GORULE violations assigned by pombase

Contents

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 20

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC513.07 SPAC513.07 involved_in GO:0061727 GO_REF:0000111 IC GO:0043892 P flavonol reductase/cinnamoyl-CoA reductase family protein NCBITaxon:4896 20180324 PomBase PomBase:SPAC513.07 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPBC1773.04 SPBC1773.04 involved_in GO:0061727 GO_REF:0000111 IC GO:0043892 P methylglyoxyl reductase (NADPH-dependent) protein NCBITaxon:4896 20180302 PomBase PomBase:SPBC1773.04 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPBC646.12c gap1 enables GO:0005096 PMID:29453312 IDA F RasGAP Gap1 sar1|src1 protein NCBITaxon:4896 20180302 PomBase occurs_in(GO:0005937),part_of(GO:1905708) PomBase:SPBC646.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.11 rbd1 involved_in GO:0006465 GO_REF:0000024 ISO SGD:S000003333 P mitochondrial rhomboid family peptidase Rbd1 SPBC30D10.19c|ppp72|rh1 protein NCBITaxon:4896 20050503 PomBase PomBase:SPBC13E7.11 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.11 rbd1 involved_in GO:0034982 GO_REF:0000111 IC GO:0005739,GO:0006465 P mitochondrial rhomboid family peptidase Rbd1 SPBC30D10.19c|ppp72|rh1 protein NCBITaxon:4896 20201112 PomBase PomBase:SPBC13E7.11 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC17H9.13c pro2 involved_in GO:0006542 GO_REF:0000051 NAS P glutamate 5-kinase Pro2 protein NCBITaxon:4896 20090126 PomBase PomBase:SPAC17H9.13c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC23H4.06 gln1 involved_in GO:0006542 PMID:2900077 IMP P glutamate-ammonia ligase Gln1 gog1 protein NCBITaxon:4896 20130530 PomBase PomBase:SPAC23H4.06 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC23H4.06 gln1 involved_in GO:0006542 PMID:7773104 IDA P glutamate-ammonia ligase Gln1 gog1 protein NCBITaxon:4896 20160629 PomBase PomBase:SPAC23H4.06 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC3H1.07 aru1 involved_in GO:0010121 PMID:20460254 IMP P arginase Aru1 car3 protein NCBITaxon:4896 20140619 PomBase PomBase:SPAC3H1.07 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC21C3.08c car2 involved_in GO:0010121 PMID:20460254 IMP P ornithine transaminase Car2 protein NCBITaxon:4896 20140619 PomBase PomBase:SPBC21C3.08c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP26C9.02c car1 involved_in GO:0010121 PMID:20460254 IMP P arginase Car1 protein NCBITaxon:4896 20140619 PomBase PomBase:SPBP26C9.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC824.07 glo2 involved_in GO:0019243 GO_REF:0000024 ISO SGD:S000005566 P glyoxalase II protein NCBITaxon:4896 20050912 PomBase PomBase:SPAC824.07 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC13B11.03c SPCC13B11.03c involved_in GO:0019243 GO_REF:0000024 ISO SGD:S000005566 P hydroxyacylglutathione hydrolase protein NCBITaxon:4896 20050912 PomBase PomBase:SPCC13B11.03c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `