GORULE violations assigned by pombase

Contents

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 18

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC13F5.03c gld1 involved_in GO:0061613 PMID:20396879 IMP P mitochondrial glycerol dehydrogenase Gld1 protein NCBITaxon:4896 20170905 PomBase part_of(GO:0042149) PomBase:SPAC13F5.03c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC56F8.07 ema19 involved_in GO:0006626 GO_REF:0000024 ISO SGD:S000004040 P ER membrane integral protein involved in protein targeting to mitochondrion Ema19 ceo1 protein NCBITaxon:4896 20211121 PomBase PomBase:SPAC56F8.07 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC11C11.06c SPBC11C11.06c involved_in GO:0006626 GO_REF:0000024 ISO SGD:S000000434 P mitochondrial outer membrane receptor for cytosolic ribosomes protein NCBITaxon:4896 20240810 PomBase PomBase:SPBC11C11.06c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC428.04 apq12 involved_in GO:0006643 PMID:22042620 IMP P nuclear membrane organization protein Apq12 protein NCBITaxon:4896 20201218 PomBase PomBase:SPBC428.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC13F5.03c gld1 involved_in GO:0019564 PMID:20396879 IMP P mitochondrial glycerol dehydrogenase Gld1 protein NCBITaxon:4896 20120227 PomBase part_of(GO:0042149) PomBase:SPAC13F5.03c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC926.09c fas1 involved_in GO:0046467 GO_REF:0000111 IC GO:0005835 P fatty acid synthase beta subunit Fas1 protein NCBITaxon:4896 20201223 PomBase PomBase:SPAC926.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC530.12c pdf1 involved_in GO:0046467 GO_REF:0000024 ISO SGD:S000003268 P palmitoyl protein thioesterase/ dolichol pyrophosphate phosphatase fusion protein Pdf1 protein NCBITaxon:4896 20050926 PomBase PomBase:SPBC530.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC1296.03c sxa2 involved_in GO:0051603 PMID:10792724 IMP P serine carboxypeptidase Sxa2 protein NCBITaxon:4896 20121126 PomBase PomBase:SPAC1296.03c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC119.17 cym1 involved_in GO:0051603 GO_REF:0000024 ISO SGD:S000002838 P mitochondrial metalloendopeptidase SPBC577.01|ppp37 protein NCBITaxon:4896 20100615 PomBase PomBase:SPBC119.17 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1685.05 htr11 involved_in GO:0051603 GO_REF:0000024 ISO SGD:S000005067 P serine protease ppp45 protein NCBITaxon:4896 20080814 PomBase PomBase:SPBC1685.05 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC1919.12c erm2 involved_in GO:0051603 GO_REF:0000051 NAS P multi-spanning vacuolar membrane protease ppp60 protein NCBITaxon:4896 20170819 PomBase PomBase:SPCC1919.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `