GO Rule Violations by Group Dataset

Generated on 2024-07-19
Rule ecocyc goa_chicken goa_cow goa_dog goa_human goa_pig mgi paint_cgd paint_dictybase paint_ecocyc paint_fb paint_goa_chicken paint_goa_human paint_mgi paint_other paint_pombase paint_rgd paint_sgd paint_tair paint_wb paint_xenbase paint_zfin pseudocap wb

GAF lines are parsed according to GAF 2.2 specifications:
gorule-0000001

0 5 41 7 1207 40 0 0 0 0 0 0 0 0 57 0 0 0 0 0 0 0 1739 0

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515':
gorule-0000002

0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding'':
gorule-0000005

0 2 21 1 14 2 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC:
gorule-0000006

23 0 2 0 25 0 448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI should not be used with GO:0003824 catalytic activity or descendents:
gorule-0000007

0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

No annotations should be made to uninformative high level terms:
gorule-0000008

39 330 755 308 5037 410 5017 236 426 79 747 1451 1733 1847 10000 241 1761 264 1045 940 1502 2236 81 2507

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND:
gorule-0000011

0 0 3 3 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Dual species taxon check:
gorule-0000015

0 0 1 0 38 1 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

With/From: IC annotations require a With/From GO ID:
gorule-0000016

38 0 0 0 189 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IDA annotations must not have a With/From entry:
gorule-0000017

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI annotations require a With/From entry:
gorule-0000018

457 1 12 0 1774 2 130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Automatic repair of annotations to merged or obsoleted terms:
gorule-0000020

163 130 291 225 1005 208 605 123 118 41 205 198 237 221 10000 88 242 116 244 139 203 235 242 716

Check for, and filter, annotations made to retracted publications:
gorule-0000022

0 0 0 0 116 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Each identifier in GAF is valid:
gorule-0000027

10000 10000 10000 10000 10000 10000 10000 8193 10000 844 10000 10000 10000 10000 10000 7918 10000 8953 10000 10000 10000 10000 3794 10000

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect:
gorule-0000028

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IEAs should be less than one year old.:
gorule-0000029

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0

Obsolete GO_REFs are not allowed:
gorule-0000030

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference:
gorule-0000037

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants:
gorule-0000039

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Qualifier: IKR evidence code requires a NOT qualifier:
gorule-0000042

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.:
gorule-0000046

402 300 546 575 867 662 1705 1 1 0 2 9 17 24 378 1 20 1 1 4 14 12 0 69

Annotations to ISS, ISA and ISO should not be self-referential:
gorule-0000050

0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

References should have only one ID per ID space:
gorule-0000055

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2:
gorule-0000059

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3726 0

Allowed gene product to term relations (gp2term):
gorule-0000061

607 43 120 25 3708 41 4620 3 0 0 3 3 5 4 192 1 4 3 2 0 3 5 6 210

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column):
gorule-0000063

27 1 0 0 12 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972 195

TreeGrafter IEAs should be filtered for GO reference species:
gorule-0000064

0 0 0 10000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0