPropagation P GO:0042281 dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:1903712 cysteine transmembrane transport AnnotationPropagation P GO:0033229 cysteine transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004708 MAP kinase kinase activity IBA
GO:0015790 UDP-xylose transmembrane transport AnnotationPropagation P GO:0005464 UDP-xylose transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0097020 COPII receptor activity IBA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0017148 negative regulation of translation AnnotationPropagation P GO:0000900 mRNA regulatory element binding translation repressor activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin-cargo adaptor activity IBA
GO:0051596 methylglyoxal catabolic process AnnotationPropagation P GO:0019172 glyoxalase III activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0015085 calcium ion transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0010484 histone H3 acetyltransferase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070184 mitochondrial tyrosyl-tRNA aminoacylation IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0015878 biotin transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:0035461 vitamin transmembrane transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015225 biotin transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin-cargo adaptor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 transmembrane protein transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0015825 L-serine transport AnnotationPropagation P GO:0015194 L-serine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015194 L-serine transmembrane transporter activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015174 basic amino acid transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0004839 ubiquitin activating enzyme activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:0090150 establishment of protein localization to membrane AnnotationPropagation P GO:0032977 membrane insertase activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0000316 sulfite transmembrane transport AnnotationPropagation P GO:0000319 sulfite transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:1901962 S-adenosyl-L-methionine transmembrane transport AnnotationPropagation P GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0008519 ammonium channel activity IBA
GO:0106005 RNA 5'-cap (guanine-N7)-methylation AnnotationPropagation P GO:0004482 mRNA 5'-cap (guanine-N7-)-methyltransferase activity IBA
GO:0006370 7-methylguanosine mRNA capping AnnotationPropagation P GO:0004482 mRNA 5'-cap (guanine-N7-)-methyltransferase activity IBA
GO:0051596 methylglyoxal catabolic process AnnotationPropagation P GO:0019172 glyoxalase III activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0008324 monoatomic cation transmembrane transporter activity IBA
GO:0071421 manganese ion transmembrane transport AnnotationPropagation P GO:0005384 manganese ion transmembrane transporter activity IBA
GO:0042823 pyridoxal 5'-phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine phosphate oxidase activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042054 histone methyltransferase activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0005381 iron ion transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042776 proton motive force-driven mitochondrial ATP synthesis IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:1904668 positive regulation of ubiquitin protein ligase activity AnnotationPropagation P GO:1990757 ubiquitin ligase activator activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045040 protein insertion into mitochondrial outer membrane IBA
GO:1903790 guanine nucleotide transmembrane transport AnnotationPropagation P GO:0001409 guanine nucleotide transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071039 nuclear polyadenylation-dependent CUT catabolic process IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin-cargo adaptor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0072354 histone H3T3 kinase activity IBA
GO:0019344 L-cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0015718 monocarboxylic acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0015812 gamma-aminobutyric acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042054 histone methyltransferase activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1904668 positive regulation of ubiquitin protein ligase activity AnnotationPropagation P GO:1990757 ubiquitin ligase activator activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0005227 calcium-activated cation channel activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0000226 microtubule cytoskeleton organization AnnotationPropagation P GO:0061863 microtubule plus end polymerase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0004479 methionyl-tRNA formyltransferase activity IBA
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA AnnotationPropagation P GO:0004479 methionyl-tRNA formyltransferase activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005634 nucleus AnnotationPropagation C GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034982 mitochondrial protein processing IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0003713 transcription coactivator activity IBA
GO:0006366 transcription by RNA polymerase II AnnotationPropagation P GO:0016251 RNA polymerase II general transcription initiation factor activity IBA
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity IBA
GO:0034204 lipid translocation AnnotationPropagation P GO:0140326 ATPase-coupled intramembrane lipid carrier activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070126 mitochondrial translational termination IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0004407 histone deacetylase activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0140053 mitochondrial gene expression IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070158 mitochondrial seryl-tRNA aminoacylation IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070899 mitochondrial tRNA wobble uridine modification IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0006325 chromatin organization AnnotationPropagation P GO:0140463 chromatin-protein adaptor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045040 protein insertion into mitochondrial outer membrane IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0140053 mitochondrial gene expression IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015718 monocarboxylic acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0015812 gamma-aminobutyric acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0005634 nucleus AnnotationPropagation C GO:0033621 nuclear mRNA surveillance of meiosis-specific transcripts IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004708 MAP kinase kinase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070124 mitochondrial translational initiation IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0016192 vesicle-mediated transport AnnotationPropagation P GO:0035615 clathrin-cargo adaptor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:1990180 mitochondrial tRNA 3'-end processing IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:0051596 methylglyoxal catabolic process AnnotationPropagation P GO:0019172 glyoxalase III activity IBA
