GORULE violations assigned by ARUK-UCL

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000065 Annotations to term that are candidates for obsoletion should be produce a warning

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 20

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:101924 Slc12a2 located_in GO:0042995 PMID:11940530 IDA C solute carrier family 12, member 2 Nkcc1|mBSC2|sodium/potassium/chloride cotransporters|sy-ns protein NCBITaxon:10090 20200120 ARUK-UCL part_of(CL:0002605),part_of(UBERON:0000956) MGI:MGI:101924 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:2146030 Slc2a13 located_in GO:0031090 PMID:14749729 IDA C solute carrier family 2 (facilitated glucose transporter), member 13 A630029G22Rik protein NCBITaxon:10090 20200226 ARUK-UCL part_of(UBERON:0000955) MGI:MGI:2146030 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88106 Atp1a2 located_in GO:0042995 PMID:12458206 IDA C ATPase, Na+/K+ transporting, alpha 2 polypeptide Atpa-3 protein NCBITaxon:10090 20190917 ARUK-UCL part_of(UBERON:0000955) MGI:MGI:88106 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88106 Atp1a2 located_in GO:0042995 PMID:12805306 IDA C ATPase, Na+/K+ transporting, alpha 2 polypeptide Atpa-3 protein NCBITaxon:10090 20190917 ARUK-UCL part_of(UBERON:0001876),part_of(UBERON:0002606)|part_of(UBERON:0004725),part_of(UBERON:0002606) MGI:MGI:88106 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RGD 2927 Itgb1 involved_in GO:0030030 PMID:20091784 IMP P integrin subunit beta 1 protein NCBITaxon:10116 20180521 ARUK-UCL part_of(GO:0071318),occurs_in(CL:0000129)|part_of(GO:0071415),occurs_in(CL:0000129) RGD:2927 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RGD 620458 Cx3cl1 located_in GO:0042995 PMID:11870871 IDA C C-X3-C motif chemokine ligand 1 protein NCBITaxon:10116 20180605 ARUK-UCL part_of(CL:0000127) RGD:620458 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RGD 621814 Slc2a13 located_in GO:0042995 PMID:19607714 IDA C solute carrier family 2 member 13 protein NCBITaxon:10116 20200225 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0000956) RGD:621814 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P05023 ATP1A1 located_in GO:0031090 PMID:19751721 IGI UniProtKB:P05026 C Sodium/potassium-transporting ATPase subunit alpha-1 ATP1A1 protein taxon:9606 20190917 ARUK-UCL part_of(CL:0000746) UniProtKB:P05023 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P05026 ATP1B1 located_in GO:0031090 PMID:19751721 IGI UniProtKB:P05023|UniProtKB:P13637|UniProtKB:P50993 C Sodium/potassium-transporting ATPase subunit beta-1 ATP1B1|ATP1B protein taxon:9606 20190917 ARUK-UCL part_of(CL:0000746) UniProtKB:P05026 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P05556 ITGB1 involved_in GO:0030030 GO_REF:0000024 ISS UniProtKB:P49134 P Integrin beta-1 ITGB1|FNRB|MDF2|MSK12 protein taxon:9606 20180522 ARUK-UCL part_of(GO:0071318),occurs_in(CL:0000129)|part_of(GO:0071415),occurs_in(CL:0000129) UniProtKB:P05556 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P13637 ATP1A3 located_in GO:0031090 PMID:19751721 IGI UniProtKB:P05026 C Sodium/potassium-transporting ATPase subunit alpha-3 ATP1A3 protein taxon:9606 20190917 ARUK-UCL part_of(CL:0000746) UniProtKB:P13637 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P50993 ATP1A2 located_in GO:0031090 PMID:19751721 IGI UniProtKB:P05026 C Sodium/potassium-transporting ATPase subunit alpha-2 ATP1A2|KIAA0778 protein taxon:9606 20190917 ARUK-UCL part_of(CL:0000746) UniProtKB:P50993 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P50993 ATP1A2 located_in GO:0042995 GO_REF:0000024 ISS UniProtKB:Q6PIE5 C Sodium/potassium-transporting ATPase subunit alpha-2 ATP1A2|KIAA0778 protein taxon:9606 20190917 ARUK-UCL part_of(UBERON:0000955) UniProtKB:P50993 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P50993 ATP1A2 located_in GO:0042995 GO_REF:0000024 ISS UniProtKB:Q6PIE5 C Sodium/potassium-transporting ATPase subunit alpha-2 ATP1A2|KIAA0778 protein taxon:9606 20190917 ARUK-UCL part_of(UBERON:0001876),part_of(UBERON:0002606)|part_of(UBERON:0004725),part_of(UBERON:0002606) UniProtKB:P50993 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P55011 SLC12A2 located_in GO:0042995 GO_REF:0000024 ISS UniProtKB:P55012 C Solute carrier family 12 member 2 SLC12A2|NKCC1 protein taxon:9606 20200120 ARUK-UCL part_of(CL:0002605),part_of(UBERON:0000956) UniProtKB:P55011 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P78423 CX3CL1 located_in GO:0042995 GO_REF:0000024 ISS UniProtKB:O55145 C Fractalkine CX3CL1|FKN|NTT|SCYD1|A-152E5.2 protein taxon:9606 20180605 ARUK-UCL part_of(CL:0000127) UniProtKB:P78423 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q93084 ATP2A3 located_in GO:0031090 PMID:15028735 IDA C Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ATP2A3 protein taxon:9606 20191001 ARUK-UCL UniProtKB:Q93084 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96QE2 SLC2A13 located_in GO:0031090 GO_REF:0000024 ISS UniProtKB:Q3UHK1 C Proton myo-inositol cotransporter SLC2A13 protein taxon:9606 20200226 ARUK-UCL part_of(UBERON:0000955) UniProtKB:Q96QE2 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96QE2 SLC2A13 located_in GO:0042995 PMID:19607714 IDA C Proton myo-inositol cotransporter SLC2A13 protein taxon:9606 20200225 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0002421)|part_of(UBERON:0000955),part_of(UBERON:0010225)|part_of(UBERON:0000955),part_of(UBERON:0000956) UniProtKB:Q96QE2 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9H244 P2RY12 involved_in GO:0030030 GO_REF:0000024 ISS UniProtKB:Q9EPX4 P P2Y purinoceptor 12 P2RY12|HORK3 protein taxon:9606 20180522 ARUK-UCL part_of(GO:0071318),occurs_in(CL:0000129)|part_of(GO:0071415),occurs_in(CL:0000129) UniProtKB:Q9H244 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 43

