GORULE violations assigned by AgBase

gorule-0000002 No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000022 Check for, and filter, annotations made to retracted publications

gorule-0000027 Each identifier in GAF is valid

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

total: 2

messages

ERROR - Violates GO Rule:GORULE:0000002: No 'NOT' annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P63026 VAMP2 NOT|enables GO:0005515 PMID:20702699 IPI UniProtKB:F1N348 F Vesicle-associated membrane protein 2 VAMP2|SYB2 protein taxon:9913 20141106 AgBase UniProtKB:P63026 `
ERROR - Violates GO Rule:GORULE:0000002: No 'NOT' annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P63026 VAMP2 NOT|enables GO:0005515 PMID:20702699 IPI UniProtKB:P20488 F Vesicle-associated membrane protein 2 VAMP2|SYB2 protein taxon:9913 20141106 AgBase UniProtKB:P63026 `

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

total: 5

messages

WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:98725 Tgfb1 enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta-1 proprotein protein taxon:10090 20141202 AgBase `
WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P18341 TGFB1 enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta-1 proprotein TGFB1 protein taxon:9913 20141202 AgBase UniProtKB:P18341 `
WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P68399 CSNK2A1 enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P68400 F Casein kinase II subunit alpha CSNK2A1|CK2A1 protein taxon:9913 20070615 AgBase UniProtKB:P68399 `
WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB Q5EA77 SNX17 enables GO:0005515 GO_REF:0000024 ISS UniProtKB:Q15036 F Sorting nexin-17 SNX17 protein taxon:9913 20070412 AgBase UniProtKB:Q5EA77 `
WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P54831 TGFB1 enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P01137 F Transforming growth factor beta-1 proprotein TGFB1 protein taxon:9615 20141202 AgBase UniProtKB:P54831 `

