GORULE violations assigned by CAFA

Contents

gorule-0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000065 Annotations to term that are candidates for obsoletion should be produce a warning

MESSAGES

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:1891221 Crtap enables GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F cartilage associated protein 5730529N23Rik|CASP|Leprel3|P3h5 protein NCBITaxon:10090 20180925 CAFA has_input(UniProtKB:Q3V1T4),has_input(UniProtKB:P24369) MGI:MGI:1891221 `
• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:97750 Ppib enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F peptidylprolyl isomerase B Cphn-2|Cphn2|CyP-20b|cyclophilin B protein NCBITaxon:10090 20180925 CAFA has_input(UniProtKB:Q9CYD3),has_input(UniProtKB:Q3V1T4) MGI:MGI:97750 `
• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`RGD 620312 Ppib enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F peptidylprolyl isomerase B protein NCBITaxon:10116 20180925 CAFA RGD:620312 `
• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P23284 PPIB enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase B PPIB|CYPB protein taxon:9606 20180925 CAFA has_input(UniProtKB:O75718),has_input(UniProtKB:Q32P28) UniProtKB:P23284 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 48

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q04206 RELA enables GO:0000977 PMID:18045535 IMP F Transcription factor p65 RELA|NFKB3 protein taxon:9606 20200214 CAFA has_input(UniProtKB:P23396),part_of(GO:0051092) UniProtKB:Q04206 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:107656 Ifng located_in GO:0005615 PMID:24784232 IDA C interferon gamma IFN-gamma|Ifg protein NCBITaxon:10090 20170124 CAFA MGI:MGI:107656 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:107668 Ifna1 located_in GO:0005615 PMID:24784232 IDA C interferon alpha 1 Ifa1 protein NCBITaxon:10090 20170124 CAFA MGI:MGI:107668 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1928480 Acp3 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P15309 C acid phosphatase 3 A030005E02Rik|Acpp|PAP protein NCBITaxon:10090 20131119 CAFA part_of(UBERON:0001359)|part_of(UBERON:0001977)|part_of(UBERON:0006530) MGI:MGI:1928480 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:96543 Il1b located_in GO:0005615 PMID:24784232 IDA C interleukin 1 beta IL-1B|IL-1beta protein NCBITaxon:10090 20170124 CAFA MGI:MGI:96543 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:97005 Mmp12 located_in GO:0005615 PMID:24784232 IDA C matrix metallopeptidase 12 MMP12|Mmel|macrophage elastase protein NCBITaxon:10090 20170124 CAFA MGI:MGI:97005 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:98373 Sparc located_in GO:0005615 PMID:3427055 IDA C secreted acidic cysteine rich glycoprotein BM-40|osteonectin protein NCBITaxon:10090 20160915 CAFA MGI:MGI:98373 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 1359271 Metrnl located_in GO:0005615 PMID:24393292 ISS UniProtKB:Q8VE43 C meteorin-like, glial cell differentiation regulator protein NCBITaxon:10116 20140212 CAFA part_of(UBERON:0001013) RGD:1359271 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 2677 Gdnf located_in GO:0005615 PMID:10545102 IMP C glial cell derived neurotrophic factor protein NCBITaxon:10116 20160921 CAFA RGD:2677 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3222 Ocm located_in GO:0005615 PMID:16699509 IDA C oncomodulin protein NCBITaxon:10116 20161021 CAFA RGD:3222 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3791 Svs4 located_in GO:0005615 PMID:10583398 IDA C seminal vesicle secretory protein 4 protein NCBITaxon:10116 20161108 CAFA RGD:3791 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3791 Svs4 located_in GO:0005615 PMID:14717694 IDA C seminal vesicle secretory protein 4 protein NCBITaxon:10116 20161108 CAFA RGD:3791 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3907 Clu located_in GO:0005615 PMID:11570883 IDA C clusterin protein NCBITaxon:10116 20160826 CAFA RGD:3907 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 619893 Plg located_in GO:0005615 PMID:7964722 IDA C plasminogen protein NCBITaxon:10116 20160720 CAFA part_of(UBERON:0001969) RGD:619893 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 708479 Ctsz located_in GO:0005615 PMID:19433310 IDA C cathepsin Z protein NCBITaxon:10116 20160714 CAFA produced_by(CL:0000540) RGD:708479 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00558 PGK1 located_in GO:0005615 PMID:11130727 IDA C Phosphoglycerate kinase 1 PGK1|PGKA|MIG10|OK/SW-cl.110 protein taxon:9606 20160603 CAFA UniProtKB:P00558 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00736 C1R located_in GO:0005615 PMID:20178990 IDA C Complement C1r subcomponent C1R protein taxon:9606 20170113 CAFA UniProtKB:P00736 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00747 PLG located_in GO:0005615 PMID:14688145 IDA C Plasminogen PLG protein taxon:9606 20160531 CAFA part_of(UBERON:0001969) UniProtKB:P00747 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00747 PLG located_in GO:0005615 PMID:17307854 IDA C Plasminogen PLG protein taxon:9606 20160513 CAFA part_of(UBERON:0001977),part_of(UBERON:0001836) UniProtKB:P00747 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02751 FN1 located_in GO:0005615 PMID:15292204 IDA C Fibronectin FN1|FN protein taxon:9606 20161020 CAFA UniProtKB:P02751 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02788 LTF located_in GO:0005615 PMID:12788072 IDA C Lactotransferrin LTF|GIG12|LF protein taxon:9606 20161206 CAFA UniProtKB:P02788 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05019 IGF1 located_in GO:0005615 PMID:25152160 IDA C Insulin-like growth factor 1 IGF1|IBP1|IGF-1 protein taxon:9606 20161205 CAFA produced_by(CL:0000056) UniProtKB:P05019 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05814 CSN2 located_in GO:0005615 PMID:12788072 IDA C Beta-casein CSN2|CASB protein taxon:9606 20161206 CAFA UniProtKB:P05814 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P07602 PSAP located_in GO:0005615 PMID:1454804 IDA C Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20161019 CAFA UniProtKB:P07602 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P08253 MMP2 located_in GO:0005615 PMID:24784232 IDA C 72 kDa type IV collagenase MMP2|CLG4A protein taxon:9606 20170124 CAFA UniProtKB:P08253 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P15309 ACP3 located_in GO:0005615 PMID:10639192 IDA C Prostatic acid phosphatase ACP3|ACPP protein taxon:9606 20170112 CAFA part_of(UBERON:0001968) UniProtKB:P15309 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P22362 CCL1 located_in GO:0005615 PMID:1557400 IDA C C-C motif chemokine 1 CCL1|SCYA1 protein taxon:9606 20170110 CAFA UniProtKB:P22362 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P22894 MMP8 located_in GO:0005615 PMID:24784232 IDA C Neutrophil collagenase MMP8|CLG1 protein taxon:9606 20170124 CAFA UniProtKB:P22894 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P27797 CALR located_in GO:0005615 PMID:22377355 IMP C Calreticulin CALR|CRTC protein taxon:9606 20170109 CAFA UniProtKB:P27797 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P31025 LCN1 located_in GO:0005615 PMID:8999869 IDA C Lipocalin-1 LCN1|VEGP protein taxon:9606 20170110 CAFA UniProtKB:P31025 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P39900 MMP12 located_in GO:0005615 PMID:24784232 IMP C Macrophage metalloelastase MMP12|HME protein taxon:9606 20170124 CAFA UniProtKB:P39900 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P50281 MMP14 located_in GO:0005615 PMID:24784232 IMP C Matrix metalloproteinase-14 MMP14 protein taxon:9606 20170124 CAFA UniProtKB:P50281 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q15046 KARS1 located_in GO:0005615 PMID:15851690 IDA C Lysine--tRNA ligase KARS1|KARS|KIAA0070 protein taxon:9606 20170119 CAFA UniProtKB:Q15046 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q641Q3 METRNL located_in GO:0005615 PMID:24393292 ISS UniProtKB:Q8VE43 C Meteorin-like protein METRNL protein taxon:9606 20140212 CAFA part_of(UBERON:0001013) UniProtKB:Q641Q3 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9UBR2 CTSZ located_in GO:0005615 PMID:19433310 IDA C Cathepsin Z CTSZ protein taxon:9606 20160714 CAFA produced_by(CL:0000235) UniProtKB:Q9UBR2 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9Y258 CCL26 located_in GO:0005615 PMID:10373330 IDA C C-C motif chemokine 26 CCL26|SCYA26|UNQ216/PRO242 protein taxon:9606 20161130 CAFA UniProtKB:Q9Y258 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB A6H730 ACP3 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P15309 C Prostatic acid phosphatase ACP3|ACPP protein taxon:9913 20131119 CAFA part_of(UBERON:0001359)|part_of(UBERON:0001977)|part_of(UBERON:0006530) UniProtKB:A6H730 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02662 CSN1S1 located_in GO:0005615 PMID:22155633 IDA C Alpha-S1-casein CSN1S1 protein taxon:9913 20161018 CAFA UniProtKB:P02662 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02666 CSN2 located_in GO:0005615 PMID:12788072 IDA C Beta-casein CSN2 protein taxon:9913 20161206 CAFA UniProtKB:P02666 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02666 CSN2 located_in GO:0005615 PMID:25038658 IDA C Beta-casein CSN2 protein taxon:9913 20161018 CAFA UniProtKB:P02666 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P02784 P02784 located_in GO:0005615 PMID:10456833 IDA C Seminal plasma protein PDC-109 protein taxon:9913 20161123 CAFA UniProtKB:P02784 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P04557 P04557 located_in GO:0005615 PMID:10456833 IDA C Seminal plasma protein A3 protein taxon:9913 20161123 CAFA UniProtKB:P04557 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P07589 FN1 located_in GO:0005615 PMID:8576127 IDA C Fibronectin FN1 protein taxon:9913 20160916 CAFA UniProtKB:P07589 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P08037 B4GALT1 located_in GO:0005615 PMID:5238979 IDA C Beta-1,4-galactosyltransferase 1 B4GALT1|GALT|GGTB2 protein taxon:9913 20160601 CAFA part_of(UBERON:0001913) UniProtKB:P08037 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P24627 LTF located_in GO:0005615 PMID:12788072 IDA C Lactotransferrin LTF protein taxon:9913 20161206 CAFA UniProtKB:P24627 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P62326 TMSB4 located_in GO:0005615 PMID:10581087 IDA C Thymosin beta-4 TMSB4|THYB4 protein taxon:9913 20160615 CAFA produced_by(CL:0000576) UniProtKB:P62326 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P80457 XDH located_in GO:0005615 PMID:11005854 IDA C Xanthine dehydrogenase/oxidase XDH protein taxon:9913 20161101 CAFA UniProtKB:P80457 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P81019 P81019 located_in GO:0005615 PMID:10456833 IDA C Seminal plasma protein BSP-30 kDa protein taxon:9913 20161123 CAFA UniProtKB:P81019 `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 61

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:88005 Amelx enables GO:0042803 PMID:19086270 IDA F amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein NCBITaxon:10090 20161125 CAFA MGI:MGI:88005 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:98181 Rrm2 enables GO:0042803 PMID:8876648 IDA F ribonucleotide reductase M2 R2 protein NCBITaxon:10090 20161103 CAFA MGI:MGI:98181 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc BIOTINLIG-MONOMER BirA enables GO:0042803 PMID:11124029 IMP F DNA-binding transcriptional repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA protein NCBITaxon:83333 20161020 CAFA EcoCyc:BIOTINLIG-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc E1P-MONOMER AceE enables GO:0042803 PMID:11955070 IDA F pyruvate dehydrogenase E1 component protein NCBITaxon:83333 20161031 CAFA EcoCyc:E1P-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10416-MONOMER GrpE enables GO:0042803 PMID:9103205 IDA F nucleotide exchange factor GrpE protein NCBITaxon:83333 20160926 CAFA EcoCyc:EG10416-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:12718874 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein NCBITaxon:83333 20161017 CAFA EcoCyc:EG10571-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:12743116 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein NCBITaxon:83333 20161017 CAFA EcoCyc:EG10571-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:15735309 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein NCBITaxon:83333 20161017 CAFA EcoCyc:EG10571-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10873-MONOMER RplL enables GO:0042803 PMID:10747797 IDA F 50S ribosomal subunit protein L12 protein NCBITaxon:83333 20160630 CAFA EcoCyc:EG10873-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10978-MONOMER SspB enables GO:0042803 PMID:14536075 IMP F ClpXP protease specificity-enhancing factor protein NCBITaxon:83333 20160930 CAFA EcoCyc:EG10978-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG11249-MONOMER MazF enables GO:0042803 PMID:12718874 IDA F endoribonuclease toxin MazF protein NCBITaxon:83333 20161017 CAFA EcoCyc:EG11249-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:11183780 IMP F DNA-binding transcriptional dual regulator Fis protein NCBITaxon:83333 20161028 CAFA EcoCyc:PD00196 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:1619650 IDA F DNA-binding transcriptional dual regulator Fis protein NCBITaxon:83333 20161028 CAFA EcoCyc:PD00196 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:1946369 IMP F DNA-binding transcriptional dual regulator Fis protein NCBITaxon:83333 20161028 CAFA EcoCyc:PD00196 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:9362499 IMP F DNA-binding transcriptional dual regulator Fis protein NCBITaxon:83333 20161028 CAFA EcoCyc:PD00196 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PDXH-MONOMER PdxH enables GO:0042803 PMID:15858270 IDA F pyridoxine/pyridoxamine 5'-phosphate oxidase protein NCBITaxon:83333 20160927 CAFA EcoCyc:PDXH-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc TAR-MONOMER Tar enables GO:0042803 PMID:15916610 IMP F methyl-accepting chemotaxis protein Tar protein NCBITaxon:83333 20161017 CAFA EcoCyc:TAR-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc TRG-MONOMER Trg enables GO:0042803 PMID:15916610 IMP F methyl-accepting chemotaxis protein Trg protein NCBITaxon:83333 20161017 CAFA EcoCyc:TRG-MONOMER `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 1359514 Scly enables GO:0042803 PMID:20164179 IDA F selenocysteine lyase protein NCBITaxon:10116 20161117 CAFA RGD:1359514 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2553 Eno1 enables GO:0042803 PMID:7964722 IDA F enolase 1 protein NCBITaxon:10116 20160720 CAFA occurs_in(GO:0005886) RGD:2553 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2677 Gdnf enables GO:0042803 PMID:9187648 IDA F glial cell derived neurotrophic factor protein NCBITaxon:10116 20160913 CAFA RGD:2677 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2754 Gsta2 enables GO:0042803 PMID:15152091 IDA F glutathione S-transferase alpha 2 protein NCBITaxon:10116 20161020 CAFA RGD:2754 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 3222 Ocm enables GO:0042803 PMID:2231727 IDA F oncomodulin protein NCBITaxon:10116 20161020 CAFA RGD:3222 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 3222 Ocm enables GO:0042803 PMID:8487302 IDA F oncomodulin protein NCBITaxon:10116 20161020 CAFA RGD:3222 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`SGD S000005299 ACC1 enables GO:0042803 PMID:15341732 IMP F acetyl-CoA carboxylase ACC1 ABP2|FAS3|MTR7|YNR016C protein NCBITaxon:559292 20161111 CAFA SGD:S000005299 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P52477 mexA involved_in GO:0051260 PMID:15226509 IMP P Multidrug resistance protein MexA mexA|PA0425 protein taxon:208964 20161026 CAFA UniProtKB:P52477 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0000024 Ace enables GO:0042803 PMID:10892800 IDA F Acetylcholine esterase CG17907 protein NCBITaxon:7227 20161019 CAFA FB:FBgn0000024 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0000546 EcR enables GO:0042803 PMID:22628309 IMP F Ecdysone receptor CG1765 protein NCBITaxon:7227 20161115 CAFA FB:FBgn0000546 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:15051340 IMP F cut up CG6998 protein NCBITaxon:7227 20161115 CAFA FB:FBgn0011760 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:15581372 IMP F cut up CG6998 protein NCBITaxon:7227 20161115 CAFA FB:FBgn0011760 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:19759397 IDA F cut up CG6998 protein NCBITaxon:7227 20161115 CAFA FB:FBgn0011760 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0024432 Dlc90F enables GO:0042803 PMID:19759397 IDA F Dynein light chain 90F CG12363 protein NCBITaxon:7227 20161115 CAFA FB:FBgn0024432 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P06733 ENO1 enables GO:0042803 PMID:3529090 IDA F Alpha-enolase ENO1|ENO1L1|MBPB1|MPB1 protein taxon:9606 20160718 CAFA UniProtKB:P06733 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P07602 PSAP enables GO:0042803 PMID:18462685 IDA F Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20161018 CAFA UniProtKB:P07602 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P08238 HSP90AB1 enables GO:0042803 PMID:10811660 IDA F Heat shock protein HSP 90-beta HSP90AB1|HSP90B|HSPC2|HSPC3|HSPCB protein taxon:9606 20170110 CAFA UniProtKB:P08238 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P10912 GHR enables GO:0042803 PMID:8943276 IDA F Growth hormone receptor GHR protein taxon:9606 20160817 CAFA UniProtKB:P10912 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P15309 ACP3 enables GO:0042803 PMID:10639192 IDA F Prostatic acid phosphatase ACP3|ACPP protein taxon:9606 20170112 CAFA UniProtKB:P15309 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P17342 NPR3 enables GO:0042803 PMID:16870210 IDA F Atrial natriuretic peptide receptor 3 NPR3|ANPRC|C5orf23|NPRC protein taxon:9606 20161014 CAFA UniProtKB:P17342 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P19971 TYMP enables GO:0042803 PMID:1590793 IDA F Thymidine phosphorylase TYMP|ECGF1 protein taxon:9606 20160722 CAFA UniProtKB:P19971 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P23381 WARS1 enables GO:0042803 PMID:22504299 IDA F Tryptophan--tRNA ligase, cytoplasmic WARS1|IFI53|WARS|WRS protein taxon:9606 20170124 CAFA UniProtKB:P23381 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P24522 GADD45A enables GO:0042803 PMID:20460379 IDA F Growth arrest and DNA damage-inducible protein GADD45 alpha GADD45A|DDIT1|GADD45 protein taxon:9606 20161124 CAFA UniProtKB:P24522 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P32455 GBP1 enables GO:0042803 PMID:10676968 IDA F Guanylate-binding protein 1 GBP1 protein taxon:9606 20161215 CAFA UniProtKB:P32455 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P35638 DDIT3 enables GO:0042803 PMID:18534616 IDA F DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA UniProtKB:P35638 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P78356 PIP4K2B enables GO:0042803 PMID:9753329 IDA F Phosphatidylinositol 5-phosphate 4-kinase type-2 beta PIP4K2B|PIP5K2B protein taxon:9606 20160816 CAFA UniProtKB:P78356 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q04206 RELA enables GO:0042803 PMID:18045535 IDA F Transcription factor p65 RELA|NFKB3 protein taxon:9606 20160512 CAFA UniProtKB:Q04206 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q6PI77 GPRASP3 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q6PB60 F G protein-coupled receptor associated sorting protein 3 GPRASP3|BHLHB9|KIAA1701 protein taxon:9606 20131008 CAFA UniProtKB:Q6PI77 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q92886 NEUROG1 enables GO:0042803 PMID:20102160 IDA F Neurogenin-1 NEUROG1|BHLHA6|NEUROD3|NGN|NGN1 protein taxon:9606 20161208 CAFA UniProtKB:Q92886 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9H2S9 IKZF4 involved_in GO:0051260 PMID:15491138 IMP P Zinc finger protein Eos IKZF4|KIAA1782|ZNFN1A4 protein taxon:9606 20170111 CAFA UniProtKB:Q9H2S9 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9NVS9 PNPO enables GO:0042803 PMID:12824491 IDA F Pyridoxine-5'-phosphate oxidase PNPO protein taxon:9606 20161020 CAFA UniProtKB:Q9NVS9 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y3M2 CBY1 enables GO:0042803 PMID:21182262 IDA F Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA UniProtKB:Q9Y3M2 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y3M2 CBY1 involved_in GO:0051289 PMID:21182262 IDA P Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA UniProtKB:Q9Y3M2 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21758 MSR1 involved_in GO:0070207 PMID:11785981 IMP P Macrophage scavenger receptor types I and II MSR1 protein taxon:9913 20161011 CAFA UniProtKB:P21758 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21793 DCN enables GO:0042803 PMID:15501918 IDA F Decorin DCN protein taxon:9913 20161104 CAFA UniProtKB:P21793 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P80457 XDH enables GO:0042803 PMID:11005854 IDA F Xanthine dehydrogenase/oxidase XDH protein taxon:9913 20161101 CAFA UniProtKB:P80457 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q28181 CNGB1 enables GO:0042803 PMID:16280326 IDA F Cyclic nucleotide-gated channel beta-1 CNGB1|CNCG4 protein taxon:9913 20161101 CAFA UniProtKB:Q28181 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT1G32060 At1g32060 enables GO:0042803 PMID:16258009 IDA F Phosphoribulokinase, chloroplastic At1g32060|T12O21.4 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT1G32060 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT1G32060 At1g32060 enables GO:0042803 PMID:17947231 IDA F Phosphoribulokinase, chloroplastic At1g32060|T12O21.4 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT1G32060 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 enables GO:0042803 PMID:22514274 IDA F Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT3G26650 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:16258009 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT3G26650 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:17947231 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT3G26650 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:22514274 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein NCBITaxon:3702 20161110 CAFA AGI_LocusCode:AT3G26650 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002331 should be one of RO:0002326, RO:0002327. Repaired to RO:0002327--`UniProtKB O00469 PLOD2 involved_in GO:0008475 PMID:10934207 IDA F Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 PLOD2 protein taxon:9606 20160603 CAFA UniProtKB:O00469 `

gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q14318 FKBP8 involved_in GO:0001933 PMID:15733859 IMP P Peptidyl-prolyl cis-trans isomerase FKBP8 FKBP8|FKBP38 protein taxon:9606 20161213 CAFA UniProtKB:Q14318 `