GORULE violations assigned by HGNC-UCL

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

total: 2

messages

WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:2384968 L2hgdh involved_in GO:0044281 GO_REF:0000024 ISS UniProtKB:Q9H9P8 P L-2-hydroxyglutarate dehydrogenase protein NCBITaxon:10090 20210921 HGNC-UCL MGI:MGI:2384968 `
WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9H9P8 L2HGDH involved_in GO:0044281 PMID:16005139 IDA P L-2-hydroxyglutarate dehydrogenase, mitochondrial L2HGDH|C14orf160 protein taxon:9606 20210921 HGNC-UCL UniProtKB:Q9H9P8 `

gorule-0000016

With/From: IC annotations require a With/From GO ID

total: 1

messages

WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB P60662 MYL6 enables GO:0000146 PMID:16953301 IC GO:0000146 F Myosin light polypeptide 6 MYL6 protein taxon:9823 20070416 HGNC-UCL UniProtKB:P60662 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

total: 33

messages

WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:103033 Scg2 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P13521 C secretogranin II Chgc|SgII protein NCBITaxon:10090 20060425 HGNC-UCL MGI:MGI:103033 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:104663 Lep located_in GO:0005615 PMID:9590691 IDA C leptin protein NCBITaxon:10090 20070110 HGNC-UCL MGI:MGI:104663 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1351330 Cartpt located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:Q16568 C CART prepropeptide Cart protein NCBITaxon:10090 20070109 HGNC-UCL MGI:MGI:1351330 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1351330 Cartpt located_in GO:0005615 PMID:9590691 IDA C CART prepropeptide Cart protein NCBITaxon:10090 20070110 HGNC-UCL MGI:MGI:1351330 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:2140260 Pcsk9 located_in GO:0005615 PMID:17080197 IDA C proprotein convertase subtilisin/kexin type 9 Narc1 protein NCBITaxon:10090 20070108 HGNC-UCL MGI:MGI:2140260 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:2442987 Vwc2 located_in GO:0005615 PMID:17400546 IDA C von Willebrand factor C domain containing 2 A930041G11Rik|Brorin|cradin protein NCBITaxon:10090 20070719 HGNC-UCL MGI:MGI:2442987 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:97374 Npy located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P07808 C neuropeptide Y 0710005A05Rik protein NCBITaxon:10090 20070110 HGNC-UCL MGI:MGI:97374 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:97620 Plg located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P00747 C plasminogen Pg protein NCBITaxon:10090 20070424 HGNC-UCL MGI:MGI:97620 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P01304 NPY located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P07808 C Pro-neuropeptide Y NPY protein taxon:9823 20070110 HGNC-UCL UniProtKB:P01304 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9BDP9 CARTPT located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P49192 C Cocaine- and amphetamine-regulated transcript protein CARTPT|CART protein taxon:9823 20070110 HGNC-UCL UniProtKB:Q9BDP9 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 2272 Cartpt located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:Q16568 C CART prepropeptide protein NCBITaxon:10116 20070109 HGNC-UCL RGD:2272 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 2272 Cartpt located_in GO:0005615 PMID:9590691 IDA C CART prepropeptide protein NCBITaxon:10116 20070110 HGNC-UCL RGD:2272 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3000 Lep located_in GO:0005615 PMID:9590691 IDA C leptin protein NCBITaxon:10116 20070110 HGNC-UCL RGD:3000 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3197 Npy located_in GO:0005615 PMID:9590691 IDA C neuropeptide Y protein NCBITaxon:10116 20070110 HGNC-UCL RGD:3197 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 3626 Scg2 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P13521 C secretogranin II protein NCBITaxon:10116 20060425 HGNC-UCL RGD:3626 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RGD 728909 Pcsk9 located_in GO:0005615 PMID:12552133 ISS UniProtKB:Q80W65 C proprotein convertase subtilisin/kexin type 9 protein NCBITaxon:10116 20070530 HGNC-UCL RGD:728909 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00747 PLG located_in GO:0005615 PMID:6216475 IDA C Plasminogen PLG protein taxon:9606 20070424 HGNC-UCL UniProtKB:P00747 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P00797 REN located_in GO:0005615 PMID:12045255 IDA C Renin REN protein taxon:9606 20070105 HGNC-UCL UniProtKB:P00797 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P01303 NPY located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P07808 C Pro-neuropeptide Y NPY protein taxon:9606 20070110 HGNC-UCL UniProtKB:P01303 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P13521 SCG2 located_in GO:0005615 PMID:9473216 IDA C Secretogranin-2 SCG2|CHGC protein taxon:9606 20060425 HGNC-UCL UniProtKB:P13521 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P41159 LEP located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P41160 C Leptin LEP|OB|OBS protein taxon:9606 20070110 HGNC-UCL UniProtKB:P41159 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q16568 CARTPT located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P49192 C Cocaine- and amphetamine-regulated transcript protein CARTPT|CART protein taxon:9606 20070110 HGNC-UCL UniProtKB:Q16568 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q16568 CARTPT located_in GO:0005615 PMID:11711504 IDA C Cocaine- and amphetamine-regulated transcript protein CARTPT|CART protein taxon:9606 20070109 HGNC-UCL UniProtKB:Q16568 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q2TAL6 VWC2 located_in GO:0005615 PMID:17400546 ISS UniProtKB:Q8C8N3 C Brorin VWC2|UNQ739/PRO1434 protein taxon:9606 20070719 HGNC-UCL UniProtKB:Q2TAL6 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q8NBP7 PCSK9 located_in GO:0005615 PMID:12552133 IDA C Proprotein convertase subtilisin/kexin type 9 PCSK9|NARC1|PSEC0052 protein taxon:9606 20070525 HGNC-UCL UniProtKB:Q8NBP7 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q8NBP7 PCSK9 located_in GO:0005615 PMID:16912035 IDA C Proprotein convertase subtilisin/kexin type 9 PCSK9|NARC1|PSEC0052 protein taxon:9606 20070108 HGNC-UCL UniProtKB:Q8NBP7 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q8NBP7 PCSK9 located_in GO:0005615 PMID:17080197 IDA C Proprotein convertase subtilisin/kexin type 9 PCSK9|NARC1|PSEC0052 protein taxon:9606 20070108 HGNC-UCL UniProtKB:Q8NBP7 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q96QU1 PCDH15 located_in GO:0005615 PMID:16369489 IDA C Protocadherin-15 PCDH15|USH1F protein taxon:9606 20071011 HGNC-UCL UniProtKB:Q96QU1-3 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P20616 SCG2 located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P13521 C Secretogranin-2 SCG2|CHGC protein taxon:9913 20060425 HGNC-UCL UniProtKB:P20616 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P50595 LEP located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P41160 C Leptin LEP|OB|OBS protein taxon:9913 20070110 HGNC-UCL UniProtKB:P50595 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q68RJ9 CARTPT located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P49192 C Cocaine- and amphetamine-regulated transcript protein CARTPT|CART protein taxon:9913 20070110 HGNC-UCL UniProtKB:Q68RJ9 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q6RUW3 NPY located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P07808 C Pro-neuropeptide Y NPY protein taxon:9913 20070110 HGNC-UCL UniProtKB:Q6RUW3 `
WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O02720 LEP located_in GO:0005615 GO_REF:0000024 ISS UniProtKB:P41160 C Leptin LEP|OB protein taxon:9615 20070110 HGNC-UCL UniProtKB:O02720 `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