gorule-0000008

No annotations should be made to uninformative high level terms

total: 53

messages

WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:96157 Hmgb2 enables GO:0008134 PMID:23495099 IDA F High mobility group protein B2 protein taxon:10090 20150512 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1197010 Sumo1 enables GO:0008134 PMID:15023536 IMP F Small ubiquitin-related modifier 1 protein taxon:10090 20150116 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB A7WLH8 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1 protein taxon:9823 20150116 AgBase UniProtKB:A7WLH8 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1RJ01 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2 protein taxon:9823 20150512 AgBase UniProtKB:F1RJ01 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1RJ01 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2 protein taxon:9823 20150512 AgBase UniProtKB:F1RJ01 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1RJ01 HMGB2 involved_in GO:0043388 GO_REF:0000024 ISS UniProtKB:P30681 P High mobility group protein B2 HMGB2 protein taxon:9823 20150508 AgBase UniProtKB:F1RJ01 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB I3L8Q3 CSF2 involved_in GO:0072651 PMID:16792532 IMP P Granulocyte-macrophage colony-stimulating factor CSF2 protein taxon:9823 20150530 AgBase occurs_in(CL:1000274) UniProtKB:I3L8Q3 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q4PLW0 PLIN2 located_in GO:0005622 PMID:21420243 IDA C Perilipin-2 PLIN2|ADFP|ADRP protein taxon:9823 20150513 AgBase part_of(CL:0000187),part_of(UBERON:0001381) UniProtKB:Q4PLW0 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB G2XKQ0 SUMO1P1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 5 SUMO1P1|SUMO5|UBL2|UBL6 protein taxon:9606 20150116 AgBase UniProtKB:G2XKQ0 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P05019 IGF1 involved_in GO:2000679 PMID:15059951 IDA P Insulin-like growth factor 1 IGF1|IBP1|IGF-1 protein taxon:9606 20150710 AgBase has_input(UniProtKB:O97894)|has_input(UniProtKB:I3LUZ9) UniProtKB:P05019 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P26583 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase UniProtKB:P26583 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P26583 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9606 20150512 AgBase UniProtKB:P26583 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P63165 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1|SMT3C|SMT3H3|UBL1|OK/SW-cl.43 protein taxon:9606 20150116 AgBase UniProtKB:P63165 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1MHQ4 FABP4 involved_in GO:0001816 GO_REF:0000024 ISS UniProtKB:P04117 P Fatty acid-binding protein, adipocyte FABP4 protein taxon:9913 20160205 AgBase UniProtKB:F1MHQ4 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB G3MZL6 LOC101906855 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 LOC101906855 protein taxon:9913 20150116 AgBase UniProtKB:G3MZL6 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P11052 CSF2 involved_in GO:0072651 GO_REF:0000024 ISS UniProtKB:Q29118 P Granulocyte-macrophage colony-stimulating factor CSF2 protein taxon:9913 20150530 AgBase UniProtKB:P11052 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P18203 FKBP1A involved_in GO:0032092 PMID:11341768 ISA UniProtKB:P62942 P Peptidyl-prolyl cis-trans isomerase FKBP1A FKBP1A|FKBP1 protein taxon:9913 20090205 AgBase UniProtKB:P18203 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P40673 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase UniProtKB:P40673 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P40673 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2|HMG2 protein taxon:9913 20150512 AgBase UniProtKB:P40673 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P46282 IL12B involved_in GO:0032609 PMID:12133628 IDA P Interleukin-12 subunit beta IL12B protein taxon:9913 20150131 AgBase UniProtKB:P46282 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P48035 FABP4 involved_in GO:0001816 GO_REF:0000024 ISS UniProtKB:P04117 P Fatty acid-binding protein, adipocyte FABP4 protein taxon:9913 20160205 AgBase UniProtKB:P48035 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P54349 IL12A involved_in GO:0032609 PMID:12133628 IDA P Interleukin-12 subunit alpha IL12A protein taxon:9913 20150131 AgBase UniProtKB:P54349 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P81287 ANXA5 located_in GO:0005622 GO_REF:0000024 ISS UniProtKB:P08758 C Annexin A5 ANXA5|ANX5 protein taxon:9913 20061003 AgBase UniProtKB:P81287 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q2HJ92 PRKRA located_in GO:0005622 GO_REF:0000024 ISS UniProtKB:Q9WTX2 C Interferon-inducible double-stranded RNA-dependent protein kinase activator A PRKRA protein taxon:9913 20070616 AgBase UniProtKB:Q2HJ92 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5E9D1 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1 protein taxon:9913 20150116 AgBase UniProtKB:Q5E9D1 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`Xenbase XB-GENE-5836974 fkbp1a.L acts_upstream_of_or_within GO:0032092 PMID:11341768 ISA UniProtKB:P62942 P FKBP prolyl isomerase 1A L homeolog fkbp 12|fkbp-12|fkbp1|pkc12|pkci2|ppiase|xfkbp1a protein taxon:8355 20090205 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`Xenbase XB-GENE-6254630 sumo1.L enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 L homeolog dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8355 20150116 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`Xenbase XB-GENE-978491 sumo1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8364 20150116 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`Xenbase XB-GENE-978496 sumo1.S enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F small ubiquitin like modifier 1 S homeolog dap1|gmp1|ofc10|pic1|senp2|smt3|smt3c|sumo-1|sumo1-a|sumo1-b|ubl1|xsumo-1|xsumo1 protein taxon:8355 20150116 AgBase `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1NPU8 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P30681 F High mobility group protein B2 HMGB2 protein taxon:9031 20150512 AgBase UniProtKB:F1NPU8 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1NPU8 HMGB2 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:Q3U566 F High mobility group protein B2 HMGB2 protein taxon:9031 20150512 AgBase UniProtKB:F1NPU8 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB F1P4G3 HIPK2 involved_in GO:0043388 GO_REF:0000024 ISS UniProtKB:Q9QZR5 P Homeodomain interacting protein kinase 2 HIPK2 protein taxon:9031 20061117 AgBase UniProtKB:F1P4G3 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O42410 IKZF1 involved_in GO:0002377 PMID:20602434 TAS P DNA-binding protein Ikaros IKZF1|IK|IKAROS|ZNFN1A1 protein taxon:9031 20120130 AgBase UniProtKB:O42410 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O42410 IKZF1 involved_in GO:0016049 PMID:20602434 TAS P DNA-binding protein Ikaros IKZF1|IK|IKAROS|ZNFN1A1 protein taxon:9031 20120130 AgBase UniProtKB:O42410 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P11029 ACAC involved_in GO:0006810 PMID:20816383 TAS P Acetyl-CoA carboxylase ACAC protein taxon:9031 20130306 AgBase UniProtKB:P11029 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P30371 TGFB2 involved_in GO:0008219 PMID:10401723 ISA UniProtKB:P61812 P Transforming growth factor beta-2 proprotein TGFB2 protein taxon:9031 20091203 AgBase UniProtKB:P30371 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P63283 UBE2I enables GO:0008134 PMID:23382206 IPI UniProtKB:P48434 F SUMO-conjugating enzyme UBC9 UBE2I|UBC9|UBCE9 protein taxon:9031 20140514 AgBase UniProtKB:P63283 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q00649 HSPB1 located_in GO:0005622 PMID:15135047 ISS UniProtKB:P14602 C Heat shock protein beta-1 HSPB1 protein taxon:9031 20140201 AgBase UniProtKB:Q00649 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q00944 PTK2 involved_in GO:0032092 PMID:15340073 IMP P Focal adhesion kinase 1 PTK2|FAK|FAK1 protein taxon:9031 20160113 AgBase UniProtKB:Q00944 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q05423 FABP7 enables GO:0008134 PMID:10090146 TAS F Fatty acid-binding protein, brain FABP7 protein taxon:9031 20100429 AgBase UniProtKB:Q05423 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q06900 ChALK5 involved_in GO:0043393 PMID:10885742 ISA UniProtKB:Q64729 P TGF-beta receptor type-1 ChALK5|TGFBR1 protein taxon:9031 20130311 AgBase UniProtKB:Q06900 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q679P3 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:O93288 F PDZ and LIM domain protein 7 PDLIM7|LMP|RCJMB04_14g20 protein taxon:9031 20150408 AgBase UniProtKB:Q679P3 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q679P3 PDLIM7 enables GO:0008134 PMID:15302601 IPI UniProtKB:Q9PWE8 F PDZ and LIM domain protein 7 PDLIM7|LMP|RCJMB04_14g20 protein taxon:9031 20150408 AgBase UniProtKB:Q679P3 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8QGH2 SUMO1 enables GO:0008134 GO_REF:0000024 ISS UniProtKB:P63166 F Small ubiquitin-related modifier 1 SUMO1|RCJMB04_2j18 protein taxon:9031 20150116 AgBase UniProtKB:Q8QGH2 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8QGW7 LITAF involved_in GO:0001816 PMID:18539728 TAS P Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog LITAF|SIMPLE protein taxon:9031 20090716 AgBase UniProtKB:Q8QGW7 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q90998 TGFBR3 involved_in GO:0016049 PMID:8167376 ISA UniProtKB:P26342 P ZP domain-containing protein TGFBR3 protein taxon:9031 20091203 AgBase UniProtKB:Q90998 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q90998 TGFBR3 involved_in GO:0043393 PMID:8167376 ISA UniProtKB:P26342 P ZP domain-containing protein TGFBR3 protein taxon:9031 20091203 AgBase UniProtKB:Q90998 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q91035 SHH involved_in GO:0090269 PMID:10524628 IMP P Sonic hedgehog protein SHH protein taxon:9031 20141202 AgBase UniProtKB:Q91035 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q91035 SHH involved_in GO:0090269 PMID:9187149 IDA P Sonic hedgehog protein SHH protein taxon:9031 20150522 AgBase UniProtKB:Q91035 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9PRS8 Q9PRS8 enables GO:0043167 PMID:15263013 TAS F Ovocleidin-17 protein taxon:9031 20080730 AgBase UniProtKB:Q9PRS8 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9YGL6 PALM located_in GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3 `

