GORULE violations assigned by pombase

Contents

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

MESSAGES

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC11H11.04 mam2 enables GO:0005085 GO_REF:0000111 IC F pheromone p-factor receptor Mam2 protein NCBITaxon:4896 20260415 PomBase PomBase:SPAC11H11.04 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC18G6.04c shm2 is_active_in GO:0005759 GO_REF:0000111 IC C serine hydroxymethyltransferase Shm2 protein NCBITaxon:4896 20260202 PomBase PomBase:SPAC18G6.04c `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein NCBITaxon:4896 20250318 PomBase PomBase:SPAC328.09 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPBC31F10.07 lsb5 enables GO:0030674 GO_REF:0000111 IC F actin cortical patch component Lsb5 protein NCBITaxon:4896 20260422 PomBase PomBase:SPBC31F10.07 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 8

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC1D4.06c csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P cyclin-dependent kinase activating kinase Csk1 protein NCBITaxon:4896 20090506 PomBase PomBase:SPAC1D4.06c `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPAC3H5.09c hob2 enables GO:0043495 PMID:34415038 TAS F ER-PM contact site phospholipid-binding protein Hob2 protein NCBITaxon:4896 20210823 PomBase part_of(GO:0061817) PomBase:SPAC3H5.09c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein NCBITaxon:4896 20240724 PomBase PomBase:SPAC222.12c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC13E7.04 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC1734.13 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein NCBITaxon:4896 20240724 PomBase PomBase:SPBC31F10.15c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBP4H10.17c SPBP4H10.17c involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P protein repair carboxyl methyl esterase, Pme1 protein NCBITaxon:4896 20180213 PomBase PomBase:SPBP4H10.17c `

gorule-0000027

Each identifier in GAF is valid

• total: 1

messages

• WARNING - Unknown identifier:Class ID GO:0004265 is not present in the ontology--`PomBase SPAC1F12.09 gpi17 is_active_in GO:0098553 GO_REF:0000111 IC GO:0004265 C GPI-anchor transamidase complex subunit Pig-S, Gpi17 protein NCBITaxon:4896 20260312 PomBase PomBase:SPAC1F12.09 `