messages

• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:106040 Cyp51 involved_in GO:0042177 PMID:20876579 IMP P cytochrome P450, family 51 protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:Q9JHR7) MGI:MGI:106040 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:106040 Cyp51 involved_in GO:0050709 PMID:20876579 IMP P cytochrome P450, family 51 protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:Q9JHR7),part_of(GO:0042177) MGI:MGI:106040 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:88057 Apoe located_in GO:0005615 PMID:20005821 IDA C apolipoprotein E Apoe protein NCBITaxon:10090 20170601 ARUK-UCL part_of(UBERON:0000955) MGI:MGI:88057 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:88057 Apoe located_in GO:0005615 PMID:23640054 IDA C apolipoprotein E Apoe protein NCBITaxon:10090 20170710 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0000913) MGI:MGI:88057 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96113 Hmgb1 located_in GO:0005615 PMID:28096568 IDA C high mobility group box 1 DEF|HMG-1|Hmg1|SBP-1|amphoterin|p30 protein NCBITaxon:10090 20181012 ARUK-UCL produced_by(CL:0000129),part_of(GO:0071222) MGI:MGI:96113 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96159 Hmgcr involved_in GO:0042177 PMID:20876579 IMP P 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 3-hydroxy-3-methylglutaryl-CoA reductase|HMG-CoAR|Red protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:Q9JHR7) MGI:MGI:96159 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96159 Hmgcr involved_in GO:0050709 PMID:20876579 IMP P 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 3-hydroxy-3-methylglutaryl-CoA reductase|HMG-CoAR|Red protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:Q9JHR7),part_of(GO:0042177) MGI:MGI:96159 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96412 Ide involved_in GO:0030163 PMID:20876579 IMP P insulin degrading enzyme 1300012G03Rik|4833415K22Rik protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:0097242),has_input(UniProtKB:P12023-PRO_0000000119) MGI:MGI:96412 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96412 Ide involved_in GO:0097242 PMID:20876579 IMP P insulin degrading enzyme 1300012G03Rik|4833415K22Rik protein NCBITaxon:10090 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),has_input(UniProtKB:P12023-PRO_0000000119) MGI:MGI:96412 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96765 Ldlr involved_in GO:0097242 PMID:20005821 IGI UniProtKB:P05067,UniProtKB:P49768 P low density lipoprotein receptor protein NCBITaxon:10090 20181108 ARUK-UCL has_target_start_location(UBERON:0000913),has_target_start_location(GO:0005615) MGI:MGI:96765 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 2861 Ide involved_in GO:0097242 PMID:10684867 IMP P insulin degrading enzyme protein NCBITaxon:10116 20181108 ARUK-UCL occurs_in(UBERON:0001950),occurs_in(GO:0005615) RGD:2861 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 2861 Ide located_in GO:0005615 PMID:10684867 IDA C insulin degrading enzyme protein NCBITaxon:10116 20181008 ARUK-UCL adjacent_to(CL:0000129) RGD:2861 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O76096 CST7 located_in GO:0005615 PMID:12423348 IDA C Cystatin-F CST7 protein taxon:9606 20190225 ARUK-UCL UniProtKB:O76096 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O76096 CST7 located_in GO:0005615 PMID:15212960 IDA C Cystatin-F CST7 protein taxon:9606 20190226 ARUK-UCL UniProtKB:O76096 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P01034 CST3 located_in GO:0005615 PMID:28904096 IDA C Cystatin-C CST3 protein taxon:9606 20190214 ARUK-UCL UniProtKB:P01034 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P01130 LDLR involved_in GO:0097242 GO_REF:0000024 ISS UniProtKB:P35951 P Low-density lipoprotein receptor LDLR protein taxon:9606 20181108 ARUK-UCL has_target_start_location(UBERON:0000913),has_target_start_location(GO:0005615) UniProtKB:P01130 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02649 APOE located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P08226 C Apolipoprotein E APOE protein taxon:9606 20170601 ARUK-UCL part_of(UBERON:0000955) UniProtKB:P02649 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02649 APOE located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P08226 C Apolipoprotein E APOE protein taxon:9606 20170710 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0000913) UniProtKB:P02649 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P04035 HMGCR involved_in GO:0042177 GO_REF:0000024 ISS UniProtKB:Q01237 P 3-hydroxy-3-methylglutaryl-coenzyme A reductase HMGCR protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:P14735) UniProtKB:P04035 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P04035 HMGCR involved_in GO:0050709 GO_REF:0000024 ISS UniProtKB:Q01237 P 3-hydroxy-3-methylglutaryl-coenzyme A reductase HMGCR protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:P14735),part_of(GO:0042177) UniProtKB:P04035 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:20164328 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170208 ARUK-UCL existence_overlaps(UBERON:0018241),part_of(UBERON:0002421) UniProtKB:P05067-PRO_0000000089 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:23640054 IMP C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170710 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0000913),part_of(GO:0106003) UniProtKB:P05067-PRO_0000000092 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:23640054 