gorule-0000013

Taxon-appropriate annotation check

total: 2

messages

ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB Q02399 CDK5 enables GO:0050321 GO_REF:0000024 ISS UniProtKB:Q03114 F Cyclin-dependent kinase 5 CDK5|CDKN5|PSSALRE protein taxon:9913 20070126 AgBase UniProtKB:Q02399 `
WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P08998 GH involved_in GO:0035846 PMID:24744268 IDA P Somatotropin GH protein taxon:9031 20150219 AgBase UniProtKB:P08998 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

total: 21

messages

ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O42130 TOP2A involved_in GO:0006266 GO_REF:0000024 ISS UniProtKB:P11388 P DNA topoisomerase 2-alpha TOP2A protein taxon:9031 20090312 AgBase UniProtKB:O42130 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P02789 P02789 involved_in GO:0006880 PMID:18459044 TAS P Ovotransferrin protein taxon:9031 20120913 AgBase UniProtKB:P02789 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P08110 HSP90B1 involved_in GO:0006880 PMID:18459044 TAS P Endoplasmin HSP90B1|HSPC4|TRA1 protein taxon:9031 20120913 AgBase UniProtKB:P08110 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P02789 P02789 involved_in GO:0006881 PMID:7490743 NAS P Ovotransferrin protein taxon:9031 20110617 AgBase UniProtKB:P02789 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P38529 HSF1 enables GO:0001046 PMID:9716376 IDA F Heat shock factor protein 1 HSF1 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070) UniProtKB:P38529 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P38530 HSF2 enables GO:0001046 PMID:9716376 IDA F Heat shock factor protein 2 HSF2 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070) UniProtKB:P38530 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P38531 HSF3 enables GO:0001046 PMID:9716376 IDA F Heat shock factor protein 3 HSF3 protein taxon:9031 20151228 AgBase happens_during(GO:0010243),happens_during(GO:0014070) UniProtKB:P38531 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P51151 RAB9A involved_in GO:0052403 PMID:18787122 IMP P Ras-related protein Rab-9A RAB9A|RAB9 protein taxon:9606 20150506 AgBase has_input(UniProtKB:Q56061) UniProtKB:P51151 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q2AB81 TAS2R7 involved_in GO:0071407 PMID:25180257 IDA P Taste receptor type 2 TAS2R7 protein taxon:9031 20160318 AgBase UniProtKB:Q2AB81 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P38529 HSF1 involved_in GO:0010628 PMID:11387221 IMP P Heat shock factor protein 1 HSF1 protein taxon:9031 20151218 AgBase part_of(GO:0034605)|part_of(GO:1903936)|part_of(GO:0071417)|has_input(UniProtKB:P11501) UniProtKB:P38529 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P38531 HSF3 involved_in GO:0010628 PMID:11387221 IMP P Heat shock factor protein 3 HSF3 protein taxon:9031 20151218 AgBase part_of(GO:0034605)|part_of(GO:1903936)|part_of(GO:0071417)|has_input(UniProtKB:P11501) UniProtKB:P38531 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB B0JYP2 SLC18A2 enables GO:0097159 PMID:1279122 IDA F Major facilitator superfamily (MFS) profile domain-containing protein SLC18A2 protein taxon:9913 20150131 AgBase occurs_in(GO:0042583) UniProtKB:B0JYP2 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q27963 SLC18A2 enables GO:0097159 PMID:1279122 IDA F Synaptic vesicular amine transporter SLC18A2|VMAT2 protein taxon:9913 20150131 AgBase occurs_in(GO:0042583) UniProtKB:Q27963 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB B8YLW8 D1A enables GO:0097159 PMID:8848138 IDA F G-protein coupled receptors family 1 profile domain-containing protein D1A|DRD1 protein taxon:9031 20150903 AgBase has_participant(CHEBI:73297),occurs_in(UBERON:0001890),occurs_in(UBERON:0002421),occurs_in(UBERON:0005383) UniProtKB:B8YLW8 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P24463 CYP3A12 involved_in GO:1901615 PMID:10620362 IDA P Cytochrome P450 3A12 CYP3A12 protein taxon:9615 20150902 AgBase has_input(CHEBI:17347)|has_input(CHEBI:16422) UniProtKB:P24463 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB I3LVS7 RHOA involved_in GO:2001056 GO_REF:0000024 ISS UniProtKB:P61589 P Transforming protein RhoA RHOA protein taxon:9823 20150916 AgBase UniProtKB:I3LVS7 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q29031 MYC involved_in GO:2001056 GO_REF:0000024 ISS UniProtKB:P01108 P Myc proto-oncogene protein MYC protein taxon:9823 20070814 AgBase UniProtKB:Q29031 `
ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q2HJ27 MYC involved_in GO:2001056 GO_REF:0000024 ISS UniProtKB:P01108 P Myc proto-oncogene protein MYC protein taxon:9913 20070814 AgBase UniProtKB:Q2HJ27 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q3ZBH9 MCM7 involved_in GO:0006268 GO_REF:0000024 ISS UniProtKB:Q61881 P DNA replication licensing factor MCM7 MCM7 protein taxon:9913 20080201 AgBase UniProtKB:Q3ZBH9 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9P1Z2 CALCOCO1 enables GO:0030374 PMID:16344550 IDA F Calcium-binding and coiled-coil domain-containing protein 1 CALCOCO1|KIAA1536|PP13275|UNQ2436/PRO4996 protein taxon:9606 20100104 AgBase UniProtKB:Q9P1Z2 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q5ZID1 MED17 enables GO:0030374 GO_REF:0000024 ISS UniProtKB:Q9NVC6 F Mediator of RNA polymerase II transcription subunit 17 MED17|CRSP6|RCJMB04_27o3 protein taxon:9031 20181211 AgBase UniProtKB:Q5ZID1 `