total: 16

messages

WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1891731 Stub1 enables GO:0042803 PMID:16307917 IPI UniProtKB:Q9WUD1 F STIP1 homology and U-Box containing protein 1 0610033N24Rik|2210017D18Rik|2310040B03Rik|CHIP protein NCBITaxon:10090 20230221 HGNC-UCL MGI:MGI:1891731 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1926483 Nectin1 enables GO:0042803 PMID:12826663 IPI UniProtKB:Q9JKF6 F nectin cell adhesion molecule 1 Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1 protein NCBITaxon:10090 20230221 HGNC-UCL MGI:MGI:1926483 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1930171 Nectin3 enables GO:0042803 PMID:12826663 IPI UniProtKB:Q9JLB9 F nectin cell adhesion molecule 3 2610301B19Rik|3000002N23Rik|4921513D19Rik|Pvrl3|nectin-3 protein NCBITaxon:10090 20230221 HGNC-UCL MGI:MGI:1930171 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:2137858 Cadm3 enables GO:0042803 PMID:12826663 IPI UniProtKB:Q99N28 F cell adhesion molecule 3 BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1 protein NCBITaxon:10090 20230221 HGNC-UCL MGI:MGI:2137858 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:97822 Nectin2 enables GO:0042803 PMID:12826663 IPI UniProtKB:P32507 F nectin cell adhesion molecule 2 Cd112|MPH|Pvrl2|Pvs|nectin-2 protein NCBITaxon:10090 20230221 HGNC-UCL MGI:MGI:97822 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P13945 ADRB3 enables GO:0042803 PMID:15123695 IDA F Beta-3 adrenergic receptor ADRB3|ADRB3R|B3AR protein taxon:9606 20060628 HGNC-UCL UniProtKB:P13945 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P20585 MSH3 NOT|enables GO:0042803 PMID:8942985 IDA F DNA mismatch repair protein Msh3 MSH3|DUC1|DUG protein taxon:9606 20060905 HGNC-UCL UniProtKB:P20585 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21549 AGXT enables GO:0042803 PMID:12899834 IDA F Alanine--glyoxylate aminotransferase AGXT|AGT1|SPAT protein taxon:9606 20060810 HGNC-UCL UniProtKB:P21549 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P43246 MSH2 enables GO:0042803 PMID:8942985 IDA F DNA mismatch repair protein Msh2 MSH2 protein taxon:9606 20060905 HGNC-UCL UniProtKB:P43246 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q07812 BAX enables GO:0042803 PMID:16608847 IDA F Apoptosis regulator BAX BAX|BCL2L4 protein taxon:9606 20070301 HGNC-UCL UniProtKB:Q07812 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q12904 AIMP1 enables GO:0042803 PMID:11306575 IDA F Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 AIMP1|EMAP2|SCYE1 protein taxon:9606 20071018 HGNC-UCL UniProtKB:Q12904 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q15257 PTPA enables GO:0042803 PMID:16916641 IDA F Serine/threonine-protein phosphatase 2A activator PTPA|PPP2R4 protein taxon:9606 20070426 HGNC-UCL UniProtKB:Q15257 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9NPP4 NLRC4 enables GO:0042803 PMID:15107016 IDA F NLR family CARD domain-containing protein 4 NLRC4|CARD12|CLAN|CLAN1|IPAF|UNQ6189/PRO20215 protein taxon:9606 20060524 HGNC-UCL UniProtKB:Q9NPP4 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9ULZ3 PYCARD enables GO:0042803 PMID:15030775 IDA F Apoptosis-associated speck-like protein containing a CARD PYCARD|ASC|CARD5|TMS1 protein taxon:9606 20060525 HGNC-UCL UniProtKB:Q9ULZ3 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y2G2 CARD8 enables GO:0042803 PMID:15030775 IDA F Caspase recruitment domain-containing protein 8 CARD8|DACAR|KIAA0955|NDPP1 protein taxon:9606 20060525 HGNC-UCL UniProtKB:Q9Y2G2 `
WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y697 NFS1 enables GO:0042803 PMID:16527810 IDA F Cysteine desulfurase NFS1|NIFS|HUSSY-08 protein taxon:9606 20071022 HGNC-UCL UniProtKB:Q9Y697 `

gorule-0000061

Allowed gene product to term relations (gp2term)

total: 2

messages

WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P12883 MYH7 is_active_in GO:0016459 PMID:12933792 TAS C Myosin-7 MYH7|MYHCB protein taxon:9606 20240214 HGNC-UCL UniProtKB:P12883 `
WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P13533 MYH6 is_active_in GO:0016459 PMID:12933792 TAS C Myosin-6 MYH6|MYHCA protein taxon:9606 20240214 HGNC-UCL UniProtKB:P13533 `

GORULE violations assigned by HGNC-UCL

Contents

MESSAGES

gorule-0000008

messages

gorule-0000016

messages

gorule-0000020

messages

gorule-0000046

messages

gorule-0000061

messages