IMP C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170710 ARUK-UCL part_of(UBERON:0000955),part_of(UBERON:0000913),part_of(GO:0106003) UniProtKB:P05067-PRO_0000000093 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:23921129 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170622 ARUK-UCL part_of(UBERON:0001954) UniProtKB:P05067 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:24827165 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20180702 ARUK-UCL part_of(UBERON:0001969)|part_of(UBERON:0001359) UniProtKB:P05067-PRO_0000000092 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:26005850 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170518 ARUK-UCL part_of(UBERON:0000913)|part_of(UBERON:0001969) UniProtKB:P05067-PRO_0000000092 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05067 APP located_in GO:0005615 PMID:26005850 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170518 ARUK-UCL part_of(UBERON:0000913)|part_of(UBERON:0001969) UniProtKB:P05067-PRO_0000000093 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P08473 MME involved_in GO:0097242 PMID:15100223 IDA P Neprilysin MME|EPN protein taxon:9606 20210428 ARUK-UCL has_input(UniProtKB:P05067-PRO_0000000093),occurs_in(GO:0005615),occurs_in(CL:0000540)|has_input(UniProtKB:P05067-PRO_0000000092),occurs_in(GO:0005615),occurs_in(CL:0000540) UniProtKB:P08473 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P08473 MME involved_in GO:0097242 PMID:15100223 IDA P Neprilysin MME|EPN protein taxon:9606 20210428 ARUK-UCL has_input(UniProtKB:P05067-PRO_0000000093),occurs_in(GO:0005615),occurs_in(CL:0000540)|has_input(UniProtKB:P05067-PRO_0000000092),occurs_in(GO:0005615),occurs_in(CL:0000540) UniProtKB:P08473 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P09429 HMGB1 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P63158 C High mobility group protein B1 HMGB1|HMG1 protein taxon:9606 20181012 ARUK-UCL produced_by(CL:0000129),part_of(GO:0071222) UniProtKB:P09429 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14735 IDE involved_in GO:0030163 GO_REF:0000024 ISS UniProtKB:Q9JHR7 P Insulin-degrading enzyme IDE protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:0097242),has_input(UniProtKB:P05067-PRO_0000000093) UniProtKB:P14735 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14735 IDE involved_in GO:0097242 GO_REF:0000024 ISS UniProtKB:P35559 P Insulin-degrading enzyme IDE protein taxon:9606 20181108 ARUK-UCL occurs_in(UBERON:0001950),occurs_in(GO:0005615) UniProtKB:P14735 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14735 IDE involved_in GO:0097242 GO_REF:0000024 ISS UniProtKB:Q9JHR7 P Insulin-degrading enzyme IDE protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),has_input(UniProtKB:P05067-PRO_0000000092) UniProtKB:P14735 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14735 IDE located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P35559 C Insulin-degrading enzyme IDE protein taxon:9606 20181008 ARUK-UCL adjacent_to(CL:0000129) UniProtKB:P14735 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14735 IDE located_in GO:0005615 PMID:10684867 TAS C Insulin-degrading enzyme IDE protein taxon:9606 20181002 ARUK-UCL adjacent_to(CL:0000129)|part_of(UBERON:0001359) UniProtKB:P14735 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P28799 GRN located_in GO:0005615 PMID:20479936 IDA C Progranulin GRN protein taxon:9606 20181120 ARUK-UCL UniProtKB:P28799 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P58400 NRXN1 enables GO:0097109 PMID:14522992 NAS F Neurexin-1-beta NRXN1 protein taxon:9606 20170814 ARUK-UCL occurs_in(GO:0045202),occurs_in(GO:0005615) UniProtKB:P58400 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q16850 CYP51A1 involved_in GO:0042177 GO_REF:0000024 ISS UniProtKB:Q8K0C4 P Lanosterol 14-alpha demethylase CYP51A1|CYP51 protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:P14735) UniProtKB:Q16850 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q16850 CYP51A1 involved_in GO:0050709 GO_REF:0000024 ISS UniProtKB:Q8K0C4 P Lanosterol 14-alpha demethylase CYP51A1|CYP51 protein taxon:9606 20210428 ARUK-UCL occurs_in(CL:0000129),occurs_in(GO:0005615),part_of(GO:1900222),has_input(UniProtKB:P14735),part_of(GO:0042177) UniProtKB:Q16850 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q495T6 MMEL1 located_in GO:0005615 PMID:18539150 IDA C Membrane metallo-endopeptidase-like 1 MMEL1|MELL1|MMEL2|NEP2 protein taxon:9606 20181113 ARUK-UCL UniProtKB:Q495T6 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q8N2Q7 NLGN1 enables GO:0042043 PMID:14522992 NAS F Neuroligin-1 NLGN1|KIAA1070 protein taxon:9606 20170814 ARUK-UCL occurs_in(GO:0045202),occurs_in(GO:0005615) UniProtKB:Q8N2Q7 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`ComplexPortal CPX-1134 abeta-42-oligomer_human located_in GO:0005615 PMID:15537891 IDA C Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|amyloid-beta-42 complex|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170711 ARUK-UCL adjacent_to(CL:0000540),part_of(UBERON:0000956)|adjacent_to(CL:0000540),part_of(UBERON:0002037)|adjacent_to(CL:0000540),part_of(UBERON:0001359) `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RNAcentral URS000075DD0E_9606 hsa-miR-384 located_in GO:0005615 PMID:24827165 IDA C Homo sapiens (human) hsa-miR-384 miRNA taxon:9606 20180702 ARUK-UCL part_of(UBERON:0001969)|part_of(UBERON:0001359) `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 13