gorule-0000022

Check for, and filter, annotations made to retracted publications

total: 2

messages

ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB Q07496 EPHA4 involved_in GO:0001756 PMID:12617855 NAS P Ephrin type-A receptor 4 EPHA4|CEK8 protein taxon:9031 20130315 AgBase UniProtKB:Q07496 `
ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB Q07496 EPHA4 involved_in GO:0035282 PMID:12617855 NAS P Ephrin type-A receptor 4 EPHA4|CEK8 protein taxon:9031 20130315 AgBase UniProtKB:Q07496 `

gorule-0000027

Each identifier in GAF is valid

total: 49

messages

WARNING - Invalid identifier:GORULE:0000027: 95691 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:95691 Mstn involved_in GO:1902723 GO_REF:0000024 ISS UniProtKB:O42221 P Growth/differentiation factor 8 protein taxon:10090 20141216 AgBase `
WARNING - Invalid identifier:GORULE:0000027: 95691 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:95691 Mstn involved_in GO:1902725 GO_REF:0000024 ISS UniProtKB:O42221 P Growth/differentiation factor 8 protein taxon:10090 20141216 AgBase `
WARNING - Invalid identifier:GORULE:0000027: 95691 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:95691 Mstn involved_in GO:2000818 GO_REF:0000024 ISS UniProtKB:O42221 P Growth/differentiation factor 8 protein taxon:10090 20141216 AgBase `
WARNING - Invalid identifier:GORULE:0000027: 11468204 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 11468204 Hmgb1l2 enables GO:0000400 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q9YH06 F high mobility group box 1 like 2 gene taxon:10116 20150514 AgBase UniProtKB:D3ZXR5 `
WARNING - Invalid identifier:GORULE:0000027: 11468204 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 11468204 Hmgb1l2 enables GO:0000405 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q9YH06 F high mobility group box 1 like 2 gene taxon:10116 20150514 AgBase UniProtKB:D3ZXR5 `
WARNING - Invalid identifier:GORULE:0000027: 11468204 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 11468204 Hmgb1l2 enables GO:0008301 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q9YH06 F high mobility group box 1 like 2 gene taxon:10116 20150514 AgBase UniProtKB:D3ZXR5 `
WARNING - Invalid identifier:GORULE:0000027: 11468204 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 11468204 Hmgb1l2 involved_in GO:0032392 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q9YH06 P high mobility group box 1 like 2 gene taxon:10116 20150514 AgBase UniProtKB:D3ZXR5 `
WARNING - Invalid identifier:GORULE:0000027: 11468204 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 11468204 Hmgb1l2 enables GO:0097100 GO_REF:0000024|RGD:1600115 ISS UniProtKB:Q9YH06 F high mobility group box 1 like 2 gene taxon:10116 20150514 AgBase UniProtKB:D3ZXR5 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-040513-5 asic4a enables GO:0005248 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:A0A060DAJ9 F acid-sensing (proton-gated) ion channel family member 4a accn4a|zASIC4.1 protein_coding_gene taxon:7955 20150108 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-040513-5 asic4a located_in GO:0045177 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:A0A060DAJ9 C acid-sensing (proton-gated) ion channel family member 4a accn4a|zASIC4.1 protein_coding_gene taxon:7955 20150108 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-040426-847 hdac3 enables GO:0003714 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P56520 F histone deacetylase 3 zgc:55927 protein_coding_gene taxon:7955 20150421 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT34 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT35 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q8UWM6 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT34 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT35 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-110405-1 hsp70.2 located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q8UWM6 C heat shock cognate 70-kd protein, tandem duplicate 2 si:ch73-46h18.6|si:dkeyp-69e1.1|zgc:174006 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-080204-3 vip involved_in GO:0048255 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P45644-PRO_0000011484 P vasoactive intestinal peptide PHI|zgc:171463 protein_coding_gene taxon:7955 20141216 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-080204-3 vip involved_in GO:0070459 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P45644-PRO_0000011484 P vasoactive intestinal peptide PHI|zgc:171463 protein_coding_gene taxon:7955 20141216 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-080225-22 vipb involved_in GO:0048255 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P45644-PRO_0000011484 P vasoactive intestinal peptide b im:7156614|VIP2 protein_coding_gene taxon:7955 20141216 AgBase UniProtKB:B0LF71 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-080225-22 vipb involved_in GO:0070459 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P45644-PRO_0000011484 P vasoactive intestinal peptide b im:7156614|VIP2 protein_coding_gene taxon:7955 20141216 AgBase UniProtKB:B0LF71 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-040426-1143 atp6v1aa located_in GO:0016324 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:A0A060XSR8 C ATPase H+ transporting V1 subunit Aa atp6v1al|HA|zgc:63516 protein_coding_gene taxon:7955 20150311 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-060825-41 zgc:153713 involved_in GO:0044319 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:F1CG58 P zgc:153713 protein_coding_gene taxon:7955 20141211 AgBase UniProtKB:Q0P3X9 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-060825-41 zgc:153713 involved_in GO:0044319 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:G1MTS2 P zgc:153713 protein_coding_gene taxon:7955 20141211 AgBase UniProtKB:Q0P3X9 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-060825-41 zgc:153713 involved_in GO:1902766 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:F1CG58 P zgc:153713 protein_coding_gene taxon:7955 20141211 AgBase UniProtKB:Q0P3X9 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-060825-41 zgc:153713 involved_in GO:1902766 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:G1MTS2 P zgc:153713 protein_coding_gene taxon:7955 20141211 AgBase UniProtKB:Q0P3X9 `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT34 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT35 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005634 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q8UWM6 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT34 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q5KT35 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-050321-1 hsp70l located_in GO:0005737 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q8UWM6 C heat shock cognate 70-kd protein, like hsp70-4 protein_coding_gene taxon:7955 20150316 AgBase part_of(UBERON:0002107) `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0051673 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0045087 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0045087 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0050830 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0050830 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 involved_in GO:0051673 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 located_in GO:0005615 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 C si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-131121-80 si:dkey-108k21.15 located_in GO:0005615 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 C si:dkey-108k21.15 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-030131-9529 atp6v1ab located_in GO:0016324 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:A0A060XSR8 C ATPase H+ transporting V1 subunit Ab atp6v1a|im:7154831|wu:fj85a05 protein_coding_gene taxon:7955 20150311 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0045087 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0045087 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0050830 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0050830 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0051673 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 involved_in GO:0051673 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 P histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 located_in GO:0005615 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:C1BEH9 C histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `
WARNING - Invalid identifier:GORULE:0000027: ZDB-PUB-110105-1 does not match any id_syntax patterns for ZFIN in dbxrefs--`ZFIN ZDB-GENE-121214-150 hist1h2a1 located_in GO:0005615 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:P02264 C histone cluster 1 H2A family member1 si:ch211-113a14.16 protein_coding_gene taxon:7955 20150105 AgBase `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

total: 41

messages

WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1332235 Nrf1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 protein taxon:10090 20150422 AgBase `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`ZFIN ZDB-GENE-001221-1 nrf1 enables GO:0042803 ZFIN:ZDB-PUB-110105-1 ISS UniProtKB:Q90979 F nuclear respiratory factor 1 not really finished|nrf|nrl protein_coding_gene taxon:7955 20150422 AgBase UniProtKB:Q90X44-1 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 70491 Tgfb2 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P61812 F transforming growth factor, beta 2 gene taxon:10116 20141202 AgBase UniProtKB:Q07257-2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 70907 Actn1 enables GO:0042803 GO_REF:0000024|RGD:1600115 ISS UniProtKB:P05094-2 F actinin, alpha 1 gene taxon:10116 20150407 AgBase UniProtKB:Q6T487 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q16656 NRF1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 NRF1 protein taxon:9606 20150422 AgBase UniProtKB:Q16656 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q16656 NRF1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q90979 F Nuclear respiratory factor 1 NRF1 protein taxon:9606 20150422 AgBase UniProtKB:Q16656-4 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P00257 FDX1 enables GO:0042803 PMID:12069587 IDA F Adrenodoxin, mitochondrial FDX1|ADX protein taxon:9913 20060308 AgBase UniProtKB:P00257 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P02663 CSN1S2 enables GO:0042803 PMID:8186264 IDA F Alpha-S2-casein CSN1S2 protein taxon:9913 20150522 AgBase UniProtKB:P02663 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P02666 CSN2 enables GO:0042803 PMID:8186264 IDA F Beta-casein CSN2 protein taxon:9913 20150522 AgBase UniProtKB:P02666 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P18203 FKBP1A enables GO:0042803 PMID:11341768 ISA UniProtKB:P26883 F Peptidyl-prolyl cis-trans isomerase FKBP1A FKBP1A|FKBP1 protein taxon:9913 20140902 AgBase UniProtKB:P18203 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21214 TGFB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P61812 F Transforming growth factor beta-2 proprotein TGFB2 protein taxon:9913 20141202 AgBase UniProtKB:P21214 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P41541 USO1 involved_in GO:0051260 PMID:1512287 IDA P General vesicular transport factor p115 USO1|VDP protein taxon:9913 20150201 AgBase UniProtKB:P41541 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P42917 INHBB enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P09529 F Inhibin beta B chain INHBB protein taxon:9913 20070131 AgBase UniProtKB:P42917 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q28204 KCNMA1 involved_in GO:0051260 PMID:8973172 ISA UniProtKB:Q08460 P Calcium-activated potassium channel subunit alpha-1 KCNMA1|KCNMA protein taxon:9913 20090416 AgBase UniProtKB:Q28204 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q2KJ63 KLKB1 enables GO:0042803 PMID:8186264 IDA F Plasma kallikrein KLKB1 protein taxon:9913 20150522 AgBase UniProtKB:Q2KJ63 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q3B7N2 ACTN1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P05094-2 F Alpha-actinin-1 ACTN1 protein taxon:9913 20150407 AgBase UniProtKB:Q3B7N2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q76LV2 HSP90AA1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P07901 F Heat shock protein HSP 90-alpha HSP90AA1|HSP90A|HSPCA protein taxon:9913 20061006 AgBase UniProtKB:Q76LV2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB E1BSJ7 SKI enables GO:0042803 PMID:9927733 IMP F Ski oncogene SKI protein taxon:9031 20150414 AgBase UniProtKB:E1BSJ7 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB F1NNP2 TGFB2 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P61812 F Transforming growth factor beta TGFB2 protein taxon:9031 20141202 AgBase UniProtKB:F1NNP2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB F1P0N0 SKIL enables GO:0042803 PMID:9927733 IMP F c-SKI SMAD4-binding domain-containing protein SKIL protein taxon:9031 20150414 AgBase UniProtKB:F1P0N0 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB F1P3Y2 RHO enables GO:0042803 PMID:2605226 IDA F Rhodopsin RHO protein taxon:9031 20150604 AgBase UniProtKB:F1P3Y2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P02504 CRYAA involved_in GO:0051260 PMID:15135047 ISS UniProtKB:P02489 P Alpha-crystallin A chain CRYAA protein taxon:9031 20140201 AgBase UniProtKB:P02504 