GORULE violations assigned by xenbase

Contents

gorule-0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000065 Annotations to term that are candidates for obsoletion should be produce a warning

MESSAGES

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 5

messages

• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`Xenbase XB-GENE-1017281 trim36 is_active_in GO:0005938 PMID:23615278 IEP C tripartite motif containing 36 Haprin protein taxon:8364 20220222 Xenbase `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`Xenbase XB-GENE-1034769 sox9 enables GO:0003714 PMID:22927467 IEP F SRY-box 9 cmd1|cmpd1|sox-9|sox9-a|sox9-b|sra1 protein taxon:8364 20220222 Xenbase part_of(GO:0014029) `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`Xenbase XB-GENE-1034769 sox9 enables GO:0003714 PMID:22927467 IEP F SRY-box 9 cmd1|cmpd1|sox-9|sox9-a|sox9-b|sra1 protein taxon:8364 20220222 Xenbase part_of(GO:0048839) `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`Xenbase XB-GENE-6486303 kmt2d.L is_active_in GO:0005737 PMID:31813957 IEP C lysine methyltransferase 2D L homeolog mll2 protein taxon:8355 20200626 Xenbase `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`Xenbase XB-GENE-866460 aurka.L located_in GO:0005813 PMID:39344321 IEP C aurora kinase A L homeolog aik|ark1|aur-a|aura|aurora2|Aurora A|Aurora-A|btak|Eg2|pEg2|stk15|stk6|stk7 protein taxon:8355 20260410 Xenbase `

gorule-0000013

Taxon-appropriate annotation check

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`Xenbase XB-GENE-17342057 notch1.L acts_upstream_of_or_within GO:1905275 PMID:31899211 IMP P notch 1 receptor L homeolog notch|notch-1|xnotch|x-notch-1|xnotch1|xotch protein taxon:8355 20200626 Xenbase `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 2

messages

• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`Xenbase XB-GENE-856300 foxj1.L acts_upstream_of_or_within_positive_effect GO:0097711 PMID:24048590 NAS P forkhead box J1 L homeolog foxj1.1|foxj1-a|foxj1-b|hfh-4|hfh4|xfoxj1 protein taxon:8355 20220509 Xenbase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`Xenbase XB-GENE-977569 odf2.L acts_upstream_of_or_within GO:0097711 PMID:39864486 IMP Xenbase:XB-MORPHOLINO-29231311|Xenbase:XB-MORPHOLINO-29231312 P outer dense fiber of sperm tails 2 L homeolog cenexin protein taxon:8355 20260406 Xenbase `

gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`Xenbase XB-GENE-17340943 ccdc88c.L acts_upstream_of_or_within GO:0007258 PMID:16026968 IMP P coiled-coil domain containing 88C L homeolog daple|LOC108698716|LOC108699825|XDal protein taxon:8355 20181026 Xenbase `
• WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`Xenbase XB-GENE-483735 fzd7.L acts_upstream_of_or_within GO:0007258 PMID:16026968 IMP P frizzled class receptor 7 L homeolog frizzled 7|frizzled-7|frizzled7|frz-7|frz7|fz7|Fz-7|Xfz7 protein taxon:8355 20190411 Xenbase `