GORULE violations assigned by pombase

Contents

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC18G6.04c shm2 is_active_in GO:0005759 GO_REF:0000111 IC C serine hydroxymethyltransferase Shm2 protein NCBITaxon:4896 20260202 PomBase PomBase:SPAC18G6.04c `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 39

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPBC359.02 alr2 involved_in GO:0006522 GO_REF:0000024 ISS PomBase:SPCC965.08c P alanine racemase Alr2 protein NCBITaxon:4896 20040611 PomBase PomBase:SPBC359.02 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC57A7.07c SPAC57A7.07c involved_in GO:0019284 GO_REF:0000111 IC GO:0008898 P homocysteine methyltransferase protein NCBITaxon:4896 20250312 PomBase PomBase:SPAC57A7.07c `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC1039.02 efn2 enables GO:0008253 PMID:39660919 EXP F extracellular 5'-nucleotidase, human NT5E family Efn2 protein NCBITaxon:4896 20241213 PomBase happens_during(GO:0016036),occurs_in(GO:0005615) PomBase:SPAC1039.02 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBPB2B2.06c efn1 enables GO:0008253 PMID:39660919 EXP F extracellular 5'-nucleotidase, human NT5E family Efn1 protein NCBITaxon:4896 20241213 PomBase happens_during(GO:0016036),occurs_in(GO:0005615) PomBase:SPBPB2B2.06c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC1952.09c ach1 involved_in GO:0019427 GO_REF:0000111 IC GO:0008775 P acetyl-CoA hydrolase/succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial Ach1 protein NCBITaxon:4896 20250124 PomBase PomBase:SPAC1952.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC17C9.02c lys7 involved_in GO:0019878 PMID:3142867 IMP P alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 protein NCBITaxon:4896 20130924 PomBase PomBase:SPAC17C9.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:17622533 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC227.18 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC227.18 lys3 involved_in GO:0019878 PMID:3142867 IMP P saccharopine dehydrogenase Lys3 SPAC2F7.01 protein NCBITaxon:4896 20050509 PomBase PomBase:SPAC227.18 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC31G5.04 lys12 involved_in GO:0019878 PMID:17622533 IMP P homoisocitrate dehydrogenase Lys12 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC31G5.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:17622533 IMP P homoaconitate hydratase Lys2 protein NCBITaxon:4896 20130920 PomBase PomBase:SPAC343.16 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC343.16 lys2 involved_in GO:0019878 PMID:3142867 IMP P homoaconitate hydratase Lys2 protein NCBITaxon:4896 20130924 PomBase PomBase:SPAC343.16 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:3142867 IMP P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20130924 PomBase PomBase:SPAP7G5.04c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAP7G5.04c lys1 involved_in GO:0019878 PMID:8590464 IMP P aminoadipate-semialdehyde dehydrogenase protein NCBITaxon:4896 20121004 PomBase PomBase:SPAP7G5.04c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1105.02c lys4 enables GO:0004410 PMID:20089861 IDA F homocitrate synthase protein NCBITaxon:4896 20230705 PomBase part_of(GO:0019878) PomBase:SPBC1105.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:16299000 IMP P homocitrate synthase protein NCBITaxon:4896 20050429 PomBase PomBase:SPBC1105.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:17622533 IMP P homocitrate synthase protein NCBITaxon:4896 20130920 PomBase PomBase:SPBC1105.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:20089861 EXP P homocitrate synthase protein NCBITaxon:4896 20230705 PomBase PomBase:SPBC1105.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1105.02c lys4 involved_in GO:0019878 PMID:3142867 IMP P homocitrate synthase protein NCBITaxon:4896 20130924 PomBase PomBase:SPBC1105.02c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC8C9.16c oxr1 involved_in GO:0030641 GO_REF:0000024 ISO SGD:S000006117 P V-type ATPase inhibitor and disassembly protein in response to oxidative stress Oxr1 mug63 protein NCBITaxon:4896 20220214 PomBase PomBase:SPAC8C9.16c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC4G9.09c arg11 involved_in GO:0042450 PMID:1313366 IMP P N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase protein NCBITaxon:4896 20030613 PomBase PomBase:SPAC4G9.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC4G9.09c arg11 involved_in GO:0042450 PMID:32896087 EXP P N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase protein NCBITaxon:4896 20240717 PomBase PomBase:SPAC4G9.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:1313366 IMP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20040917 PomBase PomBase:SPAC4G9.10 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:18849471 IMP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20140612 PomBase PomBase:SPAC4G9.10 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC4G9.10 arg3 involved_in GO:0042450 PMID:32896087 EXP P ornithine carbamoyltransferase Arg3 protein NCBITaxon:4896 20240717 PomBase PomBase:SPAC4G9.10 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1271.14 aga1 involved_in GO:0042450 PMID:32896087 EXP P acetyl-CoA:L-glutamate N-acetyltransferase arg7 protein NCBITaxon:4896 20201219 PomBase PomBase:SPBC1271.14 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1539.03c arg41 involved_in GO:0042450 PMID:32896087 EXP P argininosuccinate lyase protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC1539.03c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC215.08c arg4 involved_in GO:0042450 PMID:32896087 EXP P arginine specific carbamoyl-phosphate synthase Arg4 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC215.08c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC428.05c arg12 involved_in GO:0042450 PMID:32896087 EXP P argininosuccinate synthase Arg12 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC428.05c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC56F2.09c arg5 involved_in GO:0042450 PMID:32896087 EXP P arginine specific carbamoyl-phosphate synthase subunit Arg5 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC56F2.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC725.14 arg6 involved_in GO:0042450 PMID:32896087 EXP P acetylglutamate synthase Arg6 protein NCBITaxon:4896 20240717 PomBase PomBase:SPBC725.14 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC777.09c arg1 involved_in GO:0042450 PMID:32896087 EXP P acetylornithine aminotransferase protein NCBITaxon:4896 20240717 PomBase PomBase:SPCC777.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPCC4B3.18 ppc1 involved_in GO:1990181 PMID:23091701 IMP P phosphopantothenate-cysteine ligase Cab2 cab2 protein NCBITaxon:4896 20130905 PomBase PomBase:SPCC4B3.18 `