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05094 ACTN1 enables GO:0042803 PMID:8037676 IDA F Alpha-actinin-1 ACTN1 protein taxon:9031 20150407 AgBase UniProtKB:P05094 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05094 ACTN1 enables GO:0042803 PMID:8037676 IDA F Alpha-actinin-1 ACTN1 protein taxon:9031 20150407 AgBase UniProtKB:P05094-2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P12003 VCL enables GO:0042803 PMID:8037676 IDA F Vinculin VCL|VINC1 protein taxon:9031 20150407 AgBase UniProtKB:P12003 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P22328 RHO enables GO:0042803 PMID:2605226 IDA F Rhodopsin RHO protein taxon:9031 20150604 AgBase UniProtKB:P22328 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P22328 RHO involved_in GO:0070207 PMID:2605226 IDA P Rhodopsin RHO protein taxon:9031 20150604 AgBase UniProtKB:P22328 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P22329 P22329 enables GO:0042803 PMID:2605226 IDA F Red-sensitive opsin protein taxon:9031 20150604 AgBase UniProtKB:P22329 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P22329 P22329 involved_in GO:0070207 PMID:2605226 IDA P Red-sensitive opsin protein taxon:9031 20150604 AgBase UniProtKB:P22329 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P30371 TGFB2 enables GO:0042803 PMID:10401723 ISA UniProtKB:P61812 F Transforming growth factor beta-2 proprotein TGFB2 protein taxon:9031 20090424 AgBase UniProtKB:P30371 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P38529 HSF1 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 1 HSF1 protein taxon:9031 20151228 AgBase UniProtKB:P38529 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P38530 HSF2 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 2 HSF2 protein taxon:9031 20151228 AgBase UniProtKB:P38530 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P38531 HSF3 enables GO:0042803 PMID:21813737 IDA F Heat shock factor protein 3 HSF3 protein taxon:9031 20151224 AgBase UniProtKB:P38531 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P38531 HSF3 enables GO:0042803 PMID:9716376 IDA F Heat shock factor protein 3 HSF3 protein taxon:9031 20151228 AgBase UniProtKB:P38531 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P38531 HSF3 involved_in GO:0070207 PMID:21813737 IDA P Heat shock factor protein 3 HSF3 protein taxon:9031 20151224 AgBase UniProtKB:P38531 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P49140 SKI enables GO:0042803 PMID:9927733 IMP F Ski oncogene SKI protein taxon:9031 20150414 AgBase UniProtKB:P49140 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q90ZK6 ACVR1 enables GO:0042803 PMID:10885742 ISA UniProtKB:Q04771 F Activin receptor type-1 ACVR1 protein taxon:9031 20090113 AgBase UniProtKB:Q90ZK6 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q98953 S100A6 enables GO:0042803 PMID:8925441 IDA F Protein S100-A6 S100A6 protein taxon:9031 20150421 AgBase UniProtKB:Q98953 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9DG23 BVES involved_in GO:0051260 PMID:12815060 IDA P Blood vessel epicardial substance BVES|POP1|POPDC1 protein taxon:9031 20150402 AgBase UniProtKB:Q9DG23 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9IA05 FZD4 enables GO:0042803 PMID:11044615 ISO UniProtKB:Q9ULV1 F Frizzled-4 FZD4|FZ4 protein taxon:9031 20120809 AgBase UniProtKB:Q9IA05 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q28265 KCNMA1 involved_in GO:0051260 PMID:8973172 ISA UniProtKB:Q08460 P Calcium-activated potassium channel subunit alpha-1 KCNMA1|KCNMA protein taxon:9615 20090416 AgBase UniProtKB:Q28265 `

gorule-0000061

Allowed gene product to term relations (gp2term)

total: 1

messages

WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P67881 CYC colocalizes_with GO:0043293 PMID:12220121 IDA C Cytochrome c CYC protein taxon:9031 20110427 AgBase UniProtKB:P67881 `

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

total: 1

messages

WARNING - Violates GO Rule:GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)--`UniProtKB P31043 CD28 located_in GO:0005886 PMID:19013189 ISS C T-cell-specific surface glycoprotein CD28 homolog CD28 protein taxon:9031 20140515 AgBase UniProtKB:P31043 `

GORULE violations assigned by AgBase

Contents

MESSAGES

gorule-0000002

messages

gorule-0000005

messages

gorule-0000008

messages

gorule-0000013

messages

gorule-0000020

messages

gorule-0000022

messages

gorule-0000027

messages

gorule-0000046

messages

gorule-0000061

messages

gorule-0000063

messages