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1196458 Scarb2 enables GO:0042803 PMID:29199275 IPI UniProtKB:O35114 F scavenger receptor class B, member 2 9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2 protein NCBITaxon:10090 20181031 ARUK-UCL MGI:MGI:1196458 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:894311 Pirb enables GO:0042803 PMID:24052308 IPI UniProtKB:P97484 F paired Ig-like receptor B Gp91|Lilrb3 protein NCBITaxon:10090 20230314 ARUK-UCL causally_upstream_of(GO:0001540) MGI:MGI:894311 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:97275 Myod1 enables GO:0042803 PMID:10652346 IPI UniProtKB:P10085 F myogenic differentiation 1 MYF3|MyoD|Myod-1|bHLHc1 protein NCBITaxon:10090 20230314 ARUK-UCL MGI:MGI:97275 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:18568035 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170213 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:22179788 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067-PRO_0000000093) UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:18602473 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067) UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P10636 MAPT involved_in GO:0051260 PMID:26704708 IPI UniProtKB:P10636-8 P Microtubule-associated protein tau MAPT|MAPTL|MTBT1|TAU protein taxon:9606 20230314 ARUK-UCL happens_during(UBERON:0000112),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611)|happens_during(UBERON:0018241),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611) UniProtKB:P10636-8 `

gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q7Z5W3 BCDIN3D involved_in GO:0001510 PMID:33664453 IDA P RNA 5'-monophosphate methyltransferase BCDIN3D protein taxon:9606 20220322 ARUK-UCL has_output(RNAcentral:URS00002F8148_9606),has_output(RNAcentral:URS00003B7674_9606),part_of(GO:0031054) UniProtKB:Q7Z5W3 `