quality
type: Class
subclass of: BFO_0000020
IAO_0000115: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
has alternative id: PATO:0000072
has OBO namespace: quality
id: PATO:0000001

Axiom
annotated source: quality
annotated property: IAO_0000115
annotated target: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
has db xref: PATOC:GVG

concentration of
type: Class
subclass of: amount
IAO_0000115: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
has exact synonym: concentration
has OBO namespace: quality
id: PATO:0000033
in subset: attribute slim
in subset: relational slim
in subset: scalar slim

Axiom
annotated source: concentration of
annotated property: IAO_0000115
annotated target: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
has db xref: Wikipedia:http://en.wikipedia.org/wiki/concentration

morphology
type: Class
subclass of: physical object quality
IAO_0000115: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
has OBO namespace: quality
id: PATO:0000051
in subset: attribute slim

Axiom
annotated source: morphology
annotated property: IAO_0000115
annotated target: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
has db xref: PATOC:GVG

shape
type: Class
subclass of: morphology
IAO_0000115: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
has alternative id: PATO:0001647
has exact synonym: relational shape quality
has OBO namespace: quality
id: PATO:0000052
in subset: attribute slim
comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.

Axiom
annotated source: shape
annotated property: IAO_0000115
annotated target: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
has db xref: PATOC:GVG

amount
type: Class
subclass of: quantitative
subclass of: Restriction
  on property: RO_0015012
  some values from: has number of
IAO_0000115: The number of entities of this type that are part of the whole organism.
has alternative id: PATO:0000053
has alternative id: PATO:0000071
has alternative id: PATO:0001169
has alternative id: PATO:0001226
has exact synonym: presence or absence in organism
has exact synonym: quantitative
has OBO namespace: quality
has related synonym: count in organism
has related synonym: number
has related synonym: presence
id: PATO:0000070
in subset: attribute slim
comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.

Axiom
annotated source: amount
annotated property: IAO_0000115
annotated target: The number of entities of this type that are part of the whole organism.
has db xref: PATOC:GVG

structure
type: Class
subclass of: morphology
IAO_0000115: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
has alternative id: PATO:0001452
has broad synonym: conformation
has exact synonym: relational structural quality
has OBO namespace: quality
id: PATO:0000141
in subset: attribute slim

Axiom
annotated source: structure
annotated property: IAO_0000115
annotated target: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
has db xref: PATOC:GVG

Axiom
annotated source: structure
annotated property: hasBroadSynonym
annotated target: conformation
has db xref: VT:1000738

brood size
type: Class
subclass of: brood quality
IAO_0000115: A reproductive quality inhering in the young of an animal by virtue of their number.
has OBO namespace: quality
has related synonym: litter size
id: PATO:0000276
in subset: attribute slim
in subset: scalar slim

Axiom
annotated source: brood size
annotated property: IAO_0000115
annotated target: A reproductive quality inhering in the young of an animal by virtue of their number.
has db xref: PATOC:GVG

circular
type: Class
subclass of: elliptic
IAO_0000115: A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
has OBO namespace: quality
has related synonym: round
has related synonym: rounded
id: PATO:0000411
in subset: cell quality
in subset: mpath slim
in subset: value slim

Axiom
annotated source: circular
annotated property: IAO_0000115
annotated target: A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
has db xref: thefreedictionary.com:thefreedictionary.com

elliptic
type: Class
subclass of: superelliptic
IAO_0000115: A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.
has exact synonym: ellipse-shaped
has exact synonym: ellipsoid
has exact synonym: elliptical
has OBO namespace: quality
has related synonym: oval
has related synonym: ovoid
id: PATO:0000947
in subset: cell quality
in subset: mpath slim
in subset: value slim

Axiom
annotated source: elliptic
annotated property: IAO_0000115
annotated target: A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.
has db xref: PATOC:GVG

physical quality
type: Class
subclass of: physical object quality
IAO_0000115: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
has alternative id: PATO:0002079
has db xref: Wikipedia:Physical_property
has exact synonym: relational physical quality
has OBO namespace: quality
id: PATO:0001018
in subset: attribute slim

Axiom
annotated source: physical quality
annotated property: IAO_0000115
annotated target: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
has db xref: PATOC:GVG

process quality
type: Class
subclass of: quality
disjoint with: physical object quality
IAO_0000115: A quality which inheres in an process.
has alternative id: PATO:0001239
has alternative id: PATO:0001240
has exact synonym: quality of a process
has exact synonym: quality of occurrent
has exact synonym: quality of process
has exact synonym: relational quality of occurrent
has OBO namespace: quality
id: PATO:0001236
comment: See comments of relational quality of a physical entity.

Axiom
annotated source: process quality
annotated property: IAO_0000115
annotated target: A quality which inheres in an process.
has db xref: PATOC:GVG

physical object quality
type: Class
subclass of: quality
IAO_0000115: A quality which inheres in a continuant.
has alternative id: PATO:0001237
has alternative id: PATO:0001238
has db xref: snap:Quality
has exact synonym: monadic quality of a continuant
has exact synonym: multiply inhering quality of a physical entity
has exact synonym: quality of a continuant
has exact synonym: quality of a single physical entity
has exact synonym: quality of an object
has exact synonym: quality of continuant
has narrow synonym: monadic quality of an object
has narrow synonym: monadic quality of continuant
has OBO namespace: quality
id: PATO:0001241
comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

Axiom
annotated source: physical object quality
annotated property: IAO_0000115
annotated target: A quality which inheres in a continuant.
has db xref: PATOC:GVG

buoyancy
type: Class
subclass of: physical quality
IAO_0000115: A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air.
has OBO namespace: quality
id: PATO:0001420
in subset: attribute slim
in subset: disposition slim
in subset: scalar slim

Axiom
annotated source: buoyancy
annotated property: IAO_0000115
annotated target: A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air.
has db xref: PATOC:GVG

reproductive quality
type: Class
subclass of: organismal quality
IAO_0000115: An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
has OBO namespace: quality
id: PATO:0001434

Axiom
annotated source: reproductive quality
annotated property: IAO_0000115
annotated target: An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
has db xref: WordNet:WordNet

brood quality
type: Class
subclass of: reproductive quality
IAO_0000115: A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.
has OBO namespace: quality
id: PATO:0001496
in subset: attribute slim

Axiom
annotated source: brood quality
annotated property: IAO_0000115
annotated target: A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.
has db xref: WordNet:WordNet

has number of
type: Class
subclass of: amount
IAO_0000115: The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
has db xref: OBO_REL:has_part
has exact synonym: extra or missing physical or functional parts
has exact synonym: has or lacks parts of type
has exact synonym: mereological quality
has exact synonym: number of
has OBO namespace: quality
has related synonym: cardinality
has related synonym: number
id: PATO:0001555
in subset: attribute slim
in subset: relational slim

Axiom
annotated source: has number of
annotated property: IAO_0000115
annotated target: The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
has db xref: PATOC:CJM

acidity
type: Class
subclass of: concentration of
IAO_0000115: A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).
has exact synonym: pH
has OBO namespace: quality
id: PATO:0001842
in subset: attribute slim
in subset: scalar slim

Axiom
annotated source: acidity
annotated property: IAO_0000115
annotated target: A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).
has db xref: biology-online:biology-online

cylindrical
type: Class
subclass of: convex 3-D shape
subclass of: Restriction
  on property: RO_0015011
  some values from: circular
IAO_0000115: A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section.
has alternative id: PATO:0001203
has exact synonym: rod-like
has exact synonym: rod-shaped
has narrow synonym: tubulate
has OBO namespace: quality
id: PATO:0001873
in subset: cell quality
in subset: value slim

Axiom
annotated source: cylindrical
annotated property: IAO_0000115
annotated target: A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section.
has db xref: PATOC:MAH

organismal quality
type: Class
subclass of: physical object quality
IAO_0000115: A quality that inheres in an entire organism or part of an organism.
has OBO namespace: quality
id: PATO:0001995

Axiom
annotated source: organismal quality
annotated property: IAO_0000115
annotated target: A quality that inheres in an entire organism or part of an organism.
has db xref: PATOC:CJM

2-D shape
type: Class
subclass of: shape
IAO_0000115: A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.
has OBO namespace: quality
has related synonym: 2-D projection
has related synonym: cross-sectional
id: PATO:0002006
in subset: attribute slim

Axiom
annotated source: 2-D shape
annotated property: IAO_0000115
annotated target: A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.
has db xref: PATOC:CJM

convex 3-D shape
type: Class
subclass of: 3-D shape
subclass of: Restriction
  on property: RO_0015011
  some values from: 2-D shape
IAO_0000115: A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.
RO_0002604: PATO_0002008
has db xref: Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png
has OBO namespace: quality
id: PATO:0002007
in subset: attribute slim
comment: Use this term or an is_a child of this term when the entire shape of the object is known.

Axiom
annotated source: convex 3-D shape
annotated property: IAO_0000115
annotated target: A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.
has db xref: PATOC:CJM

subcylindrical
type: Class
subclass of: cylindrical
IAO_0000115: A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.
contributor: 0000-0002-2061-091X
creation date: 2010-07-13T04:22:30Z
has OBO namespace: quality
id: PATO:0002226
in subset: value slim

Axiom
annotated source: subcylindrical
annotated property: IAO_0000115
annotated target: A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.
has db xref: url:http://www.thefreedictionary.com/Subcylindrical

3-D shape
type: Class
subclass of: shape
IAO_0000115: A shape that inheres in a 3 dimensional entity.
contributor: 0000-0002-2061-091X
creation date: 2010-10-05T12:31:16Z
has OBO namespace: quality
id: PATO:0002266

Axiom
annotated source: 3-D shape
annotated property: IAO_0000115
annotated target: A shape that inheres in a 3 dimensional entity.
has db xref: PATOC:OREGON

fiber shaped
type: Class
subclass of: subcylindrical
IAO_0000115: A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.
contributor: 0000-0002-2061-091X
creation date: 2011-09-09T04:50:10Z
has OBO namespace: quality
id: PATO:0002309
in subset: value slim
comment: Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope).

Axiom
annotated source: fiber shaped
annotated property: IAO_0000115
annotated target: A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.
has db xref: PATOC:DC

superelliptic
type: Class
subclass of: 2-D shape
IAO_0000115: A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt
contributor: 0000-0002-2061-091X
creation date: 2011-10-12T12:45:16Z
has exact synonym: Lamé curve
has OBO namespace: quality
id: PATO:0002318

Axiom
annotated source: superelliptic
annotated property: IAO_0000115
annotated target: A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt
has db xref: wiktionary:superellipse

single organismal process quality
type: Class
subclass of: process quality
IAO_0000115: A quality inhering in a process by virtue of that process having exactly one organism as a participant.
contributor: 0000-0002-2061-091X
creation date: 2013-10-10T04:09:51Z
has OBO namespace: quality
id: PATO:0002487
in subset: attribute slim

Axiom
annotated source: single organismal process quality
annotated property: IAO_0000115
annotated target: A quality inhering in a process by virtue of that process having exactly one organism as a participant.
has db xref: PATOC:DS

polymeric
type: Class
subclass of: structure
IAO_0000115: A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array.
has OBO namespace: quality
id: PATO:0015006
in subset: value slim
comment: A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline.

Axiom
annotated source: polymeric
annotated property: IAO_0000115
annotated target: A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array.
has db xref: GOC:DOS
has db xref: https://github.com/pato-ontology/pato/issues/78

quantitative
type: Class
subclass of: quality
IAO_0000115: A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value.
created by: https://orcid.org/0000-0001-8314-2140
has OBO namespace: quality
id: PATO:0103000

Axiom
annotated source: quantitative
annotated property: IAO_0000115
annotated target: A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value.
has db xref: https://libguides.macalester.edu/c.php
has db xref: https://www.nnlm.gov/guides/data-glossary/quantitative-data