GO:0098734 macromolecule depalmitoylation AnnotationPropagation P GO:0008474 palmitoyl-(protein) hydrolase activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0017121 plasma membrane phospholipid scrambling AnnotationPropagation P GO:0017128 phospholipid scramblase activity IBA
GO:0051168 nuclear export AnnotationPropagation P GO:0005049 nuclear export signal receptor activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0035269 protein O-linked glycosylation via mannose AnnotationPropagation P GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015174 basic amino acid transmembrane transporter activity IBA
GO:0072334 UDP-galactose transmembrane transport AnnotationPropagation P GO:0005459 UDP-galactose transmembrane transporter activity IBA
GO:0015718 monocarboxylic acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0015812 gamma-aminobutyric acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:0035434 copper ion transmembrane transport AnnotationPropagation P GO:0005375 copper ion transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0032931 histone H3K56 acetyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0003714 transcription corepressor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IBA
GO:0015851 nucleobase transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0022904 respiratory electron transport chain AnnotationPropagation P GO:0004174 electron-transferring-flavoprotein dehydrogenase activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034553 mitochondrial respiratory chain complex II assembly IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0032454 histone H3K9 demethylase activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042054 histone methyltransferase activity IBA
GO:0015914 phospholipid transport AnnotationPropagation P GO:1990050 phosphatidic acid transfer activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:1990050 phosphatidic acid transfer activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix IBA
GO:0007010 cytoskeleton organization AnnotationPropagation P GO:0005200 structural constituent of cytoskeleton IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
GO:0015718 monocarboxylic acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0015812 gamma-aminobutyric acid transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial respiratory chain complex IV assembly IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032979 protein insertion into mitochondrial inner membrane from matrix IBA
GO:0015816 glycine transport AnnotationPropagation P GO:0015187 glycine transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015187 glycine transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015187 glycine transmembrane transporter activity IBA
GO:0070588 calcium ion transmembrane transport AnnotationPropagation P GO:0008331 high voltage-gated calcium channel activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0015791 polyol transmembrane transport AnnotationPropagation P GO:0005366 myo-inositol:proton symporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005366 myo-inositol:proton symporter activity IBA
GO:0015798 myo-inositol transport AnnotationPropagation P GO:0005366 myo-inositol:proton symporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0005227 calcium-activated cation channel activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 transmembrane protein transporter activity IBA
GO:0098656 monoatomic anion transmembrane transport AnnotationPropagation P GO:0008308 voltage-gated monoatomic anion channel activity IBA
GO:0006096 glycolytic process AnnotationPropagation P GO:0004743 pyruvate kinase activity IBA
GO:0005773 vacuole AnnotationPropagation C GO:0007039 protein catabolic process in the vacuole IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0032527 protein exit from endoplasmic reticulum IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0008519 ammonium channel activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0070150 mitochondrial glycyl-tRNA aminoacylation IBA
GO:0002943 tRNA dihydrouridine synthesis AnnotationPropagation P GO:0017150 tRNA dihydrouridine synthase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015813 L-glutamate transmembrane transport AnnotationPropagation P GO:0005313 L-glutamate transmembrane transporter activity IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015174 basic amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:1904668 positive regulation of ubiquitin protein ligase activity AnnotationPropagation P GO:1990757 ubiquitin ligase activator activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0034551 mitochondrial respiratory chain complex III assembly IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0007010 cytoskeleton organization AnnotationPropagation P GO:0005200 structural constituent of cytoskeleton IBA
GO:0001188 RNA polymerase I preinitiation complex assembly AnnotationPropagation P GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding IBA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0035269 protein O-linked glycosylation via mannose AnnotationPropagation P GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IBA
GO:1901475 pyruvate transmembrane transport AnnotationPropagation P GO:0050833 pyruvate transmembrane transporter activity IBA
GO:0006366 transcription by RNA polymerase II AnnotationPropagation P GO:0016251 RNA polymerase II general transcription initiation factor activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042776 proton motive force-driven mitochondrial ATP synthesis IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0007007 inner mitochondrial membrane organization IBA
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0005829 cytosol AnnotationPropagation C GO:0034498 early endosome to Golgi transport IBA
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0035445 borate transmembrane transport AnnotationPropagation P GO:0080139 borate efflux transmembrane transporter activity IBA
GO:0006338 chromatin remodeling AnnotationPropagation P GO:0042799 histone H4K20 methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:1990822 basic amino acid transmembrane transport AnnotationPropagation P GO:0015174 basic amino acid transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity AnnotationPropagation P GO:0051500 D-tyrosyl-tRNA(Tyr) deacylase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0000965 mitochondrial RNA 3'-end processing IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0015093 ferrous iron transmembrane transporter activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IBA
GO:0006278 RNA-templated DNA biosynthetic process AnnotationPropagation P GO:0003720 telomerase activity IBA
GO:0007010 cytoskeleton organization AnnotationPropagation P GO:0005200 structural constituent of cytoskeleton IBA

Table of contents

Report

Group: pombase - Dataset: pombase

SUMMARY

Header From Original Association File

Contents

MESSAGES

gorule-0000002

gorule-0000005

gorule-0000006

gorule-0000007

Messages

gorule-0000008

Messages

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

Messages

gorule-0000017

gorule-0000018

Messages

gorule-0000020

Messages

gorule-0000022

gorule-0000027

Messages

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

Messages

gorule-0000050

gorule-0000055

gorule-0000058

gorule-0000061

Messages

gorule-0000063

gorule-0000064

gorule-0000065

Messages

other

Predictions

Predictions (experimental)